Basic Information

Insect: Drosophila pseudoobscura
Gene Symbol: stc
Assembly: GCA_009870125.2
Location: CM020870.1:12241396-12244913[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 2e+04 -4.1 1.6 15 19 405 409 404 409 0.81

2 13 0.048 4.8e+02 1.1 2.2 4 11 438 445 437 446 0.91

3 13 6e-07 0.006 16.7 15.1 1 19 450 467 450 467 0.93

4 13 4.2e-06 0.042 14.0 16.3 1 19 503 521 503 521 0.99

5 13 2 2e+04 -6.3 3.9 7 13 525 531 525 532 0.74

6 13 1.9e-09 1.9e-05 24.7 13.7 1 19 561 579 561 579 0.98

7 13 0.0002 2 8.7 17.4 4 19 627 642 620 642 0.87

8 13 0.06 6e+02 0.8 11.6 1 11 682 692 682 704 0.79

9 13 4.8e-10 4.9e-06 26.6 15.5 1 18 709 726 709 727 0.97

10 13 1.7 1.7e+04 -3.9 0.9 6 10 756 760 756 761 0.81

11 13 2 2e+04 -7.6 10.0 10 18 774 783 763 784 0.75

12 13 2.3e-09 2.3e-05 24.4 10.8 1 17 820 836 820 843 0.94

13 13 5.6e-07 0.0057 16.8 13.6 1 19 853 872 853 872 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	2e+04	-4.1	1.6	15	19	405	409	404	409	0.81
2	13	0.048	4.8e+02	1.1	2.2	4	11	438	445	437	446	0.91
3	13	6e-07	0.006	16.7	15.1	1	19	450	467	450	467	0.93
4	13	4.2e-06	0.042	14.0	16.3	1	19	503	521	503	521	0.99
5	13	2	2e+04	-6.3	3.9	7	13	525	531	525	532	0.74
6	13	1.9e-09	1.9e-05	24.7	13.7	1	19	561	579	561	579	0.98
7	13	0.0002	2	8.7	17.4	4	19	627	642	620	642	0.87
8	13	0.06	6e+02	0.8	11.6	1	11	682	692	682	704	0.79
9	13	4.8e-10	4.9e-06	26.6	15.5	1	18	709	726	709	727	0.97
10	13	1.7	1.7e+04	-3.9	0.9	6	10	756	760	756	761	0.81
11	13	2	2e+04	-7.6	10.0	10	18	774	783	763	784	0.75
12	13	2.3e-09	2.3e-05	24.4	10.8	1	17	820	836	820	843	0.94
13	13	5.6e-07	0.0057	16.8	13.6	1	19	853	872	853	872	0.96

