Cido008719.1
Basic Information
- Insect
- Calameuta idolon
- Gene Symbol
- retn_1
- Assembly
- GCA_030142285.1
- Location
- JARQSV010000483.1:351250-374997[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-26 8.6e-23 80.6 0.0 2 89 34 119 33 119 0.96
Sequence Information
- Coding Sequence
- ATGCCTATCGGCGCTTGTTATCAACCGGAAGAGAGCGCAGCGCTATCTCAATCTCTGGCGCACCAGAAAAAGTTGTACGAGATCAACGACGATCCGAAGAGGAAAGAATTTCTCGATGATCTCTTCAGTTATATGCAAAAACGTGGTACACCAATCAATCGACTGCCAATCATGGCCAAATCTGTACTCGACTTGTACGAACTATATAACTTAGTAATCGCTCGAGGTGGTCTGGTCGACGTGATCAACAAGAAGCTATGGCAAGAGATCATCAAGGGACTTCACTTACCTTCCAGCATCACTTCAGCAGCATTCACACTGAGGACTCAatacATGAAGTACCTGTACCCTTACGAGTGCGAGAAAAGGAGGCTGTCAACACCGGCTGAGCTTCAAGCAGCGATCGATGGAAATCGGCGCGAAGGTCGTCGCAGTAGTTACGGTGCATATGCAGGGGGCGGCGGAGGGGGTGATAGCCTCGTACAGAGAAGTCCCCACACCCCCAGCTCTCTAGCACTTCACGCACAGATGTCACCCCTGTCACTGGTAACAGCCGTAGCCGCGGGTGGACAGCATCATGGACCACAATCATTGGTGAACGGAAGTGCCGCGCACACACCGCTCCCACACCACCCCCATCATCCTCAGCATCCTCAGGGTCCATTGGGTCAGCCACCTAATTCGGgTCCAATTCCTGGAATGGCTCCAGCTGAATTCGAAGCCAGAATGGTAGAATACGTAAAGCTATTGAATAAGGAATTAAGAAGCGCCGGAGGCGGTACACCACCACCCATGATTCATCGACAGGGTAGCGCATCCCCACCTTCATCGACACCACCACGTGACAGTGCGTTCAGTGCTTTGGAAATGTCGCGGCTTACCCTATGGAACATGTACAACAATAACACCCTGTATCCTGGGGTGGGTCATCAGCCACCACTCTCACCACAGACGTCGCATTCGCCTCTGCCGCCAAACAGCAGTCCCGAACCACAGAGAGAGGCTCTCGACTTGGGTCTGAGGTCCTCGCCCATGTCCTCTTCGCCGACCAGACAGAGTCCACCGTCGTCCGGTGGCAGTGTCCAGGTAAAAAGGGAACAGGAGATCACTGGTACACCTGGTCCACCGCCAGCAAAGAGGTTACTCTCCGACGACGATAGTCCTGCGGAAAAATCAGTACCGGCCTTGGCAGGCACGCACATTAAGATCTCGAACAGAGgTGACGGACGCAATGGCGACAATTCCTTGGTCGTCAGTATGGAACTAAACGGTGTAATGTACCAGGGTGTGTTGTTCGCCCAGACAGAGAGCAGGAACGCGACGACGACCACGACGAGCAACAACAGCACCAAAGCACCGCGAAGCGTCGTATCGTGA
- Protein Sequence
- MPIGACYQPEESAALSQSLAHQKKLYEINDDPKRKEFLDDLFSYMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYAGGGGGGDSLVQRSPHTPSSLALHAQMSPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQHPQGPLGQPPNSGPIPGMAPAEFEARMVEYVKLLNKELRSAGGGTPPPMIHRQGSASPPSSTPPRDSAFSALEMSRLTLWNMYNNNTLYPGVGHQPPLSPQTSHSPLPPNSSPEPQREALDLGLRSSPMSSSPTRQSPPSSGGSVQVKREQEITGTPGPPPAKRLLSDDDSPAEKSVPALAGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQTESRNATTTTTSNNSTKAPRSVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00085953; iTF_01411265; iTF_00719170; iTF_01303093; iTF_01413936; iTF_01412890; iTF_01199926; iTF_00306043; iTF_00059966; iTF_01474466; iTF_00360003; iTF_00675811; iTF_01473699; iTF_00158886; iTF_01068070; iTF_00087719; iTF_00762343; iTF_01067399; iTF_00251849; iTF_00254100; iTF_00296553; iTF_00298088; iTF_00939306; iTF_00295019; iTF_00718317; iTF_00183087; iTF_00297327; iTF_00860175; iTF_01069437; iTF_01065341; iTF_01068765; iTF_01070143; iTF_00961615; iTF_00962977; iTF_00964269; iTF_00254864; iTF_00085073; iTF_01198450; iTF_00770156; iTF_01199188; iTF_01130594; iTF_01453875; iTF_00962293; iTF_00140374; iTF_00252598; iTF_00293494; iTF_00294249; iTF_00295788; iTF_00292718; iTF_00291316; iTF_01089783; iTF_00046744; iTF_00045924; iTF_00047750; iTF_00088568; iTF_00174808; iTF_01475226; iTF_01497980; iTF_01472957; iTF_01394910; iTF_01412094; iTF_00173951; iTF_00183743; iTF_01168959; iTF_00086888; iTF_00084314; iTF_01539392;
- 90% Identity
- iTF_01198450;
- 80% Identity
- -