Xvio013317.1
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- retn
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000020.1:12619504-12634662[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-19 4.2e-16 59.3 0.0 17 89 55 125 45 125 0.92
Sequence Information
- Coding Sequence
- ATGCCCGTGGGCGATCCAGCCGCCGAGGTGGATCGCGTTTTCGTGCAGAAGCTCCGAAATTCCTTCGGCATTAATTATTATAATGCGAATCCGATGAGATCTGACCGTGCCGCCGACATTCCGGGACCGGTAGCCCTCGTCTCGGACCACGCAAAGGGATTCCGAACACCGATAAATCGGCTACCGATCATGGCCAAGTCCGTGCTGGATCTGTACGAACTGTATAATTTGGTGATCGCCAGGGGCGGACTGGTCGACGTGATCAACAAGAAGCTCTGGCAGGAAATCATCAAAGGCCTCCACCTGCCATCGAGCATCACTTCCGCCGCGTTCACTCTGCGCACCCAATACATGAAGTACCTGTACCCGTACGAGTGCGAGAAGAGACGGCTGTCGACGCCCGCGGAGCTGCAAGCGGCGATCGACGGGAATCGACGGGAGGGACGCAGGAGCAGCTACGGGGCGTACGCGGCCAGCGGCGGCGCGACGGCGGAGAGCCTCGTCCAGAGGAACCCGCACACGCCCAGCTCGCTGGCGTTGCACGCGCAAATGTCACCCCTGTCGTTGGTCACGGCGGTCGCGGCCGGTGGCCAGCACCACGGTCCGCAATCGTTGGTGAACGGAAGCGCCGCGCACACACCCCTGCCTCACCACCCCCACCATCCGCAACACCCTCAGGGACTTCCAGGACAACCACCCAATACAGGACCTATTCCCGGGATGGCGCCGTCCGAGTTCGAGGCACGCATGGTCGAGTACGTGAAGCTGCTGAACAAGGAGCTGAGGAGCGCTGGCGCCGGCACACCGCCGCCCATGATCCACCGACAGGGGAGCGCGTCACCGCCATCCTCGACGCCGCCCAGGGACGGCACGTTCAGCGCCCTCGAGATGTCCCGGCTCACCTTGTGGAACATGTACAATAACAACACCCTCTACCCGGGAGTGGGCCACCAGCCACCCATGTCCCCGCAGGCCTCGCATTCCCCGGTGCCACCAGCCTCCAGCcctgaaccgcagagggaagccctCGACCTTGGACTCAGGTCGTCACCGGTGTCTTCGTCGCCAGCGAGACAAAGTTCACCCTCCTCGGGAGGTAGCATGCAAGTGAAGAGGGATCCGGATCTGACCGGCACACCTGGACCCCCGCCGGCTAAGAGGTTACTCTCGGATGACGACAGCCCGCTCGAGAAGAGTGCCACGGCTTCTATAGGGACGCACATTAAAATTTCCAATCGGGGTGACGGGAGAAGCGGTGACAATTCCTTAGTGGTCAGTATGGAACTGAACGGAGTGATGTACCAGGGTGTTTTGTTCGCTCAGAGCGACAGTAGGTCCGCGAACAGTACGGCGACCAGCAGCAATAGCAACGCGAAAGCGTCGCGGAGCATGGTCTCGTGA
- Protein Sequence
- MPVGDPAAEVDRVFVQKLRNSFGINYYNANPMRSDRAADIPGPVALVSDHAKGFRTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYAASGGATAESLVQRNPHTPSSLALHAQMSPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQHPQGLPGQPPNTGPIPGMAPSEFEARMVEYVKLLNKELRSAGAGTPPPMIHRQGSASPPSSTPPRDGTFSALEMSRLTLWNMYNNNTLYPGVGHQPPMSPQASHSPVPPASSPEPQREALDLGLRSSPVSSSPARQSSPSSGGSMQVKRDPDLTGTPGPPPAKRLLSDDDSPLEKSATASIGTHIKISNRGDGRSGDNSLVVSMELNGVMYQGVLFAQSDSRSANSTATSSNSNAKASRSMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00253343;
- 90% Identity
- iTF_00360003;
- 80% Identity
- -