Csem001373.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- -
- Assembly
- GCA_900474235.1
- Location
- UCQR01073614.1:1835-4490[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-12 1.6e-09 37.9 0.0 1 39 322 361 322 365 0.90 2 4 2.3e-11 1.3e-08 35.0 0.0 2 39 377 414 376 417 0.94 3 4 0.0086 4.8 7.5 0.0 2 17 432 447 431 454 0.89 4 4 6.8e-16 3.8e-13 49.5 0.0 5 42 465 503 463 504 0.97
Sequence Information
- Coding Sequence
- ATGCTTTTATACGATATAAGATATAGATGTTCTCTGCTGAAGACGGCCGACCAGCTGAAGATCAAGGGTCTCTGCGAGGTGCCGGAGAGCAGGGAAGGCCCGTCGGTGAGCTTGAGCTCACCTCCGCGTGACTCCAGTACACCCAGGCTGAACTTCGCCAAGCTCAAGAGGCACCATCAGCGCTACAAGAGGCCGCGAACCAACTTCGAGCCGGGCTCCAACGCTGCCCAGTCCCGAGCCAACACGGAGTCGTCGAAACACCATCGTCACAATTCGCATCGTCATCACGACAATACCAAGTACAAGGACGAGGACTTTGTCGACAGCTACGTGCACGACTGCAATAAAGAGAATCGGCGAGACTGGCCAGCTGAAGATGACGATTGCATGGAGACGACAGCGACGAGCACAACAGCAGTAGTCCTGGACTCGTGCCAGCGTAGCAGCGGCAGCGCAGGAGGAGCTGGAGGAGACAACAACAATAGCAGCGCCAGCACTAACAacaacgccgccgccgccggaaCCGCAACCACCAACAACAACGGTGACATGTTCTGTCACACAGGTCTCGGTCACTACGGCCATCATCCAGACCCAGGCGAAGTAGACTTGCCACCGGAGACACAGCCGACCCCACCAAGCGCGACACTCGTTGGTACCACCATCACTCACCTCAGGGATACGGATCATCATACGGCAGACATCCAGAGCTGCGACAGTGTGAAGATAAAGTTCGAGACGCTGCACACGATGGATTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACAGGGCGAGCGTCAGTTCGAAAAACGCCGACGAcaatatgatgatgataacgCCCGAGCTACTGGGACTCATGCCCTCAGGCAGTTCGGTACACTCGGACTCCGGGGAGAACAACTCGCGCAGTCACTCGGGACAATCGGGTTCCCACCACCATGGCTCCAAATCTTGGACGCAGGAGGACATGGACGCGGCTCTCGAGGCGCTCAGGAACCACGACATGAGCCTGACGAAAGCTTCCGCGACGTTCGGTATACCTTCCACAACGCTCTGGCAGCGTGCCCACCGGCTCGGCATCGACACGCCGAAGAAAGACGGACCCACCAAGTCCTGGAGCGACGAGAGTCTGAACAACGCCCTGGACGCACTGCGCACCGGCACGATCTCCGCCAACAAGGCTTCCAAAGCTTTCGGAATACCCTCGAGCACGCTCTACAAAATCGCGAGGCGAGAGGGCATCAGACTGGCTGCACCATTCAACGCGAGTCCGACGACCTGGTCACCAGCCGATCTCGATCGAGCCCTCGAGGCCATTCGCGCCGGACAGACGAATGCAAGAGAGAGGGCATCGAGCTCAGCNNNNNNNNNNNNNNNNNNNNCAATGACCGAGGCTCTCGAGTCCGTAAGGTTGGGTCACATGAGCATAAATCAAGCAGCGATCCACTACAATCTGCCGTACTCGTCGCTGTACGGTCGCTTCAAGCGAGGCAAGTACGAGGAGCCGGTGGTGAACGAGATGTCGCAGGATGGCTCTTCCCAGCACTTCGTCCACCAGAGCCCGACCCAGAATCACTCGTCCTCGCTTCCCGACCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MLLYDIRYRCSLLKTADQLKIKGLCEVPESREGPSVSLSSPPRDSSTPRLNFAKLKRHHQRYKRPRTNFEPGSNAAQSRANTESSKHHRHNSHRHHDNTKYKDEDFVDSYVHDCNKENRRDWPAEDDDCMETTATSTTAVVLDSCQRSSGSAGGAGGDNNNSSASTNNNAAAAGTATTNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHTADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRAGQTNARERASSSAXXXXXXXMTEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFVHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- iTF_00286240;
- 80% Identity
- -