Cfus012897.1
Basic Information
- Insect
- Ceratosolen fusciceps
- Gene Symbol
- -
- Assembly
- GCA_018883505.1
- Location
- RCIC01000002.1:9561825-9574926[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.1e-13 1.3e-09 37.8 0.0 1 39 332 371 332 375 0.90 2 4 4.1e-12 1e-08 34.9 0.0 2 39 387 424 386 427 0.94 3 4 5.7e-19 1.4e-15 56.8 0.0 2 45 442 486 441 486 0.97 4 4 6.6e-19 1.6e-15 56.6 0.1 1 42 493 535 493 536 0.97
Sequence Information
- Coding Sequence
- ATGTACGCCGCGGAGTCGTTTGAGCAGCAGGTTCACGTTCCGAATATCGGGGAAAGGCCGGGGAGGAGCCAGCCGCAAGTCCGGCTGTCGCTGCTGAAGACGGCGGATCAGCTGAAGATCAAAGGCCTGTGCGAGGTGCCGGAGAGCAGGGACGGCCCGTCGGTTAGCCTGAGCTCGCCGCCCCGCGACTCCAGCACACCTCGGATAAACTTCGCCAAGATAAAGAGGCACCATCCGCGATACAAGAGACCGCGGTCCTCCTACGAGAGTAGCCTACGCCCCGGCCACGGACCCGGACCAAATACGGAGCCGCGACACCACCACCACCACCACCACCATAATCATCATCTCGGTGACGCGACCAAGTACAAGGAGGAGGACTTTGTCGAGAACTACAATCGCCGAGACTGTTGGCCGGCCGAAGATGAAGATTGCATGGAGACGACAGCGACGACCACAACAGTAGTCCTGGACTCGTGCCAGCGCAGCACCAGCAGCGTCGGCGGAGTTGGAGGAGACAACAACAATAGCGGCACCAACAACAACGCCGCCGGCCCAGTGACCAACAACAACGGTGACATGTTCTGTCACACAGGCCTCGGCCACTACGGCCACCATCCGGACCCGGGCGAGGTCGACTTGCCGCCCGAGACACAGCCGACGCCACCGAGTGCGACCCTAGTCGGTACGACCATCACCCACCTCCGGGATCCAGATCACCACACGGGAGACATCCAGAATTGCGACAGCGTGAAGATTAAGTTCGAGACGCTGCACACGATGGACTCGTCGGACACGATCGACATAGACAGCCACATGTCCGACCGGGCGAGCGTCAGCTCCAAGAACGCCGACGACAACATGATGATGATAACTCCGGAGCTCCTGGGCCTCATGCCCTCCGGCAGCTCCGTGCACTCGGACTCGGGCGAGAACAATTCCCGCAGCCATTCCGGACAGTCCGGCTCCCACCACCACGGCTCCAAGTCCTGGACGCAGGAGGACATGGACGCCGCGCTCGAGGCATTGAGGAATCACGACATGAGTCTGACCAAGGCCTCCGCTACCTTCGGCATACCCTCGACGACGCTCTGGCAGCGGGCGCATCGCCTCGGCATCGACACCCCGAAGAAGGACGGGCCGACCAAGTCCTGGAGCGACGAGAGCCTCAACAACGCCCTGGACGCCTTGCGCACGGGCACCATCTCCGCGAACAAGGCCTCCAAGGCCTTTGGAATACCCTCGAGCACGCTCTACAAGATAGCGAGGAGGGAGGGCATAAGGCTCGCGGCCCCGTTCAACGCGAGTCCGACCACGTGGTCGCCCGCCGACCTCGACCGGGCCCTCGAGGCCATCAGGTCCGGCCAGACCTCCGTACAGCGTGCCTCCACCGAGTTCGGCATACCCACGGGGACGCTCTACGGGCGCTGCAAGAGGGAGGGCATCGAGCTCAGCAGGAGTAACCCGACGCCCTGGAGCGAGGACGCCATGACCGAGGCCCTCGAGGCCGTCAGGTTGGGACACATGAGCATTAATCAGGCGGCGATCCATTACAATCTGCCCTACTCGTCGCTCTACGGGCGCTTCAAGCGCGGCAAGTACGAGGAACCGGTTGTCAACGAAATGTCCCAGGACGGATCGTCGCAGCATTTCCATCAGAGCCCGACTCAGAACCACTCGTCATCCCTTCCCGACCAAATGCCCTACCAGGGCAGCTGA
- Protein Sequence
- MYAAESFEQQVHVPNIGERPGRSQPQVRLSLLKTADQLKIKGLCEVPESRDGPSVSLSSPPRDSSTPRINFAKIKRHHPRYKRPRSSYESSLRPGHGPGPNTEPRHHHHHHHHNHHLGDATKYKEEDFVENYNRRDCWPAEDEDCMETTATTTTVVLDSCQRSTSSVGGVGGDNNNSGTNNNAAGPVTNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTGDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00287105; iTF_01110851; iTF_01036934; iTF_01035339; iTF_01036114; iTF_01274386; iTF_01274621; iTF_01035551; iTF_01037151; iTF_00968711; iTF_00738248; iTF_00079753; iTF_00463914; iTF_00738986; iTF_00309420; iTF_01112492; iTF_01110021; iTF_00969485; iTF_00714286; iTF_00143791; iTF_00708464; iTF_01488465; iTF_01381234; iTF_01380516; iTF_00713587; iTF_00712759; iTF_01464950; iTF_00073633; iTF_01468738; iTF_01469571; iTF_01466090; iTF_01113559; iTF_01113326; iTF_01111672; iTF_01486968; iTF_01190237; iTF_00286240;
- 90% Identity
- iTF_00463914;
- 80% Identity
- -