Cpyg008821.1
Basic Information
- Insect
- Calameuta pygmaea
- Gene Symbol
- retn
- Assembly
- GCA_031762395.1
- Location
- JASANN010000385.1:364240-371712[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-21 1.1e-17 64.2 0.0 11 89 47 123 40 123 0.93
Sequence Information
- Coding Sequence
- ATGGCGGTTTACGCTGTCTGCAAATCCAAAGCCGATCGTTCGCAAGCTCGTAAAGTTTTAGGGTGGGTTTGCGCGATAGTCGCGAAATTTGTTATTACACTCGTTAACGCCAGCCCGACTGCACTCGAAACTCCCGACGAACTCGTAAAGCCTCAAGGTACACCAATCAATCGACTGCCAATCATGGCCAAATCTGTACTCGACTTGTACGAACTATATAACTTAGTAATCGCTCGAGGTGGTCTGGTCGACGTGATCAACAAGAAGCTGTGGCAAGAGATCATCAAGGGACTTCACTTACCTTCCAGCATTACTTCAGCAGCATTCACACTGAGGACTCAATACATGAAGTACCTGTACCCTTACGAGTGCGAAAAAAGGAGGCTGTCAACACCGGCTGAGCTTCAAGCAGCGATCGATGGAAATCGGCGCGAAGGTCGTCGCAGTAGTTACGGTGCATATGCAGGGGGTGGCGGAGGAGGCGATAGCCTCGTACAGAGAAGTCCCCACACCCCCAGCTCTCTAGCACTTCACGCACAGATGTCACCCTTGTCACTGGTAACAGCCGTAGCCGCGGGTGGACAGCATCATGGACCACAATCATTGGTGAACGGAAGTGCCGCGCACACACCGCTCCCACACCACCCCCATCATCCTCAGCATCCTCAGGGTCCATTGGGTCAGCCACCTAATTCGGGTCCAATTCCTGGAATGGCTCCAGCTGAATTCGAAGCCAGAATGGTAGAATACGTAAAACTATTGAATAAGGAATTAAGAAGCGCCGGGGGCGGTACGCCACCACCCATGATTCATCGACAGGGTAGCGCATCCCCACCTTCATCGACACCACCACGTGACAGTGCATTCAGTGCTTTGGAAATGTCGCGGCTTACCCTATGGAACATGTACAACAATAACACCCTCTATCCTGGGGTGGGTCATCAGCCACCACTCTCACCACAGACGTCGCATTCGCCTCTGCCGCCAAACAGCAGTCCTGAACCACAGAGAGAGGCTCTCGACTTGGGTCTGagGTCCTCGCCCATGTCCTCTTCGCCGACCAGACAGAGTCCACCGTCGTCCGGGGGCAGTGTCCAGGTAAAAAGGGAACAGGAGATCACTGGTACACCTGGTCCACCGCCAGCAAAGAGGTTACTCTCCGATGACGATAGTCCTGCGGAAAAATCAGTACCAGCCTTGGCAGGCACGCACATTAAGATCTCAAACAGAGGTGACGGACGCAATGGTGACAATTCCTTGGTCGTCAGTATGGAACTAAACGGTGTAATGTACCAGGGTGTCTTGTTCGCCCAGACAGAGAGCAGGAACGCGACGACGACCACGACGACCAGCAACAGCACCAAAGCACCGCGAAGCGTCGTATCGTGA
- Protein Sequence
- MAVYAVCKSKADRSQARKVLGWVCAIVAKFVITLVNASPTALETPDELVKPQGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYAGGGGGGDSLVQRSPHTPSSLALHAQMSPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQHPQGPLGQPPNSGPIPGMAPAEFEARMVEYVKLLNKELRSAGGGTPPPMIHRQGSASPPSSTPPRDSAFSALEMSRLTLWNMYNNNTLYPGVGHQPPLSPQTSHSPLPPNSSPEPQREALDLGLRSSPMSSSPTRQSPPSSGGSVQVKREQEITGTPGPPPAKRLLSDDDSPAEKSVPALAGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQTESRNATTTTTTSNSTKAPRSVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00253343;
- 90% Identity
- iTF_01198450;
- 80% Identity
- iTF_00252598;