Ttro008871.1
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- retn
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010000518.1:388898-411393[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-26 8.6e-23 80.7 0.0 2 89 19 104 18 104 0.96
Sequence Information
- Coding Sequence
- ATGTgtcACTTTTATCGTGTCTTACAGTTGTACGAGATCAACGACGATCCGAAGAGGAAAGAATTTCTCGATGATCTCTTCAGTTATATGCAAAAACGTGGTACACCAATCAATCGACTGCCAATCATGGCCAAGTCTGTACTCGACTTGTACGAACTGTATAACTTAGTAATCGCTCGAGGTGGTCTGGTCGACGTGATCAACAAGAAGCTATGGCAAGAGATCATCAAGGGACTTCACTTACCTTCCAGCATAACTTCAGCAGCATTCACACTGAGGACTCAATACATGAAGTACCTGTACCCTTACGAGTGCGAAAAAAGGAGGCTGTCAACACCGGCAGAGCTTCAAGCAGCGATCGATGGAAATCGGCGTGAAGGTCGTCGCAGCAGTTACGGTGCATACGCAGGGGGTGGCGGAGGGGGTGATAGCCTGGTACAGAGAAATCCCCACACCCCGAGCTCTCTAGCACTTCACGCACAGATGTCACCCTTGTCACTGGTAACAGCCGTAGCTGCGGGTGGACAGCATCATGGACCACAATCATTGGTGAACGGAAGTGCCGCGCACACACCGCTCCCACACCATCCCCATCATCCTCAGCATCCTCAGGGTCCATTAGGTCAGCCACCTAGTTCGGGTCCAATTCCTGGAATGGCTCCAGCTGAATTTGAAGCCAGAATGGTAGAATACGTAAAACTATTGAATAAGGAATTAAGAAACGCCGGAGGCGGTACACCACCACCCATGATTCATCGACAGGGCAGCGCATCCCCACCTTCATCAACACCACCACGTGACAGTGCATTCAGTGCTTTGGAAATGTCGCGGCTTACCCTATGGAACATGTACAACAATAACACCCTCTATCCTGGGGTGGGTCATCAGCCACCACTCTCACCACAGACGTCTCATTCGCCTCTGCCGCCAAACAGCAGTCCCGAACCACAGAGAGAGGCTCTCGACTTGGGTCTGAGGTCCTCGCCCATGTCCTCTTCGCCGACCAGACAGAGTCCACCGTCATCTGGTGGCAGTGTCCAGGTAAAAAGGGAACAGGAGATCACTGGTACACCTGGTCCACCACCAGCAAAGAGGTTACTCTCCGACGACGATAGTCCTGCGGAAAAATCAGTACCAGCCTTGGCAGGCACGCACATTAAGATCTCAAACAGAGgCGATGGACGCAATGGTGACAATTCCTTGGTCGTCAGTATGGAACTAAACGGTGTAATGTACCAGGGTGTATTGTTCGCCCAGACAGAGAGCAGGAAcgcgacgacgaccacgacgaccagCAACAGCACCAAAGCACCGCGAAGCGTCGTATCGTGA
- Protein Sequence
- MCHFYRVLQLYEINDDPKRKEFLDDLFSYMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYAGGGGGGDSLVQRNPHTPSSLALHAQMSPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQHPQGPLGQPPSSGPIPGMAPAEFEARMVEYVKLLNKELRNAGGGTPPPMIHRQGSASPPSSTPPRDSAFSALEMSRLTLWNMYNNNTLYPGVGHQPPLSPQTSHSPLPPNSSPEPQREALDLGLRSSPMSSSPTRQSPPSSGGSVQVKREQEITGTPGPPPAKRLLSDDDSPAEKSVPALAGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQTESRNATTTTTTSNSTKAPRSVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00253343;
- 90% Identity
- iTF_01198450;
- 80% Identity
- -