Stex008176.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010000048.1:15173142-15179659[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-12 2.1e-09 37.8 0.0 1 39 338 377 338 381 0.90 2 4 1.2e-11 1.7e-08 34.8 0.0 2 39 393 430 392 433 0.94 3 4 1.7e-18 2.3e-15 56.8 0.0 2 45 448 492 447 492 0.97 4 4 1.9e-18 2.7e-15 56.6 0.1 1 42 499 541 499 542 0.97
Sequence Information
- Coding Sequence
- atgagaggcattttaataaagtattgcaCTTGGGTATTACAGTCGCTCCTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAGCAGAGAGGGCCCCTCGGTGAGCTGCCTGAGCTCGCCGCCACGCGACCCCACGACCGTCGGCGCGCCTCGGCTCAACTTCACCAAGCTCAAGAGGCACCTCTCGCGTTACAAGAGGCCGCGGACCTCCTGCGAACGGAACGCCGCCACCCCCGGCGCGACcaacaataacaacaacaaccACCACCCTCACCATCACCACCGCCACCACCATCACGCCGACCCGAGCAAGTACAAGGAGGAGGACTTCGTCGAGAGCTACGTGCGCAATTGCAATAAGGAGAACCGCCGAGACTGCTGGACGACTGAAGATGACGAGTGTATGGAGACGACAGGCGGGACGACGACAGTAGTCCTGGACTCCTGCCAGCGTAGCAGCAGCGTCGGCGGCGGTGGAGGCGGAGGCGGCGGAGGCGGAGGCGGACCCGATAACAACAACAGCGGCGCCAGCAACAACGCCGCCGGTGCAACAGCGACGACAACCAACAACAACGGCGACATGTTCTGTCACACAGGCCTGGGCCACTACGGCCATCACCCGGACCCGGCCGAGGTGGACCTACCCCCGGAGACGCAGCCGACCCCGCCCAGTGCCACCCTCGTCGGCACCACCATCACCCATCTCAGAGACCCGGACCACCACACGACAGATATTCAGAATTGCGACAGTGTGAAGATAAAGTTCGAGACGCTGCACACAATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACAGGGCGAGCGTCAGCTCGAAGAATGCCGACGATAACATGATGATGATCACGCCGGAGCTGCTAGGCCTGATGCCTTCTGGCAGTTCCGTGCACTCCGATTCGGGAGAGAACAATTCGCGCAGCCATTCGGGCCAGTCGGGATCGCATCATCACGGCTCAAAGTCCTGGACGCAGGAGGACATGGACGCGGCTCTCGAAGCCCTTAGGAATCACGACATGAGTCTGACCAAAGCCTCTGCGACATTTGGTATCCCGTCGACGACTCTGTGGCAACGCGCGCACCGACTCGGCATCGACACACCGAAGAAGGACGGCCCGACTAAGTCGTGGAGCGATGAAAGCCTGAACAACGCGTTGGACGCGCTGCGCACCGGCACCATATCGGCGAATAAAGCCTCGAAGGCCTTCGGCATACCCTCGAGCACCCTGTACAAGATCGCGAGGCGAGAGGGCATTCGGTTGGCGGCCCCGTTCAATGCCAGTCCGACCACTTGGTCGCCGGCAGATCTCGATCGCGCACTCGAGGCCATCCGATCCGGTCAGACCTCTGTTCAACGCGCCTCCACGGAATTCGGCATACCCACCGGCACCCTCTACGGACGCTGCAAGCGCGAGGGCATCGAACTCAGCAGGAGCAATCCTACACCCTGGAGCGAGGATGCGATGACCGAGGCCCTCGAAGCTGTCAGGCTGGGACACATGAGCATAAATCAGGCAGCGATTCACTACAATCTTCCCTACTCGTCGTTATACGGGCGCTTCAAGCGCGGCAAGTACGAGGAGCCGGTGGTGAACGAGATGTCGCAGGACGGCTCGTCGCAGCACTTCCATCAGAGTCCGAGCCAAAATCACTCGTCCTCCCTTCCCGATCAAATGCCCTATCAGGGCAGCTGA
- Protein Sequence
- MRGILIKYCTWVLQSLLKTADQLKIKGLCEVPESREGPSVSCLSSPPRDPTTVGAPRLNFTKLKRHLSRYKRPRTSCERNAATPGATNNNNNNHHPHHHHRHHHHADPSKYKEEDFVESYVRNCNKENRRDCWTTEDDECMETTGGTTTVVLDSCQRSSSVGGGGGGGGGGGGGPDNNNSGASNNAAGATATTTNNNGDMFCHTGLGHYGHHPDPAEVDLPPETQPTPPSATLVGTTITHLRDPDHHTTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPSQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- iTF_00714286;
- 80% Identity
- -