Sequence Information

Coding Sequence: ATGGATgccaacagcaacggcaacgacggcggcagcaacaacaactatgtGAGTTTCAATCAGTTCATCATGCAGCACAATCTGGCAGCCAACGCAGGCAGCGCATTACCTTACCATCTCCTGGCTAACAACGCGAATTACACCGTCGGTGGGGGCGGTGGCGCCTTTGGATTAACGCCGTCCTCTTCGGGGAGCACCGCCGCCGGTGGCGACGTTTCAAATAGCTTTGGAAATTTCTATCAGCAGCCGTCGGCCGCATTCCCGTCATATCAAAATGGCGATGGTGTCGCCGCTAGCTCGGCGGCATTCAGTAACAGCTACGCGGTTGGAAACATGAACATGGGCGCCTTCTCCAATGTGTACACGCCTTTTGGCAACAATCCGTTTGATTTTAGCGCCTCTAAGCTGCAGGCATCAGCACCAGAATTTGTGCCTAACATGATGAAGCTGACTCTGGAGGAGTCGTCTGGCCTAACGAACGGCAACAGCACTGCCAGCTTTGAAACTGCCATGAGCGAGGGAGTCCAGGCAGCAATACAGCGTCCAGATCTACATGGAGCCGCCGACAATCGAGGAAACGCCTCAGGGGGCGGTCCAAAGCCAAGATCTAATCACAACTATGCCTTGCCCACCGAACGAGATCGTGACAGAGAACGGGATcgcgacagagagagggaacgCGATCGCGATCGAGATCGAGATCGAGAGAGAGACTTTCGGTCTGGCGGCACTCGTCAGCAGCGTCGCGGTGACTATCGCGATGATCGCGAAGAGCGTCGCGAGGATCGATACGACCGCAATGATCGTAACGAACGCAAGAAGCCACAGAAGCAACAGCGCTATGACAATCATCGCAGCAATAAGCGGCGCGACGACTGGAATCGCAATCGGGATCGCATCAACGGGTTTCCGAGAGCCGCCGATGACCTAGACACGAGCAATGAAAGCGCTCATCCCTCGCccgagaagcagcagctacagcagcaacagatcTCGCCACGCCGTGCCccaccgccgccagaaaacgaGAAGCTCTCGCAGAGAGAGAAACTGATCCGAGACATCGAACAGAGGCGATTGGAGTGCCTCGTCTGTGTGGAGACCATCAAGTCACACCATTCGACGTGGTCGTGCCAGAACTGCTACCACGTGATCCATCTGAAGTGCACCATCACCTGGGCGAGTAGCTCCAAGTCGGATGTGGGCTGGCGCTGTCCCGCCTGCCAGAATGTGTTGCAGGATCTGCCACGGGAGTATCTGTGCTTTTGCGGCAAGCTCAAGAATCCGACAGTGTCCCGCAACGAGTTGGCCCACAGCTGCGGGGAGGTTTGCTGCCGCATCGAAGGATGCAGCCATGCGTGCACGCTGCTCTGCCATCCCGGACCCTGTCCGCCGTGCCAGGCGAATGTCGTGAGAAGCTGCGGATGCGGCAGAAGCTCCCAGACGATGCAGTGCGCCATGAAGGAGGAGCTCAAGTGCGGCGAGATTTGCGACAAGGTATTGAACTGCGGTGAGCATCACTGCAAGGAGGAGTGTCACTCGGGCAAGTGCGCCGCCTGCCCGGAGCAAGTGGAgcagcactgccactgcggcaAGCAGGATCGGCAGGTGCCATGCACGCGCGAGAGCCTCGACAAGCGCAACTATTCGTGCAAGGAGAGCTGCGGACAGCCCCTGCCCTGCGGCAATCACAAGTGCAAGGATTCTTGTCACGCCGGAAACTGCAGACCCTGTAAACTGAGCCCCGAGCAGATAACCAGCTGCCCCTGCGGCAAGATGCCCGTGCCGGCAGCTCAGCGCTCGAGCTGCCTGGATGCCATACCCACCTGCGAGGGTATCTGCTCGCGTACGCTGCGCTGTGGCAAGCCAGCCCATCCGCATCAGTGTGGCAGCAAGTGCCATCTGGGGCAGTGCCCGCCGTGTCAGAAGCAGACGGCTGTGAAGTGCCGATGCGGCCACATGGACCAGATGATCAAGTGTCGCCAGCTGTCCACCCGGGCCGACGATGCCCGCTGCAAGAAGCGCTGCATCAAGAAGCGGAGCTGTGGCAAGCACAAGTGCAATGCCGAGTGCTGCATAGACATCGATCACGCCTGTCCGCTGCCGTGCAATCGTACCCTGAGCTGTGGCAAGCACAAGTGTGACCAGCCCTGTCATCGCGGGAATTGTCCTCCCTGCTACCGCAGCAGCTTCGAGGAGCTCTTCTGCGAGTGTGGAGCCGAGGTCATCTATCCGCCGGTGCCCTGCGGCACGAAGAAACCGCTGTGCAAGCGTCCGTGCTCGCGCCAGCATCCGTGCGATCATTCACCGCAGCACAATTGCCATTCGGCGGCCACCTGCCCGCCCTGCATGATGTTCACGACGAAGTGGTGCCACGGCAATCACGAACAACGCAAAACCATTCCCTGCTCCCAGGAGAGCTTCAGCTGTGGCCTGTCCTGTGGCAAGCCCCTCCCATGTGGCCGTCACAAATGCATCAAGCCCTGTCACGAGGGGCCCTGTCAATCATCACCAAGCGACATCTGCCGCCAGAGCTGCACCAAACCGCGCACGCTCTGCGGCCACAAGTGTGCGTCTGCCTGCCACGAGGGAGCATGCCCCGAGACACCATGCAAGGAGCTGGTGGATGTGCAGTGCGAGTGCGGCAACCGGAAGCTAAGTCGCAGCTGCCAGGAGCTGGCTCGCGAGCACAGTCGCATCGCCACCGCCCAGCTGGCCTCCTCAATGGCCGAGATGTCGCGCGGCAACTACATGGAACTCAGTGAGATCCTGGCACCGGCCAAGGTCAACAAGTCGAACAGAACACTGGACTGCAACGACGAGTGTCGTGTGTTGGAACGGAATCGCCGTTTGGCACAGGCCCTACAATCGCGCAATCCGGATACGCAGCAGAAATCTCTAACCAAATATTCAGAGTTTTTGCGTGGTTTTGCCAAACGGAATCAGGCGCTGACCAAGAGCGTGTACGAGACGTTGACAGATCTGGTGAAGCTTGCCAAGGAGAGCAAGCAGCGGTCGCGCAGTCACTCTTTCCCAACGATGAACCGGGAGAAGAGGCAGATGGTGCACGAATTGTGCGAGATCTTCGGCATTGAGTCGGTGTCGTATGACAAGGAACCGAATCGCAATGTGGTGGCCACGGCACACAAGGAAAGGtgctggctgcctgccactaGCATTATGGAGGTGTTGGCCCGTGAGTCTGGACAGCGTCGCGTCCCCGTGCCCAGCAACAATGCTTGGGGCCTGAAAAAGTAG
Protein Sequence: MDANSNGNDGGSNNNYVSFNQFIMQHNLAANAGSALPYHLLANNANYTVGGGGGAFGLTPSSSGSTAAGGDVSNSFGNFYQQPSAAFPSYQNGDGVAASSAAFSNSYAVGNMNMGAFSNVYTPFGNNPFDFSASKLQASAPEFVPNMMKLTLEESSGLTNGNSTASFETAMSEGVQAAIQRPDLHGAADNRGNASGGGPKPRSNHNYALPTERDRDRERDRDRERERDRDRDRDRERDFRSGGTRQQRRGDYRDDREERREDRYDRNDRNERKKPQKQQRYDNHRSNKRRDDWNRNRDRINGFPRAADDLDTSNESAHPSPEKQQLQQQQISPRRAPPPPENEKLSQREKLIRDIEQRRLECLVCVETIKSHHSTWSCQNCYHVIHLKCTITWASSSKSDVGWRCPACQNVLQDLPREYLCFCGKLKNPTVSRNELAHSCGEVCCRIEGCSHACTLLCHPGPCPPCQANVVRSCGCGRSSQTMQCAMKEELKCGEICDKVLNCGEHHCKEECHSGKCAACPEQVEQHCHCGKQDRQVPCTRESLDKRNYSCKESCGQPLPCGNHKCKDSCHAGNCRPCKLSPEQITSCPCGKMPVPAAQRSSCLDAIPTCEGICSRTLRCGKPAHPHQCGSKCHLGQCPPCQKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCIKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELFCECGAEVIYPPVPCGTKKPLCKRPCSRQHPCDHSPQHNCHSAATCPPCMMFTTKWCHGNHEQRKTIPCSQESFSCGLSCGKPLPCGRHKCIKPCHEGPCQSSPSDICRQSCTKPRTLCGHKCASACHEGACPETPCKELVDVQCECGNRKLSRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPAKVNKSNRTLDCNDECRVLERNRRLAQALQSRNPDTQQKSLTKYSEFLRGFAKRNQALTKSVYETLTDLVKLAKESKQRSRSHSFPTMNREKRQMVHELCEIFGIESVSYDKEPNRNVVATAHKERCWLPATSIMEVLARESGQRRVPVPSNNAWGLKK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00489062;
90% Identity: iTF_00564333;
80% Identity: -