Opom022719.1
Basic Information
- Insect
- Ormyrus pomaceus
- Gene Symbol
- -
- Assembly
- GCA_900474385.1
- Location
- UCOM01001047.1:19779-26650[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-12 1.6e-09 37.7 0.0 1 39 364 403 364 407 0.90 2 4 1e-11 1.3e-08 34.8 0.0 2 39 419 456 418 459 0.94 3 4 1.4e-18 1.8e-15 56.7 0.0 2 45 474 518 473 518 0.97 4 4 1.6e-18 2e-15 56.5 0.1 1 42 525 567 525 568 0.97
Sequence Information
- Coding Sequence
- ATGAAGATACTCGCGGCGTGGGTTGCCGTTCCAGCTGAAAATGATAAGACTTATTTTAGACTTTCGCTGCTGAAGACGGCCGATCAGCTAAAGATCAAGGGCCTGTGCGAGTCGCCGGAGAGCAGGGAGGGCCCCTCGGTGAGCCTGAGCTCGCCGCCGCGCAACCCGACGGGCAGCAGCGCCGGCCAGCCGGTCGGCTCGGCCTCGCCTCGGCTCAACTTCGCCAAGCTCAAGCGTCACCATCAGCGCTACAAGAGGCAGCGGGCCGCCTCGTTCGAGCCGCCTACGACCCCACTGCCGAGCGGCGCTCGCGGCGCGGACCGTCACCACCACCATCACCAGCACCATCAGCACCTGAACCACAACAGCGCCTCCGGCTCCCACAGGCAGGACAACAACGACAAGTATAAGGAGGAGGACTTTGTCGAGAGCTACGTGCGCGACTGCAACAAGGAGAACCGCCGAGACTGCTGGCCAGCTAAAGATGACGAGTGCATGGAGACGACAGCGACGACCACAACAGTAGTCCTGGACCAGTGCCAACGCGGCGGCAACAGCGGCAacggcggaggcggcggcggtggaggaggaggcggcggaggcggcggcggcggcggcggcggcggcccagTGGACAACAACAACAGCGGCTCGAACAGCAACGCTGCCGGTGACATGTTCTGTCACACAGGTCTCGGTCACTATGGGCACCATCCGGACCCGGCGGAGGTCGACCTGCCGCCGGAGACGCAGCCGACCCCGCCTAGCGCCACCCTAGTCGGCACCACCATCACCCACCTCAGGGATCCGGATCACCACACGACTGACATCCAGAACTGCGACAGCGTGAAGATAAAGTTCGAGACGCTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACCGGGCGAGCGTCAGCTCGAAGAACGCCGACGACAACATGATGATGATCACGCCGGAGCTGCTGGGCCTGATGCCCTCGGGCAGCTCCGTGCACTCGGACTCGGGTGAGAACAACTCGCGCAGCCACTCGGGCCAGTCCGGCTCGCATCACCACGGCTCCAAGTCCTGGACGCAGGAGGACATGGACGCCGCGCTCGAGGCCCTCAGGAATCACGACATGAGTCTCACTAAGGCTTCCGCGACATTCGGCATCCCGTCGACGACACTGTGGCAGCGAGCGCACCGACTGGGCATCGACACCCCCAAGAAGGACGGCCCGACGAAATCCTGGAGCGACGAGAGCCTGAACAACGCCCTGGACGCGCTGCGGACCGGCACGATCTCGGCGAACAAGGCCTCGAAGGCCTTCGGCATACCGTCGAGCACGCTCTACAAGATCGCGAGGCGGGAGGGCATCAGGCTGGCGGCGCCGTTCAACGCCAGCCCCACGACCTGGTCGCCAGCCGACCTCGACCGAGCCCTCGAGGCGATTCGTTCCGGTCAGACCTCCGTGCAGAGAGCGTCCACCGAGTTCGGCATACCCACAGGGACGCTTTACGGACGCTGCAAGCGCGAGGGCATCGAGCTCAGCAGGAGCAACCCCACGCCCTGGAGCGAGGACGCTATGACGGAGGCTCTCGAGGCTGTCAGGCTGGGGCACATGAGCATAAACCAAGCAGCGATCCACTACAACCTGCCGTACTCGTCCCTGTACGGCCGCTTCAAGCGAGGCAAATACGAGGAGCCGGTGGTAAACGAGATGTCGCAGGACGGCTCGTCTCAGCACTTCCACCAGAGTCCGACCCAGAATCACTCCTCGCCGCTCCCCGACCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MKILAAWVAVPAENDKTYFRLSLLKTADQLKIKGLCESPESREGPSVSLSSPPRNPTGSSAGQPVGSASPRLNFAKLKRHHQRYKRQRAASFEPPTTPLPSGARGADRHHHHHQHHQHLNHNSASGSHRQDNNDKYKEEDFVESYVRDCNKENRRDCWPAKDDECMETTATTTTVVLDQCQRGGNSGNGGGGGGGGGGGGGGGGGGGGGPVDNNNSGSNSNAAGDMFCHTGLGHYGHHPDPAEVDLPPETQPTPPSATLVGTTITHLRDPDHHTTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSPLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- iTF_01110021;
- 80% Identity
- -