Psmy008631.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- retn
- Assembly
- GCA_030142225.1
- Location
- JARQST010000435.1:386871-393122[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-20 2.7e-17 63.1 0.0 12 89 34 109 32 109 0.94
Sequence Information
- Coding Sequence
- ATGGCGTTTTACGCTGTCGACAACTCCAAAGCCGATCGTTCGCAAGCTCGTAAAGCTTTAGGAATTATTAGTGCCTACCCGGTACACATTGGATATATCTTCTACGTTCATAATGGTACGCCAATCAATCGACTGCCAATCATGGCCAAGTCTGTACTGGACTTGTACGAACTGTATAACCTCGTAATCGCACGAGGTGGACTGGTCGACGTGATCAACAAGAAGCTATGGCAAGAGATCATCAAGGGACTTCACTTACCTTCCAGCATCACTTCAGCAGCATTCACACTGAGGACTCAATACATGAAGTACCTGTACCCTTACGAGTGCGAGAAAAGGAGGCTGTCAACACCGGCTGAACTTCAAGCAGCGATCGATGGGAATCGCCGCGAAGGACGTCGCAGCAGTTACGGTGCTTATGCAGGGGGTGGCGGAGGGGGTGACAGTCTAGTACAGAGAAGTCCACACACCCCCAGCTCTCTAGCACTTCACGCACAGATGTCACCGTTGTCTCTGGTCACAGCGGTAGCAGCCGGTGGACAGCATCATGGACCACAATCATTGGTGAACGGAAGTGCCGCGCACACGCCGCTCCCTCACCATCCCCATCATCCACAGCATCCCCAGGGTCCGTTAGGTCAGCCACCAAATTCGGGTCCCATTCCTGGCATGGCTCCAGCTGAATTCGAAGCCAGAATGGTAGAATACGTAAAACTATTGAATAAGGAATTGAGAAGCGCCGGAGGCGGCACACCACCACCCATGATTCATCGACAGGGTAGCGCATCACCACCTTCATCAACACCACCACGTGACAGTGCGTTCAGTGCTTTGGAAATGTCGCGGCTTACCCTCTGGAACATGTACAACAATAACACCCTCTATCCTGGGGTGGGTCATCAACCGCCACTCTCACCACAGACGTCGCATTCGCCGCTGCCGCCAAACAGCAGTCCCGAACCACAGAGAGAGGCTCTCGATTTGGGTCTGAGgTCCTCGCCCATGTCCTCTTCGCCGACCAGACAGAGTCCGCCGTCATCTGGTGGGAGTGTTCAGGTAAAAAGGGAACAGGAGATCATCGGTACGCCTGGTCCACCACCAGCGAAGAGGTTACTCTCCGACGACGAGAGTCCTGCGGAAAAATCAGTACCAGCCTTGGCAGGCACGCACATCAAGATCTCAAACAGAGGTGACGGACGCAACGGTGACAATTCCTTGGTCGTCAGTATGGAGCTAAACGGTGTGATGTACCAGGGCGTATTATTCGCCCAGACGGACAGCAGGAGCGCGACGACGACCACGACGACCAACAGCAGCACCAAAGCACCACGGAGCGTCGTATCGTGA
- Protein Sequence
- MAFYAVDNSKADRSQARKALGIISAYPVHIGYIFYVHNGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYAGGGGGGDSLVQRSPHTPSSLALHAQMSPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQHPQGPLGQPPNSGPIPGMAPAEFEARMVEYVKLLNKELRSAGGGTPPPMIHRQGSASPPSSTPPRDSAFSALEMSRLTLWNMYNNNTLYPGVGHQPPLSPQTSHSPLPPNSSPEPQREALDLGLRSSPMSSSPTRQSPPSSGGSVQVKREQEIIGTPGPPPAKRLLSDDESPAEKSVPALAGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQTDSRSATTTTTTNSSTKAPRSVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00253343;
- 90% Identity
- iTF_01198450;
- 80% Identity
- -