Basic Information

Insect: Drosophila subobscura
Gene Symbol: stc
Assembly: GCA_008121235.1
Location: NC:2126771-2131192[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 1.3e+04 -4.2 1.6 15 19 440 444 439 444 0.81

2 13 0.05 3.3e+02 1.0 2.2 4 11 473 480 472 481 0.91

3 13 6.2e-07 0.004 16.7 15.1 1 19 485 502 485 502 0.93

4 13 4.4e-06 0.028 14.0 16.3 1 19 538 556 538 556 0.99

5 13 2 1.3e+04 -6.3 3.9 7 13 560 566 560 567 0.74

6 13 5.5e-09 3.6e-05 23.2 12.7 1 19 596 614 596 614 0.98

7 13 0.00015 0.97 9.1 18.0 4 19 662 677 655 677 0.88

8 13 0.075 4.9e+02 0.5 11.9 1 11 717 727 717 739 0.79

9 13 5e-10 3.3e-06 26.6 15.5 1 18 744 761 744 762 0.97

10 13 1.8 1.2e+04 -3.9 0.9 6 10 791 795 791 796 0.81

11 13 2 1.3e+04 -8.5 11.7 4 18 803 818 798 819 0.75

12 13 3.2e-09 2.1e-05 24.0 11.2 1 17 855 871 855 878 0.94

13 13 7.7e-07 0.0051 16.4 11.9 1 19 888 907 888 907 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	1.3e+04	-4.2	1.6	15	19	440	444	439	444	0.81
2	13	0.05	3.3e+02	1.0	2.2	4	11	473	480	472	481	0.91
3	13	6.2e-07	0.004	16.7	15.1	1	19	485	502	485	502	0.93
4	13	4.4e-06	0.028	14.0	16.3	1	19	538	556	538	556	0.99
5	13	2	1.3e+04	-6.3	3.9	7	13	560	566	560	567	0.74
6	13	5.5e-09	3.6e-05	23.2	12.7	1	19	596	614	596	614	0.98
7	13	0.00015	0.97	9.1	18.0	4	19	662	677	655	677	0.88
8	13	0.075	4.9e+02	0.5	11.9	1	11	717	727	717	739	0.79
9	13	5e-10	3.3e-06	26.6	15.5	1	18	744	761	744	762	0.97
10	13	1.8	1.2e+04	-3.9	0.9	6	10	791	795	791	796	0.81
11	13	2	1.3e+04	-8.5	11.7	4	18	803	818	798	819	0.75
12	13	3.2e-09	2.1e-05	24.0	11.2	1	17	855	871	855	878	0.94
13	13	7.7e-07	0.0051	16.4	11.9	1	19	888	907	888	907	0.96

