Csis038453.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465099.1:4400029-4412808[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-12 3.3e-09 37.6 0.0 1 39 399 438 399 442 0.90 2 4 8.3e-12 2.7e-08 34.7 0.0 2 39 454 491 453 494 0.94 3 4 1.2e-18 3.7e-15 56.6 0.0 2 45 509 553 508 553 0.97 4 4 3.7e-18 1.2e-14 55.0 0.0 1 42 560 602 560 603 0.97
Sequence Information
- Coding Sequence
- ATGGCCGATACCGCTGCGACGTCGTACACGACGGTTTATCCGAACCACTATACCAGAGCAGCATTGCCGTCGTCGTCGGTGCCTCAGCcgtcgccgccaccgccgccgccccGTCAATTATCGCTGTTGAAGACGGCCGATCAGCTAAAGATCAAAGGTCTGTGCGAGGTGCCGGAGAGCAGGGAAGGTCCTTCGGTAAGCCTGAGCTCGCCACCCCGCGACTCCAGCACGCCCCGGCTCAACTACACCAAGCTCAAGAGGCATCATCCCCGTTACAAGAGGCCCCGCGTCGCCTCCACCatcaataacaacaataacaataacaacaataacaacaacaacaattgCGAGGGCGTACGCTCGGTAACCGCAAACACGGAGCAGTCCCGGAATCATCATCACCACAGTAACCATTTCCATCATCAGCAGCAGCTGctccatcatcatcatcatcatcgccACGCCGATCCCTCGAAGTACAAAGAGGAAGATTACGTCGAGAGCTACGTGCGCGACTGTAACAAAGAGaaTCGTCGAGACTGCTGGCCAGCCGCTGAAGATGACGATTGCATGGAGACGACAGCGACGAGCACAACAGTAGTCCTGGACTCGTGCCAGCGCAGTAATAGCGGAGGCGGtggaggcggcggcggcggcggaggCGGAGGCGGAGGCGGAGGCGGCAGTGGCGGAGGTGGCGGAGGCGATAACAACAACAGCGGCGCGAGCAACAACAACGCCGCCAGCGGCGGCGCTACCACTACCAACAACAACGGTGACATGTTCTGTCACACAGGTCTAGGCCATTACGGCCATCATCCAGATCCAGCCGAGGTTGACTTACCGCCAGAGACACAACCGACCCCGCCCAGCGCTACCCTCGTTGGTACCACCATAACTCATCTAAGAGATCCGGATCATCACACGGCAGATATTCAAAACTGCGACAGCGTAAAGATAAAATTCGAGACCTTACACACGATGGATTCGTCGGACACGATCGACATAGACAGCCACATGTCCGATCGAGCGAGCGTTAGCTCGAAGAACGCGGACGATAACATGATGATGATAACGCCCGAGCTTTTAGGCCTCATGCCTTCCGGCAGCTCGGTTCACTCGGATTCTGGCGAGAATAATTCGCGCAGTCATTCGGGACAATCGGGCTCGCATCATCACGGTTCGAAATCATGGACGCAAGAAGATATGGACGCCGCACTCGAAGCTCTTAGGAATCACGACATGAGTCTCACAAAAGCTTCCGCGACATTTGGCATACCTTCGACAACGCTGTGGCAGCGAGCCCATCGTCTTGGCATAGACACCCCGAAAAAGGACGGCCCGACAAAATCTTGGAGCGACGAGAGCCTTAACAATGCATTGGACGCGTTACGTACAGGCACGATCTCGGCGAACAAGGCCTCCAAAGCGTTCGGCATACCATCGAGCACGTTGTATAAAATCGCGAGGCGAGAGGGTATCAGACTCGCGGCGCCTTTCAACGCGAGTCCAACGGCTTGGTCGCCCGCGGATCTCGATCGCGCGCTCGAAGCGATACGATCCGGTCAAACATCGGTGCAACGCGCTTCCACGGAATTTGGCATACCCACGGGTACGCTGTATGGTCGCTGCAAACGCGAAGGTATCGAGCTAAGTAGAAGCAATGCTACGCCCTGGAGCGAGGACGCTATGACGGAAGCACTCGAGTCTGTTAGgTTGGGACACATGAGCATAAATCAAGCGGCAATTCACTACAATTTACCGTATTCATCGCTCTACGGACGTTTTAAGCGCGGCAAATACGAGGAGCCAGTGGAGAACGATATGTCGCAGGATGGTTCGTCGCAACATTTCCATCAGAGCCCGAGCCAGAATCACACGTCCTCGCTGCCCGATCAAATGCCCTATCAGGGCAGCTGA
- Protein Sequence
- MADTAATSYTTVYPNHYTRAALPSSSVPQPSPPPPPPRQLSLLKTADQLKIKGLCEVPESREGPSVSLSSPPRDSSTPRLNYTKLKRHHPRYKRPRVASTINNNNNNNNNNNNNNCEGVRSVTANTEQSRNHHHHSNHFHHQQQLLHHHHHHRHADPSKYKEEDYVESYVRDCNKENRRDCWPAAEDDDCMETTATSTTVVLDSCQRSNSGGGGGGGGGGGGGGGGGGSGGGGGGDNNNSGASNNNAASGGATTTNNNGDMFCHTGLGHYGHHPDPAEVDLPPETQPTPPSATLVGTTITHLRDPDHHTADIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTAWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNATPWSEDAMTEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVENDMSQDGSSQHFHQSPSQNHTSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304983;
- 90% Identity
- -
- 80% Identity
- -