Dbru030529.2
Basic Information
- Insect
- Diarsia brunnea
- Gene Symbol
- -
- Assembly
- GCA_949774965.1
- Location
- OX459023.1:2816941-2859295[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0024 0.23 13.0 0.0 1 23 521 544 521 544 0.95 2 17 0.13 12 7.6 2.7 1 21 668 688 668 689 0.94 3 17 0.018 1.7 10.3 4.8 2 23 750 771 749 771 0.95 4 17 4.8 4.6e+02 2.6 2.4 1 23 783 807 783 807 0.90 5 17 0.00017 0.016 16.6 0.3 2 23 814 837 813 837 0.97 6 17 0.28 27 6.5 0.4 1 23 843 865 843 865 0.93 7 17 0.0044 0.42 12.2 2.9 1 23 871 893 871 893 0.98 8 17 0.35 34 6.2 0.4 1 19 903 921 903 924 0.89 9 17 0.63 60 5.4 0.2 1 23 1003 1025 1003 1025 0.95 10 17 2.7 2.5e+02 3.4 7.2 1 23 1032 1054 1032 1054 0.95 11 17 0.0018 0.17 13.4 1.8 1 23 1097 1120 1097 1120 0.95 12 17 0.0024 0.23 13.0 0.3 1 23 1127 1150 1127 1150 0.97 13 17 0.02 1.9 10.1 0.2 2 23 1172 1194 1171 1194 0.96 14 17 0.019 1.8 10.2 6.1 3 23 1220 1241 1219 1241 0.95 15 17 0.0003 0.029 15.8 2.0 1 23 1266 1288 1266 1288 0.96 16 17 0.00016 0.015 16.7 0.1 1 23 1294 1316 1294 1316 0.97 17 17 0.0005 0.048 15.1 0.7 3 23 1324 1345 1322 1345 0.95
Sequence Information
- Coding Sequence
- ATGACGGAGGCGCAAGCACCTTTGATACTGTGCATGGAGAACGCGATGGGTGAGGAGGTGTCACTCAGAATAGAACCAGATGATAATTTCCAGATGTTTCTGGATAAGGCCAGAACCCTGCTAGGTTACGAAGTTGACTTAAACTCAATAACCAGTAACCAACACGTCTCACTCTCAGAAAACGTCTACCAATTCCTTATCAACGCCGAACAGAACCTACAAGCTGACGACCTGACACAAAGCTTTGAACCAATGTTAGACACCAATGACGGCGCCAACGACTTGGTCTATATATTGGATGATGGCACTCAAATCCGGGCATCCCAAATTCATTTTGACAACGATGATCCGTTGGTAGACCTAACAGCAGAaaaaatacctttcgttaaATACGCAGATGACATTACTGATGTAGATTTTGACGATATCGGTGAACATGAAACGGAAATGATAAATATATGCGAAAGCCCCGTCTCTCGGTGGTCCAGTAAAAACTCTAGTCCAAAATGTAGTTTCGTCAATTCCTTACCGTTCAAACTAGTATGCAATAATACGTCCGGCTTCGAAGCTCAGTTCACGAAATATTTAGAAGCTAATAACACGAAAACTTACGCGACTTTGAACCCTGTTACAACCAGAAATAAATCTCCTAAAAGTTTGATAAAGGACAATTTTAAGAACTATGATGATAATTATCAGAGGAACGACAATTTGTCTTACACTCGAGAGGAGATACTGAACATGTTTAAAGACTCTCCGATGACGTCATTGCCTTATGACCAGGGTTATAGCGAGAGGAGACATGTACGGAAAACTGACCCTTCAAGACTAGTTCATAAGAACTGGAGCAGGCCCCTTTCCTATGTCGATATGGACGGAGTTTTGATAGGAGAAAGTGAGAgccaaatatgttttatttgcgGAAAACATGTAGATACTAAAGTGGATAAATTGTACCTTTTTGATAATGAAGACCAAAGGTTACACAGGTGTTCTCCGCAGAAGAAAATGTCGACGCAATTGAAAATTATCTGCGAATGCTGTCTCAACGAAAACTTCACTCCCTGTCGAATGAAAAGCGCTAACCAATTCTTGAACCCCGACGAATTTCTTGTTATTAGAAATAATCAGCAATACATCTtccaaaaagttaaaaacttcAATTTTACGCATTTAGGGAAACCTAAAGATACCATAAACAAGATAGAGAAGAAAATAGACAAAGAGGAGTTTGTTAAAGTCGAAATTGGTTCTGACGGAGAAATTATCACAAAACCCATAGATAATAGATCTGATGACGTCATATTAATTAAAGATGAGAATAAGGAGGGTAGTTCGAGTGACGTAGAGATTGTGGAGCCGGAACCGGAAATAGATAATATCATAGACAATTTGGAGGAGGCTGATGAGGAGGTCAAAGAGTTTCTGGGGAAATATCAAGTTGATGATAGTGAAATTACTGAATTGAAATGCAGGTTCTGTGAGCAAATATTTCCAGATCTGCTGGCTGTGGCTGATCATTGTGAGATCCACAAACATGACATGGAGGATGGCGATGTGTTTCCTTGTCCATTGTGTAATTATGgttatgCAAATTTAAAATGGCTGAAAGCACACGTGAAGGCAGCTCACGAGAAGACTAAAACCCAAAAAGgattaaaagaagaaaatgacGCTGTGAAAGAAGAGAATAAagATGATGAAGAAACTGCTAAAGCATCATCACCTATCGCTACTCGCACTAGAAGTTCCAGTAAAAAAGATGATGGTGATAGAAAAGagaATGAGAAATCACACGAAATAAAGGCTGATTCCAATACCGAAGCGCTGCCGGAGCCACCCATCATAAAAACGGAGGTAAAGCAAGAATGCCTAGACAGCAGCGAGGATGAGATCTGGATTGTTCAGACCGCTGATGCTGAAGCTTCTCAGGAGCTGCAAAATCTGCTGTGTAGTGCAAAGGTTAAAAAAGACGGGCCGGATGCTGAAGCTAAGAAGACACACAAATGTTTTAATTGCAGTCAGGTATTCGCCAACTTGGAGGGCCTGTCAAACCATCGCTGTAAACGACGGAAACGGAAGTCCAAAGACCTGGTCAACCTCATTTGTATACCTACTGAAGAAGACTTTTTGAAGAGAGCTCAGGGGCGGCCCCGACCTCCGCATACAACTATAGACAATGATCTCCTTGTTATGCTTCCCCGAAAGCGTCGCAACCGGGAACCGACTTCCGACCCTCAGGTGGTCACCTGCCACAACTGTAATAAGTCATTCACATCCAAAGTTAGACTCAAGTTTcatatGCAGTTCCACGAAACATCGAACCAATCCCGAACAAACGGCCGCTACTGTTGCTCCGAGTGTGACGACGTGACCTTCGCTACGGAGACGGAGCTGTTCGACCACGTGCACTTCCAGCATGACAAGCAGAAGAGGTGGCAGTGTCCCGTCGAGGGCTGCGGGAAGACTTTCTTCCTCAGGGCCACCCTTACAAAACACAGTCGTACGCACACAGACACGCGAAGATACGTGTGCGTTACGTGTAACAAGCGGTTTCTAGATAAACAGACCTTGGATGAGCATGGAGTCACGCATTTACAGATTAAACCCTTCCAATGCCACATATGCCTGAAGCAGCTAACCCGTCGCTCTCGTCTACGTATGCATGTACGCGCGCACGAAGAAGAACTAGCGCCGCGCCTGGTGTTCGTGTGTGCCGTCTGCACGAGGGCCTTCAGAGACCATCGGCATGCACTGGAGCACGCGACAAAATCGGCGGAATGCATCGAAGTGTTTGCCAACGAGTTAAAAGAAGAGGCGGAAGAGGTGTCCGTACAGTTGTCTCCCACCAGTGGCCTTGTGAGACACGCCGTGAAGATTGTGGAATCTCCAAAACTATCAAAGCCAATAAAGCGCCAGGTATCAGAAGACGTAGCCTCCCCACTGCTGTCTCAGTTGCCCGATGAAGCGCGCGCTCTGATCAGAGTGGTCGAGATCGAGAAGGCGTTCCGGTGCGAGTATTGTGAAGATGTGTTTTACTTGGAGGAACGTCTGAACGCCCACCGCGTGATACACAAGGGCGTCAAGAACCCTTTTACTTGCCACATCTGTAAAGTTAGCTTTGCTACTTACTCCAGATGCACAACCCACAAAACCACCCACGGTTTCTACAAGCGCTCGCTAGCCGACGCTAAGAAGCAAGCCGACGGACACGCGCAGCCCGACGCCGACTCGACACGCTCCGCTACTAACATACTGGGATACGGCGACTTTCCTGTTGTCAAACACTTTCTATGCGAGGACTGTGGCCGCTCATACCTGCACTGGACGTACCTACAAGTGCACAGGCGCATGAAACACGCGAATGAAAATTTTCTGTACAATTGTAACCAGTGCGAACTTACCTTTCCGAACAGTTGGGGCTTGGCGTACCATCGTAAGAAGGTCCACGGCAAGACCGGAGCGGACGACCCTGGCACCACCAACAAGACTAACAGGGATGATTACAGGATACCATGTCGAGATTGTAGCGAAGTGCTGCCGAACAAGACAGCTTTATACAAGCATCGGAAGAAAGAACACAGCGATGGCACTACACGGGCTTATACTAAACCAGGCATGTATACGAGCGCAGAGTCGGAACCTACGGGCGGCGCGTGTTCGCATTGTCACGCGACATTCACGCACGCTACGGACCTGCACAAACATGTCAAAGAGGTCCACGGCAAAGAAGACGACTCCTGCCAATCTTGCAACAAGACTACCACCGGAGAAAGGACATGTCCGCGCCGTCCGCACGCCTGTCCGGTCTGCGGACACACCTTTCGGACACTGTCCATGCGAAATGAACATCTGAGAGTGCACACTGGAGAGAGACCCTTTCCTTGTGATGTCTGTGGAGTTGCTTTTAGGAGGTCGACAGCCATGCGCAACCACCGTCTCATCCACACGGGCGTGCGAGCGTGGGCGTGCGGCCGCTGTCCCAAGCGGTTCCGTATCCGCTCTGACCTGCGCACACATCTGCGGCTCAAACATCCCGCTACTATCGTTGTTGTTGAGATGGAAGGCCTAAACCCGACGTCTGAAGAAGTACTAAATGTACTCGCAGGACAGAACGTTCCACACGACAAACTTATTGATATCACTAAGATGTCCTTCGCGAAGGGCTCCACCAGCGTGATCCCATCATCAGCGCGCGCACTGTCAGCGCTGAACAACGTGCCGCGCACACACGTCGCGTGCATCAAGCCTGAGCCTACGcTGGAAGAAATCCAACCGGCCCGTCGAGGTCGCGGCATCGCTAAGAACCCGCGCCGCCCCAAGATACTGCAGCGCGGGGAGGACGACACACACGACAACTCTGCCTACCCCATCGTTGGGGGAGAGGAGCTATCAGACCTGAACGTGCAGCTACTGCTCCATGGTGGCGGCGTGTTGGTCAACAGCAGCCAACTGGTACAGCTGCAGCTGGATGACCCTATACTGATGGACTAG
- Protein Sequence
- MTEAQAPLILCMENAMGEEVSLRIEPDDNFQMFLDKARTLLGYEVDLNSITSNQHVSLSENVYQFLINAEQNLQADDLTQSFEPMLDTNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYADDITDVDFDDIGEHETEMINICESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANNTKTYATLNPVTTRNKSPKSLIKDNFKNYDDNYQRNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKNWSRPLSYVDMDGVLIGESESQICFICGKHVDTKVDKLYLFDNEDQRLHRCSPQKKMSTQLKIICECCLNENFTPCRMKSANQFLNPDEFLVIRNNQQYIFQKVKNFNFTHLGKPKDTINKIEKKIDKEEFVKVEIGSDGEIITKPIDNRSDDVILIKDENKEGSSSDVEIVEPEPEIDNIIDNLEEADEEVKEFLGKYQVDDSEITELKCRFCEQIFPDLLAVADHCEIHKHDMEDGDVFPCPLCNYGYANLKWLKAHVKAAHEKTKTQKGLKEENDAVKEENKDDEETAKASSPIATRTRSSSKKDDGDRKENEKSHEIKADSNTEALPEPPIIKTEVKQECLDSSEDEIWIVQTADAEASQELQNLLCSAKVKKDGPDAEAKKTHKCFNCSQVFANLEGLSNHRCKRRKRKSKDLVNLICIPTEEDFLKRAQGRPRPPHTTIDNDLLVMLPRKRRNREPTSDPQVVTCHNCNKSFTSKVRLKFHMQFHETSNQSRTNGRYCCSECDDVTFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVFVCAVCTRAFRDHRHALEHATKSAECIEVFANELKEEAEEVSVQLSPTSGLVRHAVKIVESPKLSKPIKRQVSEDVASPLLSQLPDEARALIRVVEIEKAFRCEYCEDVFYLEERLNAHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGHAQPDADSTRSATNILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYNCNQCELTFPNSWGLAYHRKKVHGKTGADDPGTTNKTNRDDYRIPCRDCSEVLPNKTALYKHRKKEHSDGTTRAYTKPGMYTSAESEPTGGACSHCHATFTHATDLHKHVKEVHGKEDDSCQSCNKTTTGERTCPRRPHACPVCGHTFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEMEGLNPTSEEVLNVLAGQNVPHDKLIDITKMSFAKGSTSVIPSSARALSALNNVPRTHVACIKPEPTLEEIQPARRGRGIAKNPRRPKILQRGEDDTHDNSAYPIVGGEELSDLNVQLLLHGGGVLVNSSQLVQLQLDDPILMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121732;
- 90% Identity
- -
- 80% Identity
- -