Basic Information

Insect: Nasonia longicornis
Gene Symbol: -
Assembly: GCA_000004795.1
Location: GL277951.1:4490136-4492675[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9.4e-13 8.7e-10 38.0 0.0 1 40 324 364 324 367 0.90

2 4 8.7e-12 8.1e-09 34.9 0.0 2 39 379 416 378 419 0.94

3 4 2.7e-19 2.5e-16 58.9 0.0 2 45 434 478 433 478 0.97

4 4 3.9e-18 3.6e-15 55.2 0.0 1 42 485 527 485 528 0.97

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9.4e-13	8.7e-10	38.0	1	40	324	364	324	367	0.90
2	4	8.7e-12	8.1e-09	34.9	2	39	379	416	378	419	0.94
3	4	2.7e-19	2.5e-16	58.9	2	45	434	478	433	478	0.97
4	4	3.9e-18	3.6e-15	55.2	1	42	485	527	485	528	0.97

Sequence Information

Coding Sequence: ATGTCGGAGGCTCTAACCGATGCTTTCACGATTTGCTTGCAGTCTCTGCTGAAGACGGCCGACCAGCTGAAGATCAAGGGTCTCTGCGAGGTGCCGGAGAGCAGGGAAGGCCCCTCGGTGAGCTTGAGCTCGCCTCCACGTGACTCCAGTACGCCCCGGCTGAACTTCGCCAAGCTCAAGAGGCATCACCCGCGCTACAAGAGGCCGCGAACCAACTACGAGTCGGGCTCCAACGCTGTCCAGTCCAGAGCCAACACGGAGTCCTCGAAACACCACCATCACCTGCATCGCCACCACGACAGCACCAAGTACAAGGACGAGGACTTTGTCGACAGCTACGTGCGCGACTCTAATAAAGAGAATCGGCGAGACTGGCCAGCTGAAGATGACGATTGCATGGAGACGACAGCGACGAGCACAACAGCAGTAGTCCTGGACTCGTGCCAGCGAAGCAGTGGCAGCGCAGGAGGAGCTGGGGGAgataacaacaacagcagcgccagcGCTAACAacaacgccgccgccggaaCCGCAGCCACCAACAACAACGGTGACATGTTCTGTCACACAGGTCTCGGTCACTACGGCCACCATCCAGACCCGGGCGAAGTAGACCTGCCACCGGAGACACAGCCGACCCCACCAAGCGCGACGCTCGTTGGCACCACCATCACTCACCTCAGGGATCCGGATCATCATACCGCAGACATCCAGAGCTGCGACAGTGTGAAGATAAAGTTCGAGACGCTGCACACGATGGATTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACAGGGCGAGCGTCAGTTCGAAAAACGCCGACGACAACATGATGATGATCACGCCAGAGCTGCTGGGACTCATGCCCTCGGGCAGTTCGGTGCACTCGGACTCCGGCGAGAACAACTCGCGCAGTCACTCGGGACAATCGGGCTCGCATCACCACGGCTCAAAGTCCTGGACGCAGGAGGACATGGACGCGGCTCTCGAGGCGCTCAGGAACCACGACATGAGCCTCACGAAAGCTTCCGCGACGTTCGGTATACCTTCCACAACGCTATGGCAGCGTGCCCACCGACTCGGCATCGAAACGCCGAAGAAGGACGGGCCCACCAAGTCCTGGAGCGACGAGAGTCTGAACAACGCTCTGGACGCGCTACGCACCGGCACGATCTCCGCCAACAAAGCTTCCAAAGCTTTCGGAATACCCTCGAGCACGCTCTACAAGATCGCGAGGCGAGAGGGCATCAGACTGGCTGCGCCGTTCAACGCGAGCCCTACGACCTGGTCGCCAGCCGATCTCGATCGAGCCCTCGAGGCTATTCGCTCCGGACAGACGAGTGTACAGAGAGCTGCTACGGAGTACGGCATTCCTAGTGGTACGCTCTACGGCAGATGCAAGAGGGAGGGCATCGAGCTCAGCAGGAGCAACCCCACGCCCTGGAGCGAGGACGCAATGACCGAGGCTCTCGAGTCCGTCAGGCTGGGACACATGAGCATAAATCAAGCGGCGATCCACTACAATCTTCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGAGGAAAGTACGAGGAGCCGGTGGTGAACGAGATGTCGCAGGATGGCTCCTCCCAGCACTTCGTCCATCAGAGCCCGACCCAGAACCACTCGTCCTCGCTTCCCGACCAAATGCCGTACCAGGGCAGCTGA
Protein Sequence: MSEALTDAFTICLQSLLKTADQLKIKGLCEVPESREGPSVSLSSPPRDSSTPRLNFAKLKRHHPRYKRPRTNYESGSNAVQSRANTESSKHHHHLHRHHDSTKYKDEDFVDSYVRDSNKENRRDWPAEDDDCMETTATSTTAVVLDSCQRSSGSAGGAGGDNNNSSASANNNAAAGTAATNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIETPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRAATEYGIPSGTLYGRCKREGIELSRSNPTPWSEDAMTEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFVHQSPTQNHSSSLPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00304983;
90% Identity: iTF_00463914;
80% Identity: iTF_01035551;