Abak008767.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000004.1:11589087-11593943[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.9e-13 1e-09 37.7 0.0 1 39 343 382 343 386 0.90 2 4 4.8e-12 8.2e-09 34.8 0.0 2 39 398 435 397 438 0.94 3 4 6.6e-19 1.1e-15 56.8 0.0 2 45 453 497 452 497 0.97 4 4 7.6e-19 1.3e-15 56.6 0.1 1 42 504 546 504 547 0.97
Sequence Information
- Coding Sequence
- ATGCTTTTGCATAACTTGATTTTTGGGAATACGATAGCATTAACAAAACTTCAACGATATTCCGTCTACCAGTCTCTAACCGAAGCTTCGACCATTTGCTTGCAGTCCTTGTTGAAAACGGCCGACCAGCTGAAAATCAAGGGTCTGTGCGAGGTGCCGGAGAGCAGAGAAGGCCCATCGGTGAGTTTGAGCTCGCCTCCGCGAGACTGCAGTACACCCCGAGTGAACTTCGCGAAAATAAAGAGACACCACCAGCGCTACAAAAGGCCACGAACCTCGTTCGAATCAGGCGCCAACGCTGCCCAATCCAGAGTCAATACGGAGAGACATAATCATCACCTGCATCGTCATCACGACAATTCCAGATACAAAGACGAAGATTTTGTCGAAAGCTACGTGCGCGACTGTAACAAAGAGAATCGGCGAGACTGGCCAGTTGAAGATGACGATTGCATGGAGACGACAGCGACGAGCACAACAGCAGTAGTCCTGGACTCGTGCCAGCGCGGCAGTGGCAGCGCAGGAGGAGCTGGAGGAGACAACAACAACAGCAGCGCCAGCGCTAATAACAACGCCGCCGGAACCGCAGCCACCAACAACAACAACGGTGACATGTTCTGTCACACAGGTCTCGGTCACTACGGCCATCATCCTGATCCAGGCGAGGTAGATTTACCACCAGAAACACAACCGACACCACCAAGCGCGACACTCGTTGGCACCACCATCACCCACCTCAGAGATCCAGATCATCATACGGCAGATATTCAGAGTTGCGACAGTGTGAAAATAAAGTTCGAGACGCTGCACACCATGGATTCGTCGGATACGATCGACATCGACAGCCACATGTCGGACCGAGCGAGCGTCAGCTCGAAAAACGCCGACGACAATATGATGATGATCACGCCAGAGTTGCTGGGATTGATGCCTTCGGGCAGTTCGGTGCACTCGGACTCCGGTGAAAATAATTCACGCAGTCACTCTGGGCAGTCGGGATCGCATCATCACGGCTCTAAATCGTGGACACAAGAGGACATGGACGCGGCACTGGAAGCGCTCAGGAACCACGACATGAGCCTCACCAAAGCCTCGGCGACGTTCGGCATACCTTCGACGACGCTCTGGCAACGTGCCCACCGCCTCGGCATCGACACGCCGAAAAAAGACGGCCCTACGAAATCGTGGAGCGACGAGAGTCTCAATAACGCACTGGACGCGTTGCGAACCGGCACGATCTCCGCCAACAAAGCTTCCAAGGCTTTCGGCATACCCTCGAGCACGCTTTACAAGATCGCGAGGCGAGAAGGCATCAGATTGGCAGCGCCATTCAACGCTAGCCCGACGACTTGGTCGCCAGCCGATCTCGATCGCGCTCTCGAGGCCATTCGTTCCGGACAGACGAGCGTGCAGAGAGCTTCGACGGAATTCGGTATACCTACGGGAACATTGTACGGCAGATGCAAGAGGGAGGGCATCGAACTCAGCAGGAGCAATCCTACACCTTGGAGCGAAGACGCTATGACCGAAGCACTGGAGGCCGTCAGGTTGGGTCATATGAGCATAAATCAAGCGGCGATCCATTACAATCTTCCGTACTCGTCGTTGTACGGACGCTTCAAGCGAGGAAAATACGAGGAACCGGTGGTCAACGATATGTCGCAGGACGGATCTTCCCAGCACTTCGTCCATCAGAGTCCGACTCAGAATCATTCGTCCTCGCTTCCCGACCAAATGCCGTATCAGGGCAGCTGA
- Protein Sequence
- MLLHNLIFGNTIALTKLQRYSVYQSLTEASTICLQSLLKTADQLKIKGLCEVPESREGPSVSLSSPPRDCSTPRVNFAKIKRHHQRYKRPRTSFESGANAAQSRVNTERHNHHLHRHHDNSRYKDEDFVESYVRDCNKENRRDWPVEDDDCMETTATSTTAVVLDSCQRGSGSAGGAGGDNNNSSASANNNAAGTAATNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNDMSQDGSSQHFVHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- iTF_00463914;
- 80% Identity
- -