Druf004216.1
Basic Information
- Insect
- Drosophila rufa
- Gene Symbol
- stc
- Assembly
- GCA_018153105.1
- Location
- JAECXS010000149.1:3878161-3881756[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 1.5e+04 -4.1 1.6 15 19 403 407 402 407 0.81 2 14 0.048 3.7e+02 1.1 2.2 4 11 436 443 435 444 0.91 3 14 5.9e-07 0.0045 16.7 15.1 1 19 448 465 448 465 0.93 4 14 2.7e-05 0.21 11.4 9.0 1 18 501 518 501 519 0.95 5 14 2 1.5e+04 -6.3 3.9 7 13 523 529 523 530 0.74 6 14 3.5e-09 2.7e-05 23.9 13.6 1 19 559 577 559 577 0.98 7 14 0.00011 0.82 9.5 16.7 4 19 625 640 618 640 0.88 8 14 0.06 4.6e+02 0.8 11.6 1 11 680 690 680 702 0.79 9 14 4.8e-10 3.7e-06 26.6 15.5 1 18 707 724 707 725 0.97 10 14 1.7 1.3e+04 -3.9 0.9 6 10 754 758 754 759 0.81 11 14 2 1.5e+04 -9.1 11.6 10 18 772 781 761 782 0.71 12 14 2 1.5e+04 -4.4 1.5 9 13 788 792 787 793 0.79 13 14 1.2e-08 9.2e-05 22.2 10.7 1 17 818 834 818 840 0.94 14 14 1.5e-06 0.011 15.5 12.5 1 19 850 869 850 869 0.96
Sequence Information
- Coding Sequence
- ATGGACGACTATTGGCAGCAGCTGACCAACGGTGTTGCTCGTGGAGGACCGGCCACTAATGAGTCAGCGGTGATCTACAATGGTCACGGTCACGAGGCAGCAGAGCAAGCGTCTGGCAGCAGCGCCAGCGGCGCTACCAGCAACAGCAACAACAACTATGTGAACTTTAATCAGTTCATCCAGCAGCACAACCTGGGCGGAGGATCATCGCCCACTGCCAGCACCGCAACAATGCAGCATCCGCTAAGCAGCGGCAATAACACAAACTACAACATCGGCGGCGGCGGAGGAGCCTTTGGCCTAAATCCGCCAGTGGCTCCGTCAGTGAATTCCAACAGCTTTGGGCATCTTTATTCGCAGCCCATATTCCCAGCGTACCAAAATGGAGAAAGCGCCGCCTCTTTCACCAACAGCTATGATGATACCTTTTCGAATCTGTACACACCGTTTGGCAACAATCCGTTTGACTTCAGCTCTTCCAAGCTACAGGCCTCGGCACCCGAATTCGTTCCCAATGTGGCCAAGCTGAGTCTGAACGAAATTCCGGCGGCGACGACGCCAAACGGGAACAGGAACATCACTGCCAGCCAAGAAACTGCCATTAATGTGACGGGAACAAGGACGCCACAGCCGGGGGGAATCGGTGGTTTAGGAGGACTCTCCGAACGAGGAGACCCTCACCACCTTCGCTTAACCGTTAACAGTTACGAAAGAGATCGGGGCGACAGGGACTCCCGACCGGGAAGCACCCGCCAACAGCGTCGCTCCGACTACCGCGATGACCGCGAGGATCGATACGATCGCAAGAAGCCCCAGAAGCAGCAGCGCTACGACAATCATCGAAGCAATAAGCGAAGGGATGACTGGAATCGCAACAGGGATCGCATCAATGGCTTTCCAAGGGCAGCCGATGAACTGGACACTAGCAACGAAAGTGCCCAGCCGTCGCCCGAAAAACATCAGACGACACAGCAGCAAATATCCCCCCGGAGAGCTCTACCGCCTCCACCGGCAGATAATGAAAAACTGTCGCAGCGGGAGAAGCTGATACGCGATATCGAGCAGCGGCGGCTGGAGTGTCTGGTGTGCGTGGAGGCGATTAAGGCGCACCAGCCGACGTGGTCTTGCCAAAACTGCTACCACGTTCTCCACCTAAAGTGTACTATTACGTGGGCGAGCAGCTCGAAATCGGATGTCGGATGGCGGTGCCCAGCCTGTCAGAATGTCCTCCAAGAGCTGCCGCGAGAGTATCTCTGCTTTTGCGGAAAACTCAAGAACCCTCCGGTGTCCCGCACAGAACTGGCACACAGCTGCGGCGAGGTCTGTTGCCGGATTGAAGGCTGCAGCCACGCTTGCACACTGCTTTGCCACCCGGGCCCCTGTCCTCCGTGCCAGGCCAACGTGGTGCGCAGCTGTGGATGCGGGCGCAGCTCAAAGACCATGCAGTGCGCCATGAAAGAAGATCTTCTGTGCGGTGAGATCTGTGACAAGGTGCTCAACTGTGCCGAGCATCGGTGCCGCGCCGAGTGTCACGCGGGCAAGTGCACAGCCTGCGCGGAGCAGGTGGAGCAGCACTGCCACTGCGGCAAACAAGAGCGCCATGTGCAGTGCACCCGCGAAAACCAAGACAAGCGAAGCTACTCGTGCAAGGAGAGTTGCGGGAAGCCTCTGCCATGCGGCAACCACAAGTGCAAGGACTCGTGTCACGCAGGCAGCTGCAGGCCTTGTAAGCTGAGTCCAGAACAGATAACTAGCTGTCCGTGCGGCAAGATGCCCGTGCCGGTGGCCCAACGTTCGAGCTGCCTAGATCCCATACCAACATGTGAGGGAATCTGCTCGCGGACGCTGCGCTGCGGAAAGCCCGCTCATCCGCACCAATGCGCCAGCAACTGTCACCTGGGCCAGTGCCCTCCGTGTCCCAAGCAGACGGCTGTGAAGTGTCGCTGCGGCCACATGGATCAGATGATTAAGTGCAGGCAGTTGTCCACGCGAGCGGACGACGCCCGCTGCAAGCGGCGCTGCACGAAGAAGCGCAGCTGTGGCAAGCACAAATGCAACGCCGAGTGCTGCATCGACATAGATCACGCCTGCCCGCTGCCCTGCAACCGGACTCTGAGCTGCGGCAAGCACAAGTGTGATCAGCCCTGCCATCGCGGCAACTGCCCGCCGTGTTATCGCAGCAGCTTCGAGGAGCTCTATTGCGAGTGCGGGGCCGAAGTGATATATCCGCCAGTGCCGTGCGGCACCAAGAAGCCGCTCTGCAAGCGGCCCTGCTCCCGCTCGCATCCCTGCGAGCATCCTCCGCAGCACAACTGCCATTCGGCGGCAACCTGTCCGCCATGCATGATGTTCACCACCAAGTTCTGCCACGGCGGTCACGAGCAGCGAAAGACCATTCCCTGCTCACAGGCCAACTTTAGCTGTGGGCTGGCGTGCGGAAAGCCGTTGCCATGCGGTCGCCATAAGTGCATCAAGCCGTGTCACGAGGGCGCCTGTCAAAGTGCCGGCGAGATATGTCGTCAGAGCTGCACCAAGCCGCGAACAATCTGTGGTCACAAATGTGCGGCCGCCTGTCACGAGGGAATCTGTCCCGAGACGCCGTGCAAGGAGCTGGTTGAGGTTCAGTGCGAGTGTGGTCACCGGAAGCAGAGCCGCAGCTGCCAGGAGCTGGCCAGGGAGCACAGTCGCATTGCCACTGCCCAGCTGGCCTCGTCAATGGCGGAGATGTCGCGTGGAAACTACATGGAGCTCAGCGAAATCCTGGCGCCGGCTAAGACCAGCAAATCAAACCGCACTCTGGACTGCAACGATGAGTGTCGGCTACTGGAGCGTAATCGTCGCCTGGCTTTTGCCTTGTCATCGGGAAGCGCAGACACGAAGCCAAAATCGCTGACCAAGTACTCGGAGTTTGTTCGCGGTTTTGCGAAGAGGAATCCGGCTCTGACCAAGAGCGTGTACGAAACATTAAGCGATCTGGTGAAGCTGGCAAAGGAGAGCAAGCAGCGGTCGCGGAGTCACTCCTTCCCCACAATGAACCGAGAGAAGAGGCAGTTGGTGCATGAGCTGTGCGAAATATTTGGCATTGAATCCGTTTCCTACGACAAGGAGCCCAATAGGAATGTTGTGGCCACCGCCCATAAGGAAAGGTGCTGGCTGCCTGCCACGAGCATCATGGAGGTGCTGGCTCGTGAGTCCGGACAACGTAGAGTCCCTGTACCCAGCAACAATGCATGGAGCTTAAAAAAATAG
- Protein Sequence
- MDDYWQQLTNGVARGGPATNESAVIYNGHGHEAAEQASGSSASGATSNSNNNYVNFNQFIQQHNLGGGSSPTASTATMQHPLSSGNNTNYNIGGGGGAFGLNPPVAPSVNSNSFGHLYSQPIFPAYQNGESAASFTNSYDDTFSNLYTPFGNNPFDFSSSKLQASAPEFVPNVAKLSLNEIPAATTPNGNRNITASQETAINVTGTRTPQPGGIGGLGGLSERGDPHHLRLTVNSYERDRGDRDSRPGSTRQQRRSDYRDDREDRYDRKKPQKQQRYDNHRSNKRRDDWNRNRDRINGFPRAADELDTSNESAQPSPEKHQTTQQQISPRRALPPPPADNEKLSQREKLIRDIEQRRLECLVCVEAIKAHQPTWSCQNCYHVLHLKCTITWASSSKSDVGWRCPACQNVLQELPREYLCFCGKLKNPPVSRTELAHSCGEVCCRIEGCSHACTLLCHPGPCPPCQANVVRSCGCGRSSKTMQCAMKEDLLCGEICDKVLNCAEHRCRAECHAGKCTACAEQVEQHCHCGKQERHVQCTRENQDKRSYSCKESCGKPLPCGNHKCKDSCHAGSCRPCKLSPEQITSCPCGKMPVPVAQRSSCLDPIPTCEGICSRTLRCGKPAHPHQCASNCHLGQCPPCPKQTAVKCRCGHMDQMIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPLCKRPCSRSHPCEHPPQHNCHSAATCPPCMMFTTKFCHGGHEQRKTIPCSQANFSCGLACGKPLPCGRHKCIKPCHEGACQSAGEICRQSCTKPRTICGHKCAAACHEGICPETPCKELVEVQCECGHRKQSRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPAKTSKSNRTLDCNDECRLLERNRRLAFALSSGSADTKPKSLTKYSEFVRGFAKRNPALTKSVYETLSDLVKLAKESKQRSRSHSFPTMNREKRQLVHELCEIFGIESVSYDKEPNRNVVATAHKERCWLPATSIMEVLARESGQRRVPVPSNNAWSLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00489062;
- 90% Identity
- iTF_00489062;
- 80% Identity
- -