Basic Information

Insect: Lacanobia oleracea
Gene Symbol: -
Assembly: GCA_950371165.1
Location: OX493413.1:13708790-13748514[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2 2.7e+02 3.8 0.6 2 23 490 511 489 511 0.89

2 17 0.0016 0.22 13.5 0.1 1 23 521 544 521 544 0.95

3 17 0.16 22 7.2 0.9 2 21 670 689 670 690 0.94

4 17 0.046 6.1 8.9 3.8 2 23 753 774 752 774 0.95

5 17 3 4.1e+02 3.2 3.0 1 23 786 810 786 810 0.91

6 17 9.1e-05 0.012 17.4 0.4 2 23 817 840 816 840 0.97

7 17 0.28 38 6.4 0.4 1 23 846 868 846 868 0.93

8 17 0.0044 0.58 12.1 2.9 1 23 874 896 874 896 0.98

9 17 7.2 9.7e+02 2.0 0.1 2 19 932 949 932 952 0.79

10 17 0.05 6.7 8.8 0.2 1 23 1031 1053 1031 1053 0.97

11 17 2.6 3.5e+02 3.4 7.2 1 23 1060 1082 1060 1082 0.95

12 17 0.0018 0.24 13.4 1.8 1 23 1132 1155 1132 1155 0.95

13 17 0.0003 0.04 15.8 0.7 1 23 1162 1185 1162 1185 0.98

14 17 0.0049 0.66 12.0 0.2 2 23 1208 1230 1207 1230 0.96

15 17 0.0046 0.61 12.1 3.1 3 23 1256 1277 1255 1277 0.94

16 17 0.00019 0.026 16.4 1.3 1 23 1302 1324 1302 1324 0.97

17 17 0.63 84 5.3 0.9 1 13 1330 1342 1330 1344 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2	2.7e+02	3.8	0.6	2	23	490	511	489	511	0.89
2	17	0.0016	0.22	13.5	0.1	1	23	521	544	521	544	0.95
3	17	0.16	22	7.2	0.9	2	21	670	689	670	690	0.94
4	17	0.046	6.1	8.9	3.8	2	23	753	774	752	774	0.95
5	17	3	4.1e+02	3.2	3.0	1	23	786	810	786	810	0.91
6	17	9.1e-05	0.012	17.4	0.4	2	23	817	840	816	840	0.97
7	17	0.28	38	6.4	0.4	1	23	846	868	846	868	0.93
8	17	0.0044	0.58	12.1	2.9	1	23	874	896	874	896	0.98
9	17	7.2	9.7e+02	2.0	0.1	2	19	932	949	932	952	0.79
10	17	0.05	6.7	8.8	0.2	1	23	1031	1053	1031	1053	0.97
11	17	2.6	3.5e+02	3.4	7.2	1	23	1060	1082	1060	1082	0.95
12	17	0.0018	0.24	13.4	1.8	1	23	1132	1155	1132	1155	0.95
13	17	0.0003	0.04	15.8	0.7	1	23	1162	1185	1162	1185	0.98
14	17	0.0049	0.66	12.0	0.2	2	23	1208	1230	1207	1230	0.96
15	17	0.0046	0.61	12.1	3.1	3	23	1256	1277	1255	1277	0.94
16	17	0.00019	0.026	16.4	1.3	1	23	1302	1324	1302	1324	0.97
17	17	0.63	84	5.3	0.9	1	13	1330	1342	1330	1344	0.90

