Cfun010723.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- -
- Assembly
- GCA_900474305.1
- Location
- UCOJ01000101.1:199212-201805[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-12 1.3e-09 37.7 0.0 1 39 347 386 347 390 0.90 2 4 1.1e-11 1e-08 34.8 0.0 2 39 402 439 401 442 0.94 3 4 3.8e-18 3.5e-15 55.5 0.0 2 45 457 501 456 501 0.97 4 4 5.1e-18 4.6e-15 55.1 0.0 1 42 508 550 508 551 0.97
Sequence Information
- Coding Sequence
- ATGCTTTTTTACGATAAGATAGAATGTAGATACTTGcatttgaattcaaatttcccgccaaaaagCTCTAACCAAGCTTTCACGATTTGCTTACAGTCTCTACTGAAAACGGCCGACCAGCTGAAGATCAAGGGTCTCTGCGAGGTGCCGGAGAGCAGGGAAGGCCCTTCGGTGAGCTTGAGCTCACCTCCACGTGACTCCAGTACACCTCGGGTGAACTTCGCCAAGATCAAGAGGCACCATCAGCGCTACAAGAGGCCGCGAACCAACTTCGAACCAGGTTCCAACGCTGCCCAGTCTCGAGCCAACACGGAGTCGTCGAAACACCATCATCACCTACATCGTCATCACGACAATACCAAGTACAAGGACGAGGACTTTGTCGACAACTACGTGCGCGACTGCAATAaagagAATCGGCGAGACTGGCCAGCTGAAGATGACGATTGCATGGAGACGACAGCGACGAGCACAACAGCAGTAGTCCTGGACTCGTGCCAGcggagcagcggcagcgcagGAGGAGCTGGTGGAGgagacaacaacaacagcagcagcagcgccaacGCTAACAacaacgccgccgccgccggtacCGCAACCACCAACAACAACGGTGACATGTTCTGTCACACAGGTCTCGGTCACTACGGCCATCATCCAGACCCAGGTGAAGTAGACTTGCCACCAGAGACACAGCCAACGCCACCAAGCGCAACACTCGTCGGTACCACCATCACTCATCTCAGGGATACGGATCATCATACGGCAGACATCCAGAGCTGCGGCGACAGTGTGAAGATTAAGTTCGAGACGTTACACACGATGGATTCGTCGGATACGATCGACATCGACAGCCACATGTCTGACAGGGCGAGCGTCAGTTCGAAAAACGCAGACGATaatatgatgatgataacgCCCGAGTTACTAGGACTCATGCCATCAGGCAGTTCGGTACACTCGGACTCCGGTGAGAATAACTCGCGCAGTCACTCAGGACAATCGGGTTCCCATCACCATGGCTCCAAGTCTTGGACGCAGGAGGACATGGACGCGGCACTCGAGGCGCTCAGGAACCACGATATGAGTCTCACGAAAGCTTCCGCGACGTTCGGTATACCTTCCACAACGCTCTGGCAGCGTGCCCACCGGCTCGGCATCGACACGCCGAAGAAGGACGGGCCTACCAAGTCCTGGAGCGACGAGAGTCTGAACAACGCCCTGGACGCACTACGCACCGGTACGATCTCCGCCAACAAGGCTTCCAAAGCTTTCGGCATACCCTCGAGCACACTTTACAAAATAGCGAGGCGGGAGGGCATAAGACTGGCGGCACCATTTAACGCAAGCCCGACGACCTGGTCGCCAGCCGATCTCGATCGAGCCCTCGAGGCTATTCGCGCCGGCCAGACGAGTGTACAGAGGGCTTCCACGGAGTATGGTATTCCAACCGGTACACTCTATGGCAGATGCAAGAGGGAGGGCATCGAGCTCAGCAGGAGCAACCCTACGCCCTGGAGCGAAGACGCAATGACCGAGGCTCTCGAGTCCGTCAGGTTGGGTCACATGAGCATAAATCAAGCAGCGATTCACTACAATCTTCCGTACTCGTCGCTGTACGGTCGCTTCAAGCGAGGAAAGTACGAGGAGCCGGTGGTGAACGAGATGTCGCAGGACGGCTCTTCCCAGCACTTCGTCCATCAGAGCCCGACCCAGAATCACTCGTCCTCGCTTCCCGACCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MLFYDKIECRYLHLNSNFPPKSSNQAFTICLQSLLKTADQLKIKGLCEVPESREGPSVSLSSPPRDSSTPRVNFAKIKRHHQRYKRPRTNFEPGSNAAQSRANTESSKHHHHLHRHHDNTKYKDEDFVDNYVRDCNKENRRDWPAEDDDCMETTATSTTAVVLDSCQRSSGSAGGAGGGDNNNSSSSANANNNAAAAGTATTNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHTADIQSCGDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRAGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFVHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- iTF_00287105;
- 80% Identity
- -