Tdro075869.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- -
- Assembly
- GCA_030407085.1
- Location
- CM059586.1:76003549-76015584[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.1e-12 5.9e-09 37.8 0.0 1 39 318 357 318 361 0.90 2 4 9.5e-12 1.8e-08 36.3 0.1 2 39 373 410 372 413 0.94 3 4 3.5e-18 6.6e-15 56.9 0.0 2 45 428 472 427 472 0.97 4 4 4.2e-18 7.9e-15 56.6 0.0 1 42 479 521 479 522 0.97
Sequence Information
- Coding Sequence
- ATGTCGCAACCGCACCTGGCGACGAAAAGACTAACTACGTCAGAAACTAATGATTTTGGCGATGTTAAAGGaggtcaatttatttttcagtctCTGCTGAAGACGGCCGATCAACTGAAGATCAAGGGCCTCTGCGAGGTTCCGGAAAGCAGGGAGGGCCCCTCAGTAAGTCTGACATCGCCGCCCCACGATTCTAGCACACCAAGGCTGAATTTCGCCAAGCTTAAGAGACACCATCAGCGTTACAAGAGGCCAAGAACCACCTTCGAGAACCGCAACTCGGACTCGAGGCCCCCCACGCACGACAGCAGCAAGTACAAAGAAGAGGACTTCGTTGAGAGTTACGTGCGCGACTGTAACAAAGAGAACCGTAGGGATTGTGGATCGGTAGGCTGGCCAACCGAAGATGAAGAGTGTATGGAGACGACAGCGACAACCACAACAGTAGTCCTGGATAATTGCCAGCGTGAAAACAACAGCACTAACAACGTTCCCGCTacaaataacaacaacaataataataacaacaacgGTGACATGTTCTGTCATACAGGTCTTGGACATTATGGCCACCATCCCGATCCTGGGGATGTGGACCTTCCACCAGAGACGCAACCGACACCACCCAGCGCTACCCTTGTGGGTACAACAATTACGCATCTCAGGGATTCTGATCATCATTCAAcagACATTCAGAATTGTGACAGTGTCAAAGTCAAGTTTGAAACATTGCATACGATGGACTCTTCGGACACCATCGATATCGACAGTCACATGTCTGACCGAGCCAGCGTCAGTTCGAAGAATGCTGACGATAACATGATGATGATCACCCCGGAGTTACTTGGTTTGATGCCTTCCGGCAGTTCGGTACATTCAGATTCCGGAGAGAATAATTCAAGAAGTCATTCGGGACAGTCTGGATCTCATCATCATGGATCGAAGTCGTGGACTCAGGAAGATATGGATGCTGCATTGGAAGCTCTAAGGAACCATGATATGAGTCTGACGAAAGCATCAgCAACATTCGGTATTCCATCCACAACCTTGTGGCAACGGGCCCACCGGTTAGGCATCGACACGCCAAAGAAAGATGGACCAACCAAATCGTGGAGCGACGAAAGCTTGAACAATGCGCTGGAGGCGTTGCGTACCGGGACAATCTCCGCGAACAAGGCGTCGAAAGCCTTTGGGATACCGTCGAGCACCCTCTACAAGATTGCAAGGAGGGAAGGCATCCGGTTGGCTGCTCCGTTCAATGCGAGCCCGACAACTTGGTCTCCGGCTGATCTCGATCGGGCCTTGGAGGCCATTCGCTCTGGACAGACTTCGGTTCAGAGGGCGTCGACAGAATTTGGCATCCCGACCGGTACCTTGTATGGTAGATGCAAGCGAGAGGGAATCGAACTTAGTAGGAGCAATCCTACGCCGTGGAGCGAAGATGCCATGACGGAGGCCCTCGAGGCTGTCAGATTGGGACACATGAGCATAAACCAGGCGGCGATTCACTATAATTTGCCGTATTCGTCGCTGTACGGTCGCTTCAAGAGAGGAAAGTACGAGGATCCGGTGATCGACATTTCCCAGGAGGGAACGAGTCCGCACTTTCACCAGAGTCCGACTCAGAATCACTCGACCTCGCTTCCCGACCAAATGCCGTATCAGGGCAGCTGA
- Protein Sequence
- MSQPHLATKRLTTSETNDFGDVKGGQFIFQSLLKTADQLKIKGLCEVPESREGPSVSLTSPPHDSSTPRLNFAKLKRHHQRYKRPRTTFENRNSDSRPPTHDSSKYKEEDFVESYVRDCNKENRRDCGSVGWPTEDEECMETTATTTTVVLDNCQRENNSTNNVPATNNNNNNNNNNGDMFCHTGLGHYGHHPDPGDVDLPPETQPTPPSATLVGTTITHLRDSDHHSTDIQNCDSVKVKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVIDISQEGTSPHFHQSPTQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- -
- 80% Identity
- -