Onit013735.1
Basic Information
- Insect
- Ormyrus nitidulus
- Gene Symbol
- -
- Assembly
- GCA_900474335.1
- Location
- UCOL01001428.1:19319-26179[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-12 2.2e-09 37.6 0.0 1 39 384 423 384 427 0.90 2 4 1.1e-11 1.8e-08 34.7 0.0 2 39 439 476 438 479 0.94 3 4 1.5e-18 2.5e-15 56.7 0.0 2 45 494 538 493 538 0.97 4 4 1.7e-18 2.8e-15 56.5 0.1 1 42 545 587 545 588 0.97
Sequence Information
- Coding Sequence
- ATGATGTTACTCGCGGCGTGGGTTGCCGTTCCAGCTGAAACGATAAGACTTATTTTAGACTTGTCAATTTCAGATAAATCCGCTATCATAGAAATTTCGCTGCTGAAGACGGCCGATCAGCTGAAGATCAAGGGCCTGTGCGAGTCGCCGGAGAGCAGGGAGGGCCCCTCGGTGAGCCTGAGCTCGCCGCCGCGCAACCCGACGGGCAGCAGCGCCGGCCAGCCGGTCGGCTCGGCCTCGCCCCGGCTCAACTTCGCCAAGCTCAAGCGTCACCATCAGCGCTACAAGAGGCAGCGGGCCGCCTCGTTCGAGCCGCCTACGACCCCGCTGCCGAGCGGCAACGTCGCTCGCAACGCGGACCGCCACCACCACCATCAGCACCATCATCAGCACCTGAACCACAACAGCGCCTCCGGCTCCCACAGGCAGGACAGCGCCGACAAGTACAAGGAGGAAGACTTTGTCGAGAGCTACGTGCGCGACTGCAACAAGGAGAACCGCCGAGACTGCTGGCCAGCTAAAGATGACGAGTGCATGGAGACGACAGCGACGACCACAACAGTAGTCCTGGACCAGTGCCAACGCGGCGGCAACAGCGGCAacggcggaggcggcggcggtggaggaggaggcggcggaggcggcggcggcggcggcggcggcggcccagTGGACAACAACAACAGCGGCTCGAACAGCAACGCTGCCGGTGCGGCGAGCAACAACAACGGTGACATGTTCTGTCACACAGGTCTCGGTCACTATGGGCACCATCCGGACCCGGCGGAGGTCGACCTGCCGCCGGAGACGCAGCCGACCCCGCCTAGCGCCACCCTAGTCGGCACCGCCATCACCCACCTCAGGGATCCGGATCACCACACGACTGACATCCAGAACTGCGACAGCGTGAAGATAAAGTTCGAGACGCTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACCGGGCGAGCGTCAGCTCGAAGAACGCCGACGACAACATGATGATGATCACGCCGGAGCTGCTGGGCCTGATGCCCTCGGGCAGCTCCGTCCACTCGGACTCGGGTGAGAACAACTCGCGCAGCCACTCGGGCCAGTCCGGCTCGCATCACCACGGCTCCAAGTCCTGGACGCAGGAGGACATGGACGCCGCGCTCGAGGCCCTCAGGAATCACGACATGAGTCTCACTAAAGCTTCCGCGACATTCGGCATCCCGTCGACGACACTGTGGCAGCGAGCGCACCGACTGGGCATCGACACCCCCAAGAAGGACGGGCCGACGAAATCCTGGAGCGACGAGAGCCTGAACAACGCCCTGGACGCGCTGCGGACCGGCACGATCTCGGCGAACAAGGCCTCGAAGGCCTTCGGCATACCGTCGAGCACGCTCTACAAGATCGCGAGGCGGGAGGGCATCAGGCTGGCGGCGCCGTTCAACGCCAGCCCCACGACCTGGTCGCCAGCCGACCTCGACCGAGCCCTCGAGGCCATTCGCTCCGGTCAGACCTCCGTGCAGAGAGCCTCCACCGAGTTCGGCATACCCACGGGGACGCTTTACGGGCGCTGTAAGCGCGAGGGCATCGAGCTCAGCAGGAGCAACCCCACGCCCTGGAGCGAGGACGCTATGACGGAGGCTCTCGAGGCTGTCAGGCTGGGGCACATGAGCATAAACCAAGCAGCGATCCACTACAACCTGCCGTACTCGTCCCTGTACGGCCGCTTCAAGCGAGGCAAATACGAGGAGCCGGTGGTAAATGAGATGTCGCAGGACGGCTCGTCTCAACACTTCCACCAGAGTCCGACCCAGAATCACTCCTCGCCGCTCCCCGACCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MMLLAAWVAVPAETIRLILDLSISDKSAIIEISLLKTADQLKIKGLCESPESREGPSVSLSSPPRNPTGSSAGQPVGSASPRLNFAKLKRHHQRYKRQRAASFEPPTTPLPSGNVARNADRHHHHQHHHQHLNHNSASGSHRQDSADKYKEEDFVESYVRDCNKENRRDCWPAKDDECMETTATTTTVVLDQCQRGGNSGNGGGGGGGGGGGGGGGGGGGGGPVDNNNSGSNSNAAGAASNNNGDMFCHTGLGHYGHHPDPAEVDLPPETQPTPPSATLVGTAITHLRDPDHHTTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSPLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- iTF_01110021;
- 80% Identity
- -