Ttub009745.1
Basic Information
- Insect
- Torymus tubicola
- Gene Symbol
- -
- Assembly
- GCA_035583055.1
- Location
- JAWWEQ010000055.1:26220767-26225588[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.2e-12 8.9e-09 36.4 0.0 1 39 326 365 326 369 0.90 2 4 1.6e-11 2.7e-08 34.9 0.0 2 39 381 418 380 421 0.94 3 4 2.2e-18 3.7e-15 56.8 0.0 2 45 436 480 435 480 0.97 4 4 7.1e-18 1.2e-14 55.2 0.0 1 42 487 529 487 530 0.97
Sequence Information
- Coding Sequence
- ATGCGgaagTCGCTACTGAAGACGGCCGACCAGCTGAAAATCAAGGGCCTGTGCGAGGTGCCGGAGAGTAGGGAAGGCCCCTCGGTGAGCTTGAGTTCACCGCCACGGGACTCGAGCACACCACGGCTAAACTTTCACACGAAACTCAAACGACATCATCAGCGATACAAGAAAGCTCGTACGAATTTCGAGGCTAAcggtaataacaataataacaacagtaGGGCCCACAATCATCATCAACAGGATAGGTACAAGGAAGAGGATTACGTTGAGAGCTACGTCAGGGATTGCAATAAGGAGAACCGCCGCGAGTGCTGGCCGGCCGAAGATGACGAGTGCATGGAGACGACAGCGACGACCCCAGCAGTAGTCCTGGACTCGTGCCAGCGCAGCAATAGCGccgggggaggaggaggaggaggaggcggtggcggtggtggaggtggtggtggtggcggtggtgggaGCACggacaacaacaacagcggcagtgctgctgctgccaacAACAACGCCGCCGGCGGCGCCAACTCCACGACGACGAACAACAACGGCGACATGTTCTGTCACACAGGTCTCGGGCATTATGGGCATCATCCGGACCCGGCGGAGGTCGATCTACCGCCGGAGACACAGCCAACGCCGCCTAGCGCAACCCTCGTAGGCACGACCATCACTCACCTCAGGGACCCGGATCACCATACGGCAGATATCCAGAGTTGCGACAGTGTAAAGGTAAAATTTGAGACGCTACACACGATGGACTCGTCGGACACGATCGACATTGACAGCCACATGTCCGACCGGGCGAGTGTTAGCTCGAAGAACGCAGACGACAATATGATGATGATAACGCCGGAGTTGCTCGGCCTCATGCCCTCCGGTAGCAGTGTACACTCGGATTCAGGGGAGAACAATTCACGTAGTCACTCGGGACAGTCGGGATCGCATCATCACGGCTCGAAGTCTTGGACGCAGGAAGATATGGACGCGGCTCTCGACGCACTTAGGAATCACGATATGAGCCTCACCAAGGCTTCCGCGACATTCGGCATCCCCTCAACGACGCTCTGGCAGCGCGCGCACCGCCTCGGCATCGACACGCCAAAAAAGGACGGACCGACGAAATCCTGGAGCGACGAAAGCCTAAACAACGCATTGGATGCGTTACGTACCGGTACAATATCCGCGAACAAGGCTTCGAAAGCCTTCGGCATACCCTCGAGCACGCTTTACAAGATAGCAAGGCGAGAGGGAATCAGACTGGCAGCACCGTTCAATGCTAGCCCGACGACCTGGTCACCAGCTGATCTTGATCGTGCATTGGAAGCGATAAGGTCTGGACAGACGTCTGTACAAAGGGCGTCGACAGAATTTGGCATACCCACAGGGACGCTTTATGGGAGATGCAAGAGGGAAGGTATTGAACTCAGTCGGAGCAATCCAACACCCTGGAGTGAGGATGCCATGACGGAGGCACTCGAGTCTGTTAGATTGGGCCACATGAGCATCAACCAGGCGGCGATCCACTACAACCTACCGTACTCCTCGCTCTACGGCCGCTTCAAACGCGGTAAATACGAGGAGCCGGTGGTAAGCGAGATGTCCCAGGACGGCTCGTCACAGCACTTCCATCAAAGTCCAACGCCTAACAACCACTCGTCCTCGCTGCCCGACCAGATGCCCTACCAGGGTAGCTGA
- Protein Sequence
- MRKSLLKTADQLKIKGLCEVPESREGPSVSLSSPPRDSSTPRLNFHTKLKRHHQRYKKARTNFEANGNNNNNNSRAHNHHQQDRYKEEDYVESYVRDCNKENRRECWPAEDDECMETTATTPAVVLDSCQRSNSAGGGGGGGGGGGGGGGGGGGGGSTDNNNSGSAAAANNNAAGGANSTTTNNNGDMFCHTGLGHYGHHPDPAEVDLPPETQPTPPSATLVGTTITHLRDPDHHTADIQSCDSVKVKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGSSQHFHQSPTPNNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- iTF_01464950;
- 80% Identity
- -