Tsar001811.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- -
- Assembly
- GCA_002249905.1
- Location
- NNAY01001962.1:154-4655[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.2e-13 8.8e-10 37.9 0.0 1 40 341 381 341 384 0.90 2 4 4.8e-12 8.2e-09 34.8 0.0 2 39 396 433 395 436 0.94 3 4 1.5e-19 2.6e-16 58.9 0.0 2 45 451 495 450 495 0.97 4 4 2.1e-18 3.7e-15 55.2 0.0 1 42 502 544 502 545 0.97
Sequence Information
- Coding Sequence
- ATGCAAAAAAGAaggggaaaaaagcgagcgacgcgaattcgaatttcccgccaaAAAGCTCTAACCGAAGCTTTCACGATTCGCTTGCAGTCTCTGCTGAAGACGGCCGACCAGCTGAAGATCAAGGGTCTCTGCGAGGTGCCGGAGAGCAGGGAAGGCCCCTCGGTGAGCTTGAGCTCGCCTCCACGTGACTCCAGTACGCCCCGGCTGAACTTTGCCAAGCTCAAGAGGCATCACCCGCGCTACAAGAGGCCGCGAACCAACTACGAGTCGGGCTCCAACGCTGCCCAGTCCAGAGCCAACACGGAGTCCTCGAAACACCACCATCACCTGCATCGCCACCACGACAGCGCCAAGTACAAGGACGAGGACTTTGTCGACAGCTACGTGCGCGACTCGAATAAAGAGAATCGGCGAGACTGGCCAGCTGAAGATGACGATTGCATGGAGACGACAGCGACGAGCACAACAGCAGTAGTCCTGGACTCGTGCCAGCGAAGCAGTGGCAGCGCAGGAGGAGCTGGGGgagacaacaacaacagcagcgccaGCGCTAACAacaacgccgccgccgccggaaCCGCAGCCACCAACAACAACGGTGACATGTTCTGTCACACAGGTCTCGGTCACTACGGCCACCATCCAGACCCAGGCGAAGTAGACCTGCCACCGGAGACACAGCCGACCCCACCAAGCGCGACGCTCGTTGGCACCACCATCACTCACCTCAGGGATCCGGATCATCATACCgcagACATCCAGAGCTGCGACAGTGTGAAGATAAAGTTCGAGACGCTGCACACGATGGATTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACAGGGCGAGCGTCAGCTCGAAAAACGCCGACGACAACATGATGATGATCACGCCAGAGCTGCTGGGACTCATGCCCTCGGGCAGTTCGGTGCACTCGGACTCCGGTGAGAACAACTCGCGCAGTCACTCGGGACAGTCGGGCTCGCATCACCACGGCTCAAAGTCCTGGACGCAGGAGGACATGGACGCGGCTCTCGAGGCGCTCAGAAACCACGACATGAGCCTCACGAAAGCCTCCGCGACGTTCGGTATACCTTCCACAACGCTATGGCAGCGTGCCCACCGACTCGGCATCGAAACGCCGAAGAAGGACGGGCCCACCAAGTCCTGGAGCGACGAGAGTCTGAACAACGCTCTGGACGCGCTACGCACCGGCACGATCTCCGCCAACAAGGCCTCCAAAGCTTTCGGAATACCCTCGAGCACGCTCTACAAGATCGCGAGGCGAGAGGGTATCAGACTGGCTGCACCGTTCAACGCGAGCCCCACGACCTGGTCGCCAGCCGATCTCGATCGAGCCCTCGAGGCTATTCGCTCCGGACAGACGAGTGTACAGAGAGCTGCCACGGAGTACGGCATTCCTAGTGGTACGCTCTACGGCAGATGCAAGAGGGAGGGCATCGAGCTCAGCAGGAGCAACCCCACGCCCTGGAGCGAGGACGCAATGACCGAGGCTCTCGAGTCCGTCAGGCTGGGCCACATGAGCATAAATCAAGCGGCGATCCACTACAATCTTCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGAGGAAAGTACGAGGAGCCGGTGGTGAACGAGATGTCGCAGGACGGCTCCTCCCAGCACTTCGTCCATCAGAGCCCGACCCAGAACCACTCGTCCTCGCTTCCCGACCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MQKRRGKKRATRIRISRQKALTEAFTIRLQSLLKTADQLKIKGLCEVPESREGPSVSLSSPPRDSSTPRLNFAKLKRHHPRYKRPRTNYESGSNAAQSRANTESSKHHHHLHRHHDSAKYKDEDFVDSYVRDSNKENRRDWPAEDDDCMETTATSTTAVVLDSCQRSSGSAGGAGGDNNNSSASANNNAAAAGTAATNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIETPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRAATEYGIPSGTLYGRCKREGIELSRSNPTPWSEDAMTEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFVHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- iTF_00463914;
- 80% Identity
- -