Aanc027248.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apamea anceps
Gene Symbol
-
Assembly
GCA_951799955.1
Location
OX637527.1:3044233-3082722[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2 1.7e+02 3.8 0.9 2 23 490 511 489 511 0.90
2 18 0.015 1.3 10.5 0.0 1 23 521 544 521 544 0.94
3 18 0.012 1 10.8 1.2 2 21 640 659 640 660 0.94
4 18 0.041 3.5 9.1 3.8 2 23 721 742 720 742 0.95
5 18 3.3 2.8e+02 3.1 0.9 1 23 754 778 754 778 0.89
6 18 0.00015 0.013 16.8 0.3 2 23 785 808 784 808 0.97
7 18 0.25 22 6.6 0.4 1 23 814 836 814 836 0.93
8 18 0.0039 0.33 12.3 2.9 1 23 842 864 842 864 0.98
9 18 4.9 4.1e+02 2.6 0.1 2 15 875 888 875 891 0.87
10 18 0.045 3.8 9.0 0.2 1 23 1000 1022 1000 1022 0.97
11 18 2.4 2e+02 3.6 7.2 1 23 1029 1051 1029 1051 0.95
12 18 0.0016 0.14 13.5 1.8 1 23 1095 1118 1095 1118 0.95
13 18 0.00057 0.048 15.0 0.5 1 23 1125 1148 1125 1148 0.98
14 18 0.0044 0.37 12.1 0.2 2 23 1170 1192 1169 1192 0.96
15 18 0.0066 0.56 11.6 5.2 3 23 1218 1239 1217 1239 0.96
16 18 0.00035 0.03 15.6 1.2 1 23 1264 1286 1264 1286 0.96
17 18 0.00014 0.012 16.9 0.1 1 23 1292 1314 1292 1314 0.97
18 18 0.00045 0.038 15.3 0.7 3 23 1322 1343 1320 1343 0.95

Sequence Information

Coding Sequence
ATGACGGAGCCGCAACCACCATTGATCCTCTGCATGGAGAATGCGTCGGGTGAGGACGTGGCGCTCAGGATAGAACCAGATGATAACTTCCAGATGTTTCTGGATAAGGCCAAGTCACTCCTAGGCTTCGATGTAGACATAAACTCGATAACCAGAAACCAGCCCGTTTCACTATCAGAAAACGTCTACCAATTCCTAGTAAACGCTGAACAAAACTTACAAGCAGACGAGCTAACACAAAACTTTGACCAAATGTTGGACCCCAACGATGGAGCCAACGACTTGGTCTACATATTGGACGATGGCACACAAATCCGTGCCTCACAAATACACTTCGACAATGATGATCCTTTAGTTGATCTGACAGCTGagaaaataccttttgttaaatACGCTGAAGATGTCACTGACGTAGATGTTGATGATATAAATATTCACGAAACTAAGAAGATTAATATTGTTGAAAGTCCTGTGTCCAGATGGTCAAGTAAAAACTCTAGTCCAAAATGCAGTTTTGTCAACTCGCTACCGTTCAAATTAGTGTGCAATAATACTTCGGGTTTCGAAGCTCAATTCACGAAATATTTAGAAGCGAATACAACAAAAACCTACGCGACCCTAAACCCTGTTACAACTCGAAATAAATCCCCGAAAAGTTTGATCAaagataattttaagaactacgATGATAACTATCAGAGGAATGATAACTTGTCGTACACTCGGGAGGAGATTTTGAACATGTTCAAAGACTCCCCGATGACGTCACTGCCGTATGACCAGGGTTACAGTGAGAGGAGACATGTTCGGAAGACGGATCCTTCGAGACTTGTTCATAAGAGTTGGAGTAAGCCTCTTTCTTACGTCGACATTGATGGGGTGTTGATTGGGGAGAGCGAGAGCCAAATCtgttttatttgcggcaaacatgtggATAACAATGTTGATAAATTGTACCTTTTTGATAACGAAGATCAGAGATTATATCGGTGTTCTCCGCAGAAGAAAATGTCGACTCAGCTAAAAATCATCTGCGAGGGTTGTCTTAACGAAAACTTCACTCCATGTAGAATGAAAAGCGCAAATCAATTCTTGAATCCTGATGAATACCTCGTGATCAGAAACAATCAGCAATACATCTTCCAGAAAGTTAAAAACTTCAATTTCGCGCACCTAGGTAAAGCTAAAGAAATCATAAACAAGATAGAGAAGAAAACAGACAAGGAAGAGTTTGTTAAAGTCGAAATTGGCTCTGATGGAGAAATTATTACTAAGCCCATAGACGCTAGGTCTGAtgacattattattgttaaagatGAGAAGAAGGAGGGCAGTTCGAGTGACGTAGAGATTGTAGAGCCGGAACCAGAGATAGATAATATCATAGACAATTTGGAGGAAGCTGATGAGGAGGTGAAAGAGTTTTTGGGGAAATATCAACGCGATGATAGTGAAGTTACTGAGTTAAAATGCagATTCTGTGAGCAAATCTTCTCAGACCTGGCGGCAGTGACAGATCACTGTGAAACGCACAAACATGACCTAGAAGATGGAGAAGTATTTCCTTGTCCACTCTGCAATTATGGTTATGCAAATTTAAAATGGCTGAAAGGTCATGTGAAGGCAGCTCACGAGAAGGCTGAAAcgccaaaaatattaaaagaagaaaatgaaTTGGTTAAAGAGGAGAATAAAGAGGATGAGAAGTCGGATGAAGTTACGGCTGATTCTAAAACTGAGGTGACGGAGCCACCCATCATAAAAACGGAGGTAAAGCAAGAATGCGTGGACAGCAGTGAGGATGAGATCTGGATCGTTCAGACTGCTGATGCCGAAGCCACACAGGAGCTGCAGAAATTACTCTGCAGTGCCAAGGTTAAAGGAGATGGGCAAGATGGTGAATCTGAAAAGACacctaaatgttttaattgcGGTCAGATATTCACGAACGCAGATGGCCTGTCAAGCCATCGCTGTAGAAGACGCAACCGGAAGCGGAAGTCCAAGGACAACcttatatgtatacctactgAGGAAGACTTTTTGAAGAGAGCTCAGGGTCGCCCTCGGCCAGGTGATACGTCAATAGACAGTGATCTTCTGACTATGCGGCCTCGTAAACGCCGCAGCCGGGAACCGACCTCCAACCCTCAGGTGGTGACCTGCCACAACTGTAACGAGTCCTTCACGTCCAAAGTTAGGCTCAAGTTTCATATGCAGTTCCACGAAACATCAAACCAAGCCCGGTCAGACGGGCGCTACTCCTGCTCCGAGTGTGAAAACGCCACCTTCGCCACGGAGACGGAGCTCTTCGACCACGTGCACTTCCAGCATGACAAGCAGAAGAGGTGGCAGTGCCCCGTCGAGGGCTGCGGGAAGACCTTCTTCCTCAGGGCAACCCTAACAAAGCACAGTCGCACGCACACAGACACACGACGATATGTGTGCGTCACATGTAACAAGCGGTTTTTAGACAAACAGACGCTAGATGAACATGGAGTGACGCATTTACAGATAAAACCCTTCCAATGCCACATATGCCTGAAGCAGTTAACCCGTCGCTCGCGCTTGCGTATGCATGTGCGCGCGCACGAAGAGGAGTTGGCGCCGAGGCTTGTGCGCGTCTGTGCGGTCTGCACGAGAGCCTTTAGAGATCATCGGCATGCACAGGTTGGTTATTTAACTACgctgccagtaaaaaaaaaaactgtatcagTTATTGGTGTGTTCAAACCACCACGATCATTTGAGCACGCATCAAAATCGACAGAATGTATCGAAGCTTTCGCAAACGAATTAAAAGAGGAAGCGGAAGAGGTGTCAGTACAGTTGTCGCCTACCAGTGGACTTGTCAGACATACTGTGCAGATAATTGAATCTCCGAAGCTATCAAAGCCGATCAAACGCCAAGTGTCGAATGAAATGGGCGAGCACCTCCTGTCTCAGTTAGCTGACGAAGCGCGCGCTCTTATAAGGGTGGTCGAGATTGAGAAGGCCTTCCGCTGCGAGTATTGTGAAGATGTGTTTTATTTGGAGAGCGGTCTGAACACGCACCGCGCGATACACAAAGGAGTTAAAAATCCCTTCACCTGCCACATCTGTAAAGTTAGCTTCGCTACATATTCCAGATGCACAACCCACAAAACAACCCACGGCTTCTACAAACGCTCGCTAGCCGACGCTAAGAAACAAGCCGACGGCCCCGCACAAGCTGATGCTGACTCCTCCGCACGCTCTGCCATCGGCATACTGGGATACGGCGACTTTCCTGTCGTCAAACACTTCCTATGCGAGGACTGCGGCCGCTCATACCTACACTGGACGTACCTGCAAGTACACAGACGCATGAAGCACGCGAATGAAAACTTTCTGTACAAATGTAACCAGTGCGAACTTACCTTTCCAAACagTTGGGGCCTGGCGTATCATCGTAAGAAGGTGCACGGCAAGTCTGGAGCTGACGACCCTGGAACCACCAACAAGAGCAACAGGGATGATTATAGGATACCGTGTCGGGATTGTGACGAGGTGTTGCCCAACAAAACAGCTTTGTACAAGCATCGTAAGAAAGAACACAGCGATGGAACTGCGCGAGCTTATACTAAACCAGGCATGTATGCGAGTGCAGAGTCAGAATCCACAGGCGGAGCGTGTTCCCACTGTCACGCCACATTCACGCACGCGGTTGATCTGCACAAACACGTCAAAGTAGTCCACGGTAAAGACGATGAGTCCTGCTTATCCTGCAACAAGACATCAAGCACGGGGGGGGCATGTCCGCGCCGCCCGCACGCGTGTCCGGTCTGCGGACACGCCTTCCGGACGCTTTCTATGCGGAACGAACATCTGAGGGTACACACAGGGGAGAGACCCTTTCCTTGTGACGTTTGCGGTGTTGCGTTCAGAAGGTCCACAGCCATGCGCAACCACCGCCTCATCCACACGGGCGTGCGCGCGTGGGCGTGCGGCCGCTGCCCCAAGCGCTTCCGCATCCGCTCCGACCTGCGCACGCACCTGCGGCTCAAGCATCCCGCCACCATTGTCGTTGTAGAGGTGAGCTGA
Protein Sequence
MTEPQPPLILCMENASGEDVALRIEPDDNFQMFLDKAKSLLGFDVDINSITRNQPVSLSENVYQFLVNAEQNLQADELTQNFDQMLDPNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYAEDVTDVDVDDINIHETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTTKTYATLNPVTTRNKSPKSLIKDNFKNYDDNYQRNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKSWSKPLSYVDIDGVLIGESESQICFICGKHVDNNVDKLYLFDNEDQRLYRCSPQKKMSTQLKIICEGCLNENFTPCRMKSANQFLNPDEYLVIRNNQQYIFQKVKNFNFAHLGKAKEIINKIEKKTDKEEFVKVEIGSDGEIITKPIDARSDDIIIVKDEKKEGSSSDVEIVEPEPEIDNIIDNLEEADEEVKEFLGKYQRDDSEVTELKCRFCEQIFSDLAAVTDHCETHKHDLEDGEVFPCPLCNYGYANLKWLKGHVKAAHEKAETPKILKEENELVKEENKEDEKSDEVTADSKTEVTEPPIIKTEVKQECVDSSEDEIWIVQTADAEATQELQKLLCSAKVKGDGQDGESEKTPKCFNCGQIFTNADGLSSHRCRRRNRKRKSKDNLICIPTEEDFLKRAQGRPRPGDTSIDSDLLTMRPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHETSNQARSDGRYSCSECENATFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCTRAFRDHRHAQVGYLTTLPVKKKTVSVIGVFKPPRSFEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIIESPKLSKPIKRQVSNEMGEHLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGPAQADADSSARSAIGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWGLAYHRKKVHGKSGADDPGTTNKSNRDDYRIPCRDCDEVLPNKTALYKHRKKEHSDGTARAYTKPGMYASAESESTGGACSHCHATFTHAVDLHKHVKVVHGKDDESCLSCNKTSSTGGACPRRPHACPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEVS