Hnig008407.1
Basic Information
- Insect
- Hartigia nigra
- Gene Symbol
- retn
- Assembly
- GCA_031001745.1
- Location
- JARPRG010000407.1:359548-364972[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-20 6.4e-17 61.7 0.0 14 89 4 77 1 77 0.94
Sequence Information
- Coding Sequence
- ATGTACCTGCCTGAACGCCGTACCCCGATCAATCGACTGCCAATCATGGCCAAGTCTGTACTGGACTTGTACGAACTTTACAACCTGGTAATAGCACGCGGTGGTCTGGTGGACGTGATCAACAAGAAGCTATGGCAGGAGATCATCAAGGGACTTCACTTACCTTCCAGCATTACTTCTGCAGCATTCACATTGAGGACTCAATACATGAAGTACCTGTACCCTTACGAGTGCGAAAAAAGGAGGCTCTCAACGCCGGCCGAACTTCAAGCAGCGATCGATGGAAATCGCCGTGAAGGACGTCGCAGTAGTTACGGTGCATACGCCGCCGGGGTGGGCGGAGGGGCCGACAGTCTAGTACAAAGAAGTCCACACACCCCAAGCTCTCTAGCTCTTCACGCACAGATGTCACCACTGTCGCTGGTAACAGCCGTAGCCGCCGGTGGCCAGCATCACGGAGCCCAATCACTGGTGAACGGAAGTGCTGCTCACACGCCGCTCCCGCACCACCCCCATCACCCGCAGCATCCCCAGGGTCCCCTAAGTCAGCCACCGAATTCCGGTCCCATTCCTGGCATGGCTCCAGCCGAATTTGAGGCCAGAATGGTAGAATACGTAAAGCTGTTGAATAAGGAACTGAGAAGCGCCGGAGGTGGCACGCCGCCACCGATGATACATCGACAGGGTAGCGCGTCACCGCCTTCGTCGACGCCGCCGCGAGATAGCGCCTTCAGCGCTTTGGAAATGTCGCGACTTACCCTCTGGAACATGTACAACAACAACACCCTGTATCCTGGGGTGGGTCATCAGCCGCCGCTGTCGCCGCAGACGTCCCATTCGCCGCTGCCGCCTAACAGCAGTCCCGAACCACAGAGAGAGGCTCTGGATTTGGGTTTGAGGTCATCGCCCATGTCATCATCACCGACCAGACAGAGTCCGCCATCTTCCGGTGGCAGCGTTCAGGTGAAGAGGGAACAAGAGATCATCGGTACACCTGGTCCACCACCAGCGAAGAGGTTACTCTCGGACGACGAGAGTCCTGCGGAAAAGTCAGTACCAGCCTTGGCAGGGACCCACATCAAGATCTCGAACAGAGGTGACGGACGCAATGGTGACAACTCCTTGGTCGTCAGTATGGAGCTGAACGGTGTGATGTACCAGGGTGTCCTGTTTGCTCAGACCGATAGCAGGAGCTCGACGACGACCACGACgaccagcagcagcaccagcaccaAAGCACCGCGGAGCGTCGTATCGTGA
- Protein Sequence
- MYLPERRTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYAAGVGGGADSLVQRSPHTPSSLALHAQMSPLSLVTAVAAGGQHHGAQSLVNGSAAHTPLPHHPHHPQHPQGPLSQPPNSGPIPGMAPAEFEARMVEYVKLLNKELRSAGGGTPPPMIHRQGSASPPSSTPPRDSAFSALEMSRLTLWNMYNNNTLYPGVGHQPPLSPQTSHSPLPPNSSPEPQREALDLGLRSSPMSSSPTRQSPPSSGGSVQVKREQEIIGTPGPPPAKRLLSDDESPAEKSVPALAGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQTDSRSSTTTTTTSSSTSTKAPRSVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00253343;
- 90% Identity
- iTF_01198450;
- 80% Identity
- iTF_01199188; iTF_01198450;