Sequence Information

Coding Sequence: ATGTCGGAGTACTGGAACCAGACCAATGGCACAGGCGGAGGACCGGCCACCAGTGAATCCTCAATGCATTCGTCGACGCGTGCCAGCAATGCCGATGGAACCtcagcagctgtggctggggtGGCGGCGGATCCCAACAGAAACACCAACGAgggcggcggcaacaacaactatgTGAGTTTCAATCAGTTCATCATGCAGCACAATCTGGCAGCCAGCACAGGCGCACTGCCTTACCATCTCCTGGCTAGCAACGCGAATTACACCGTCGGTGGGGGCGGAGGCGCCTTCGGACTAACGCCGTCCTCCTCGGGGAGCACCGCCGCCGGTGGCGACGTTTCAAATAGCTTTGGAAATTTCTACTCGCAGCCGGCGGCATTCCCTCCGTCATATCAAAATGGCGATGGTGTCGCCGCCAGCTCGGCGTCATTCGACAACAGCCACGTGCAGAGGAGCCCGTTCTCCAATCTGTACACGCCTTTTGGCAATAATCCGTTTGATTTTAGCGCTTCTAAGCTGCAGGCATCCGCCCCAGAGTTTGTGCCCAACATAATGAAGCTCAGCCTCGAGGAGTCCTCTGGCCTGACGAACGGCAATAGCACTGCCAACCATGAAACTGCCGTGAACGAGGGCGCAACACATCGTCCAGATCTACAGGGAACCGCCGACCATCGCGGCAGCTCCACAGGCGGCGGACCACAGCCAAGATCTAATCACAATTATGCCTTGCCCACCGAACGGGATCGTGACAGAGAGCGGGATCGCGACAGAGTGCGGAACCGTGACAGAGAGCGGGACCGTGagcgggatcgggatcgggataGAGACTTTCGGGGTGGCGGCACACATCAGCAGCGTCGCGGTGACTATCGCCATGATCGCGAAGAGCGTCGCGAGGATCGATACGACCGCAACGAACGCAAGaagccacagaagcagcagcgttATGACAATAATCGCAGCAACAAGAGACGCGACGACTGGAACAGGAATCGGGATCGCATCAACGGATTTCCGAGAGCCGTCGATGACCTGGACACGAGCAATGAAAGCGCCCATCCCTCGcccgagaagcagcagctgcagcatcaacAGATCTCGCCACGCCGTGCCCCGCCGCCTCCAGATAGCGAGAAGCTCTCGCAGCGGGAGAAACTGATCCGCGACATCGAACAGAGGCGATTGGAGTGCCTCGTCTGTGTGGAGACTATCAAGGCGCACCATTCGACGTGGTCCTGCCAGAACTGCTACCACGTGATCCATCTCAAGTGCACCATCACCTGGGCGAGTAGCTCCAAGTCGGATGTAGGCTGGCGCTGTCCGGCATGCCAGAATGTGCTGCAAGATTTGCCCCGGGAGTATCTGTGCTTTTGCGGCAAGCTCAAGAATCCGACAGTGTCCCGCAACGAGCTGGCCCACAGCTGCGGAGAGGTCTGCTGCCGTGTCGAGGGATGTAGCCATGCGTGCACACTGCTGTGCCATCCCGGACCCTGTCCGCCGTGCCAGGCGAATGTCGTGaggagctgcggctgcggcagaaGCTCCCAGACGATGCAGTGCGCCATGAAGGAGGAGCTCAAGTGCGGGGAGATCTGCGACAAGATATTAAACTGCGGCGAGCATCATTGCAAGGAGGAGTGCCACTCGGGAAAGTGTGCCGCCTGCCCGGAGCAAGTGGAgcagcactgccactgcggcaAGCAGGATCGTCAGGTTCAGTGCACGCGCGAGAGCCTAGACAAGCGCCACTACTCGTGCAAGGAGAGCTGCGGCCAGCCGCTGCCTTGTGGCAATCACAAGTGCAAGGATTCCTGTCACGCCGGAAACTGCAGAACCTGCAAACTGAGTCCCGAGCAGATAACTAGCTGTCCGTGCGGCAAGATGCCTGTGCCGGCAGCCCAGCGCTCGAGCTGCATGGATGCTATACCAACGTGTGAGGGTATCTGCTCGCGGACGCTGCGCTGCGGCAAGCCAGCACATCCGCATCAGTGTGGCAGCAAATGCCACCTGGGGCAGTGTCCTCCGTGTCCCAAGCAGACGGCTGTAAAGTGCCGATGCGGCCACATGGACCAGATGATCAAGTGCCGCCAGCTGTCCAGCCGAGCCGACGACGCGCGCTGCAAGAAGCGCTGCATCAAGAAGCGGAGCTGTGGCAAGCACAAGTGCAATGCCGAGTGCTGCATCGACATTGATCACGCCTGTCCGCTGCCGTGCAACCGCACGTTGAGCTGTGGCAAACACAAGTGTGACCAGCCCTGTCATCGCGGCAATTGTCCGCCTTGCTACCGTAGCAGCTTCGAGGAGCTCTACTGCGAGTGCGGAGCCGAGGTTATCTATCCGCCAGTGCCGTGTGGTACCAAGAAACCGCTTTGCAAGCGTCCGTGCTCGCGCCAGCATCCATGCGACCATACACCGCAGCACAATTGCCATTCGGCGGCCACCTGCCCGCCCTGTATGatgtttaccacaaagtggtGCCACGGAAACCACGAGCAACGCAAAACCATTCCCTGCTCCCAGGAGAGCTTCAGCTGCGGGCTGTCCTGCGGCAAGGCGCTACCCTGTGGCCGTCACAAGTGCATCAAACCCTGCCACGAGGGCCCCTGTCAATCATCTCCAAGCGAGATTTGCCGCCAGAGCTGCACCAAGCCGCGCACGCTCTGCGGCCACAAGTGTGCGTTTGCCTGCCACGAAGGCGCCTGCCCGGAGACACCATGCAAGGAGCTGGTGGAGGTGCAGTGCGAGTGCGGCAACCGGAAGCTGAGTCGCAGCTGCCAGGAACTGGCTCGCGAGCACAGCCGCATTGCCACCGCCCAACTGGCCTCCTCTATGGCCGAGATGTCCCGCGGCAACTACATGGAACTCAGCGAGATACTGGCACCGGCTAAAGTCAACAAGTCGAACAGAACTCTGGACTGCAACGAAGAGTGTCGTGTGTTGGAGCGGAATCGCCGTTTGGCGCAGGCACTGCAGTCGCGCAATCCGGATACGCAGCAGAAATCTCTGACCAAGTACTCGGAGTTCTTGCGGGGATTTTCCAAGCGAAATCAGGCACTGACCAAGAGCGTGTACGAGACGTTGACAGATCTGGTGAAGCTGGCCAAGGAGAGCAAGCAGCGGTCGCGCAGTCACTCCTTTCCAACGATGAACAGGGAGAAGAGGCAGATGGTGCACGAGCTGTGCGAGATATTCGGCATTGAGTCGGTGTCGTATGACAAGGAACCCAATCGGAATGTGGTGGCCACGGCACACAAGGATAGGtgctggctgcctgccacaagcATTATGGAGGTGTTGGCCCGTGAGTCCGGACAACGACGCGTTCCAGTGCCCAGCAATAATGCTTGGGGTCTGAAAAAGTAG
Protein Sequence: MSEYWNQTNGTGGGPATSESSMHSSTRASNADGTSAAVAGVAADPNRNTNEGGGNNNYVSFNQFIMQHNLAASTGALPYHLLASNANYTVGGGGGAFGLTPSSSGSTAAGGDVSNSFGNFYSQPAAFPPSYQNGDGVAASSASFDNSHVQRSPFSNLYTPFGNNPFDFSASKLQASAPEFVPNIMKLSLEESSGLTNGNSTANHETAVNEGATHRPDLQGTADHRGSSTGGGPQPRSNHNYALPTERDRDRERDRDRVRNRDRERDRERDRDRDRDFRGGGTHQQRRGDYRHDREERREDRYDRNERKKPQKQQRYDNNRSNKRRDDWNRNRDRINGFPRAVDDLDTSNESAHPSPEKQQLQHQQISPRRAPPPPDSEKLSQREKLIRDIEQRRLECLVCVETIKAHHSTWSCQNCYHVIHLKCTITWASSSKSDVGWRCPACQNVLQDLPREYLCFCGKLKNPTVSRNELAHSCGEVCCRVEGCSHACTLLCHPGPCPPCQANVVRSCGCGRSSQTMQCAMKEELKCGEICDKILNCGEHHCKEECHSGKCAACPEQVEQHCHCGKQDRQVQCTRESLDKRHYSCKESCGQPLPCGNHKCKDSCHAGNCRTCKLSPEQITSCPCGKMPVPAAQRSSCMDAIPTCEGICSRTLRCGKPAHPHQCGSKCHLGQCPPCPKQTAVKCRCGHMDQMIKCRQLSSRADDARCKKRCIKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPLCKRPCSRQHPCDHTPQHNCHSAATCPPCMMFTTKWCHGNHEQRKTIPCSQESFSCGLSCGKALPCGRHKCIKPCHEGPCQSSPSEICRQSCTKPRTLCGHKCAFACHEGACPETPCKELVEVQCECGNRKLSRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPAKVNKSNRTLDCNEECRVLERNRRLAQALQSRNPDTQQKSLTKYSEFLRGFSKRNQALTKSVYETLTDLVKLAKESKQRSRSHSFPTMNREKRQMVHELCEIFGIESVSYDKEPNRNVVATAHKDRCWLPATSIMEVLARESGQRRVPVPSNNAWGLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00489062;
90% Identity: iTF_00564333;
80% Identity: -