Ccol027592.1
Basic Information
- Insect
- Colletes collaris
- Gene Symbol
- retn
- Assembly
- GCA_030068185.1
- Location
- JASGYR010000373.1:14731956-14737320[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.6e-20 2e-16 60.9 0.0 16 89 21 92 14 92 0.94
Sequence Information
- Coding Sequence
- ATGGGTGCAATTTTATCCCCGAACATCCGAAATACTCGTAGACAACAGTCTGTGTTGCTTTCAGGGACTCCGATCAATCGACTACCGATCATGGCGAAGTCGGTGCTGGATCTGTACGAGCTGTATAACCTGGTGATCGCTCGAGGCGGTCTGGTCGACGTAATCAACAAGAAGCTCTGGCAGGAAATCATCAAAGGCCTCCACCTGCCATCGAGCATCACTTCCGCCGCGTTCACTCTGCGCACCCAATACATGAAATACCTATACCCGTACGAGTGCGAGAAAAGACGATTATCAACGCCAGCGGAGTTACAGGCGGCGATCGATGGAAATCGTCGGGAAGGACGAAGAAGTAGCTACGGGGCGTACGCGAGCGGCGGGGGTGGAGCAGGTGACAGCTTGGTGCAAAGGAATCCGCATACGCCGAGCTCTCTCGCGTTGCACGCGCAAATATCGCCGCTGTCGTTGGTAACGGCGGTGGCAGCCGGTGGCCAACATCACGGGCCACAATCTCTGGTGAACGGCAGTGCCGCGCACACACCACTGCCCCACCATCCTCACCACCCCCAGCACCCTCAAGGACCACTTGGACAACCACCGAATACCGGACCTATACCCGGAATGGCTCCGTCCGAATTCGAAGCACGCATGGTCGAATACGTAAAGCTGTTGAACAAGGAATTGAGGAGCGCGGGTGCCGGCACCCCACCGCCGATGATCCATCGGCAAGGAAGCGCTTCTCCACCGTCGTCGACACCGCCGAGGGACGGGGCATTCAGCGCTCTCGAGATGTCCCGACTGACCCTGTGGAACATGTACAACAATAATACCCTCTACCCAGGAGTCGGTCATCAGCCACCCTTGTCGCCCCAAGCCTCCCATTCGCCTGTACCTCCAGCGTCTAGCCCGGAACCACAGAGAGAAGCTCTCGACTTGGGACTGAGGTCGTCGCCCGTGTCTTCGTCGCCTGCGAGACAAAGTTCGCCCTCCTCGGGCGGTAGCATGCAAGTGAAAAGGGATCCGGACTTAATCGGAACCCCGGGGCCTCCACCAGCAAAAAGGTTACTCTCGGACGACGACAGTCCGAACGAAAAAAATACTCCAACTTCCATAGGCACGCACATTAAAATTTCCAATCGAGGAGATGGGAGAAACGGCGACAATTCCTTGGTAGTCAGTATGGAGCTAAATGGAGTAATGTATCAAGGCGTTCTTTTCGCCCAAAACGACAGCAGGACCACGGCCAGTACGACAACCAATAACAACAATAGTACCACGAAAGCGTCGCGAAGCATTGTCTCGTGA
- Protein Sequence
- MGAILSPNIRNTRRQQSVLLSGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYASGGGGAGDSLVQRNPHTPSSLALHAQISPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQHPQGPLGQPPNTGPIPGMAPSEFEARMVEYVKLLNKELRSAGAGTPPPMIHRQGSASPPSSTPPRDGAFSALEMSRLTLWNMYNNNTLYPGVGHQPPLSPQASHSPVPPASSPEPQREALDLGLRSSPVSSSPARQSSPSSGGSMQVKRDPDLIGTPGPPPAKRLLSDDDSPNEKNTPTSIGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQNDSRTTASTTTNNNNSTTKASRSIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00253343;
- 90% Identity
- iTF_00961615; iTF_00962293; iTF_00962977; iTF_00964269; iTF_00306043; iTF_01497980; iTF_01539392; iTF_00675811;
- 80% Identity
- -