Othy008679.1
Basic Information
- Insect
- Ormyrus thymus
- Gene Symbol
- bab2
- Assembly
- GCA_035582935.1
- Location
- JAWWEM010000054.1:17471280-17494431[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-12 3e-09 37.4 0.0 1 39 474 513 474 517 0.90 2 4 1.4e-11 2.4e-08 34.5 0.0 2 39 529 566 528 569 0.94 3 4 1.9e-18 3.3e-15 56.4 0.0 2 45 584 628 583 628 0.97 4 4 2.2e-18 3.8e-15 56.3 0.1 1 42 635 677 635 678 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGACGAGGTTATTGGGGTGTTCATTACAGCGGAGGGATGGCCGAGCAGCACTACTGTCTGCGCTGGGACAACTACCAGTCGAACATGACGTCCGTGTTCCAGCAGCTACTGCAGACCGAGTCCTTCGTCGACGTCACGCTCGCCTGCAATGAGGCCTCCCTCAAGGCGCACAAGGTGGTGCTGTCGGCGTGCAGCTCGTATTTTCAGAAGCTGCTGCTCTCGAACCCCTGCAAACACCCGACCATCATCATGCCCCAGGACGTCTGCTTCAACGACctcaaatttattatcgaGTTCGTCTACAGAGGCGAGATCGATGTCTCCCAGGCGGAGCTTCAGTCGCTGCTGAAGACGGCCGATCAGCTAAAGATCAAGGGCCTGTGCGAGTCGCCGGAGAGCAGGGAGGGCCCCTCGGTGAGCCtgagctcgccgccgcgcaaCCCGACGGGCAGCGCCGGCCAGCCAGTCGGCTCGGCCTCGCCTCGGCTCAACTTCGCCAAGCTCAAGCGCCACCACCAGCGCTACAAGAGGCAGCGCGCCGCCTCCTTCGAGCCGCCGACGACCCCActgccgagcggcggcggcgtcgtaGCCGCCCGGAACGCGGACCggcaccaccaccaccaccaccaccaccaccagccgcagcagcagcacctgAACCACAACAGCGCCTCCGGCTCCCACAGGCAGGACAACCCCGACAAGTACAAGGAGGAGGACTTTGTCGAGAACTACGTGCGCGACTGCAACAAGGAGAACCGCCGAGACTGCTGGCCAGCTAAAGATGACGAGTGCATGGAGACGACAGCGACGACCACAACAGTAGTCCTGGACCAGTGCCaacgcagcggcagcggcaacggcggaggcggcggcggcggcggcggtggaggaggaggcggcggcggcggcggcggcggcccagTGGACAACAACAACAGCGGCTCGAACAGCAACGCTGCCGGTGCGGGGAGCAACAACAACGGTGACATGTTCTGTCACACAGGTCTCGGTCACTATGGGCACCATCCGGACCCGGCGGAGGTCGACCTGCCGCCGGAGACGCAGCCGACCCCGCCCAGCGCCACCCTAGTCGGCACCACCATCACCCACCTCAGGGATCCGGATCACCACACGACTGTTACAGACATCCAGAACTGCGACAGCGTGAAAATAAAGTTCGAGACGCTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACCGGGCGAGCGTCAGCTCGAAGAACGCCGACGACAACATGATGATGATCACGCCGGAGCTGCTGGGCCTGATGCCCTCGGGCAGCTCCGTGCACTCGGACTCGGGGGAGAACAACTCGCGCAGCCACTCGGGCCAGTCCGGCTCGCATCACCACGGCTCCAAGTCCTGGACGCAGGAGGACATGGACGCCGCGCTCGAGGCGCTCAGGAATCACGACATGAGTCTTACTAAAGCTTCCGCGACATTCGGCATCCCGTCGACGACGCTGTGGCAGCGAGCGCACCGACTGGGCATCGACACCCCCAAGAAAGACGGCCCGACGAAGTCCTGGAGCGACGAGAGCCTGAACAACGCCCTGGACGCGCTGCGGACGGGCACGATCTCGGCGAACAAGGCCTCGAAGGCCTTCGGCATACCGTCGAGCACGCTCTACAAGATCGCGAGGCGGGAGGGCATCAGGCTCGCGGCGCCGTTCAACGCCAGTCCCACGACCTGGTCGCCAGCCGACCTGGACCGAGCCCTCGAGGCCATACGCTCCGGCCAGACCTCCGTGCAGAGGGCCTCCACCGAGTTCGGCATACCCACCGGGACGCTCTACGGGCGCTGCAAGCGCGAGGGCATCGAGCTCAGCAGGAGCAACCCCACGCCCTGGAGCGAGGACGCTATGACGGAGGCGCTCGAGGCTGTTAGGCTGGGGCACATGAGCATAAACCAAGCAGCGATCCACTACAACCTGCCGTACTCGTCGCTGTACGGTCGCTTCAAGCGAGGCAAATACGAGGAGCCGGTGGTAAACGAGATGTCGCAGGACGGCTCGTCTCAACACTTCCACCAGAGTCCGACCCAGAATCACTCCTCGCCGCTCCCCGACCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MEGRGYWGVHYSGGMAEQHYCLRWDNYQSNMTSVFQQLLQTESFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCESPESREGPSVSLSSPPRNPTGSAGQPVGSASPRLNFAKLKRHHQRYKRQRAASFEPPTTPLPSGGGVVAARNADRHHHHHHHHHQPQQQHLNHNSASGSHRQDNPDKYKEEDFVENYVRDCNKENRRDCWPAKDDECMETTATTTTVVLDQCQRSGSGNGGGGGGGGGGGGGGGGGGGGPVDNNNSGSNSNAAGAGSNNNGDMFCHTGLGHYGHHPDPAEVDLPPETQPTPPSATLVGTTITHLRDPDHHTTVTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSPLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- iTF_01110021;
- 80% Identity
- iTF_01113559;