Sequence Information

Coding Sequence: ATGACAGAGCCGCAGCCACCCCTCATTCTCTGCATGGAGAGTGCTACTGGCGAGGAAGTGTCGCTCAGGGTAGAACCTGATGATAACTTCCAGATGTTTCTTGATAAGGCCAAgtCACTTCTAGGCTATGAAGTAGATATAAACTCGATAACCAGAAACCAGCCCGTGTCCTTATCAGAAAACGTTTACCAATTTCTAGTCAACGCCGAACAAAACTTACAGGCGGACGATCTAACACAAAACTTTGATCAAATGTTGGACACCAACGATGGAGCCAACGACTTGGTCTACATTCTGGATGATGGCACTCAAATTCGCGCCTCGCAAATACACTTTGACAATGACGATCCTTTAGTAGATCTGACTGCTGAGAAAATACCTTTTGTTAAGTACGCTGACGATGTCACTGATATTGATTTTGACGATACGAGCATTCaagaaactaaaaaaattaacattgtTGAGAGTCCTGTATCTCGATGGTCTAGTAAAAATTCCAGTCCAAAATGCAGTTTTGTCAATTCTTTACCGTTCAAACTCGTATGCAATAATACCTCAGGTTTCGAAGCTCAATTCACGAAATATTTGGAAGCGAATACAATAAAAACGTACGCAACTTTGAACCCTGTAACAGCTCGGAATAAATCGCCGAAAAGTTTGATCAAAGATAATTTTAAGAACTATGATGATAGTTATCAGAGAAGTGATAACTTGTCTTACACGAGAGAGGAGATTTTGAACATGTTCAAGGACTCACCGATGACGTCATTGCCTTATGACCAGGGATATAGTGAACGGAGACATGTTAGGAAGACAGACCCTTCAAGACTTGTTCACAAGACTTGGAGCAAGCCTCTCTCTTACGTCGATATTGACGGGGTGTTGATAGGGGAGAGTGAGAGTCAAATCTGTTTTATCTGCGGCAAAAATGTTGATAATAATGTCGATAAATTGTACCTCTTTGATAATGAAGACCAGAGGCTGTATAGATGTTCCCCGCAGAAGAAAATGTCGACGCAACTGAAAATTATCTGCGAATGTTGTCTGAACGAAAATTTTACGCCGTGTCGAATGAAAAGCGCTAACCAATTCTTGAATCCTGACGAATATCTCGTGATAAGAAATAACCAGCAATACATATTCCAAAAAGTTAAAAACTTCAATTTCGCGCATCTAAGTAAAGCAAAAGATATGATAAACAAGATAGAAAAGAGAATAGACAAAGAAGAGTTTGTTAAAGTCGAAATAGGTTCAGATGGAGAAATTATTACGAAGCCCATAGACAAAAGGTCTGATGACATAGTCATTGTTAAAGATGAGAAAAGGGAGGGTAGTTCGAGTGACGTGGAGATTGTGGAGCCGGAACCGGAAATAGATCATATCATAGACAATTTGGAGGAAGCTGACGAGGAGGTGAAAGAGTTTTTGGGGAAATACCAGCGGGATGATAGTGAAGTTACTGAGTTAAAATGCAGATTCTGTGAGCAAGTCTTCCCGGACCTAGCGGCGGTGACGGACCACTGTGAAACACACAAACATGACCTGGAAGATGGCGAAGTGTTTCCGTGTCCTCTCTGCAACTATGGTTATGCCAATTTGAAATACCTGAAAGCCCATGTGAAGGCGGCTCACGAGAGACGTGAAagttctaaaatattaaaagaagaaaatgagTCTAACAAAGAGGAGAATAGAGGTGAAGATGGAACTCCTACTAAAGCTTCATCACCCATTGCGAAACGCACTCGAAGTTCTAGCAAAAAGGGAGACTGCGATGGAAAAGATAGTGAAAAGTCTTCAGAAGAATTAAAAGCAGATTCTAACACTGAGGCGACGGAGCCACCCATCATAAAAACGGAGGTAAAGCAAGAATGCCTGGACAGCAGTGAGGATGAGATCTGGATCGTCCAGACGGCTGATGCTGAGGCCACTCAGGAGCTGCAGAAACTACTGTGTAGTGCAAAGGTTAAGGAAGGTGGACAAGATGGTGCATCCGAAAAGACCCCCAAATGTTATAATTGCAGCCAAATATTCGCGAACGCAGACGGCCTGTCAAACCATCGCTGCAGAAGACGCACTCGCAAGCGGAAATCCAAAGACTTGGGCAACCTCATATGTATACCTACCGAAGAAGACTTTCTGAAGAGAGCTCAGGGTCGCCCCCGACCAGCCGATTCGTCTGTAGACAATGATTTTCTTGTTATGCGTCCCCGAAAACGCCGCAGCCGGGAACCGACCTCCAACCCTCAGGTGGTGACCTGCCACAACTGCAACGAATCCTTCACTTCTAAAGTTAGACTCAAGTTTCACATGCAGTTCCACGAAACCTCAAACAAAGCGCGCACGGACGGCCGCTACTCTTGTTCGGAGTGCGACGACGCCACCTTCTGCACGGAGACAGAACTCTTCGACCACGTGCACTTCCAACATGACAAGCAGAAACGGTGGCAATGTCCCGTCGAAGATTGCGGGAAGACCTTCTTTCTCAGAGCGACCCTCACAAAGCACAGTCGCACGCACACAGACACGCGTAGATACGTTTGTGTTACTTGCAACAAGAGGTTTCTGGACAAACAGACTCTGGATGAACATGGAGTCACGCATTTACagATCAAACCCTTCCAATGCCACATCTGCCTGAAGCAGCTGACACGTCGCTCTCGCTTACGCATGCATGTGCGCGCGCACGAAGAGGAGCTGGCGCCGCGGCTCGTGCGCGTCTGTGCGGTCTGCACGAGGGCGTTCAGAGACCATCTGCATGCACAGGAGGAGCTGGCGCCGCGGCTCGAGCGCGTCTGTGCCGTCTGCACGAGGGCGTTCAGAGACCACCTGCTCGCACAGGAACATGCGTCAAAATCGACGGAATGCATCGAAGCGTTCGCAAACGAGTTGAAAGAAGAGGCAGAAGAGGTATCAGTACAGTTGTCTCCTACCAGTGGACTCGTGAGGCATACTGTGCAGATTGTTGAATCCCCGAAGCTTTCAAAGCCAATAAAGCGGCAAGTGTCAAACGAGACGGGCGAGCCGCTGCTGGCTCAGCTCGCGGATGAAGCGCGCGCTCTCATACGAGTCGTGGAGATCGAGAAGGCTTTCCGCTGCGAGTACTGCGAAGATGTGTTCTACTTGGAAAGCGGCCTGAACACGCACCGAGCTATACACAAAGGAGTCAAGAATCCCTTCACCTGCCACATCTGTAAAGTTAGCTTCGCTACTTATTCCAGATGCACGACCCACAAAACAACCCACGGCTTCTACAAACGCTCACTAGCCGACGCTAAAAAACAAGCCGACGCCAAGAAACAAGCCGATGGACAACCGCAAGCCAACGCCGACAGCTCTGCTCGTTCAGCCGCCGGCATATTGGGCTACGGCGACTTTCCCGTTGTCAAACATTTCCTGTGCGAGGACTGCGGGCGCTCGTACCTGCACTGGACGTACCTACAAGTACACAGACGTATGAAGCACGCGAACGAAAACTTTCTCTACAAGTGTAATCAGTGCGAGCTTACATTTCCTAAcagTTGGAGCCTGGCTTACCATCGGAAGAAAGTGCACGGTAAGAACGGAGCTGACGACCCTGGAGTAGCCACTAACAAGACCAACAGAGAAGATTATAGGATTCCGTGTCGGGATTGTGACGAAGTGTTGCCGAACAAAACAGCTTTGTACAAGCATCGTAAGAAGGAACACAGCGATGGAACTACACGCTCTTATACTAAACCAGGCATGTACCCGAACGCCGAGTCAGAGTCTACAAGCGGAGCGTGTCCTCACTGCCCCGCTACCTTCACGCATACCACCGACCTGCACAAACACGTCAAAGATATCCACGGCAAAGACGACGACTCCTGCGCATCTTGCAACAAAACATCCACCTCGGACGCGTCGTGTACGCGCCGCCCGCACGTGTGCCCCGTATGCGGGCACGCCTTCCGCACGCTGTCCATGCGCAATGAACACTTGCGCGTCCACACCGGCGAGCGACCCTTCCCGTGCGACGTGTGCGGAGTGGCCTTCAGAAGGTCAGAGTGTGCGACGTGTGCGGGGAGTGGCCTTCAGAAGGTGAGTGCGGCGTGGAGCTCAGCAGTCGTCCATGATAGAGCAGGTCAGAGTGTGCGACGTGTGCGGAGTGGCCTTCAGAAGGTGAGTGAGGAGTGCAGCTCAGTAGTCGTCAATGATAGAGCAGGTCAGAGTGTGCGACGTGTGCGGAGTGGCCTTCAGAAGGTGAGTGCGGCGTGGAGCTCAGCAGTCGTCAATGTTAGAGCAGGTCAGAGTGTGCGACGTGTGCGGAGTGGCCTTCAGAAGGTGAGTGCGGCGTGGAGCTCAGCAGTCGTCAATGTTAGAGCAGGTCAGAGTGTGCGACGTGTGCGGAGTGGCCTTCAGGAGGTGAGTGCGGCGTGGAGCTCAGCAGTCGTCCATGATAGAGCAGGTCAGAGTGTGCGACGTGTGCGGAGTGGCCTTCAGAAGGTGAGTGCGGCGTGGAGCTCAGCAGTCGTCCATGATAGAGCAGGTCAGAGTGTGCGACGTGTGCGGGGAGTGGCCTTCAGAAGGTGA
Protein Sequence: MTEPQPPLILCMESATGEEVSLRVEPDDNFQMFLDKAKSLLGYEVDINSITRNQPVSLSENVYQFLVNAEQNLQADDLTQNFDQMLDTNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYADDVTDIDFDDTSIQETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTIKTYATLNPVTARNKSPKSLIKDNFKNYDDSYQRSDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKTWSKPLSYVDIDGVLIGESESQICFICGKNVDNNVDKLYLFDNEDQRLYRCSPQKKMSTQLKIICECCLNENFTPCRMKSANQFLNPDEYLVIRNNQQYIFQKVKNFNFAHLSKAKDMINKIEKRIDKEEFVKVEIGSDGEIITKPIDKRSDDIVIVKDEKREGSSSDVEIVEPEPEIDHIIDNLEEADEEVKEFLGKYQRDDSEVTELKCRFCEQVFPDLAAVTDHCETHKHDLEDGEVFPCPLCNYGYANLKYLKAHVKAAHERRESSKILKEENESNKEENRGEDGTPTKASSPIAKRTRSSSKKGDCDGKDSEKSSEELKADSNTEATEPPIIKTEVKQECLDSSEDEIWIVQTADAEATQELQKLLCSAKVKEGGQDGASEKTPKCYNCSQIFANADGLSNHRCRRRTRKRKSKDLGNLICIPTEEDFLKRAQGRPRPADSSVDNDFLVMRPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHETSNKARTDGRYSCSECDDATFCTETELFDHVHFQHDKQKRWQCPVEDCGKTFFLRATLTKHSRTHTDTRRYVCVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCTRAFRDHLHAQEELAPRLERVCAVCTRAFRDHLLAQEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIVESPKLSKPIKRQVSNETGEPLLAQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADAKKQADGQPQANADSSARSAAGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWSLAYHRKKVHGKNGADDPGVATNKTNREDYRIPCRDCDEVLPNKTALYKHRKKEHSDGTTRSYTKPGMYPNAESESTSGACPHCPATFTHTTDLHKHVKDIHGKDDDSCASCNKTSTSDASCTRRPHVCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSECATCAGSGLQKVSAAWSSAVVHDRAGQSVRRVRSGLQKVSEECSSVVVNDRAGQSVRRVRSGLQKVSAAWSSAVVNVRAGQSVRRVRSGLQKVSAAWSSAVVNVRAGQSVRRVRSGLQEVSAAWSSAVVHDRAGQSVRRVRSGLQKVSAAWSSAVVHDRAGQSVRRVRGVAFRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121732;
90% Identity: iTF_00952109;
80% Identity: -