Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: -
Assembly: GCA_932526535.1
Location: OW052114.1:2371265-2415482[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.6 2.3e+02 2.8 1.4 2 23 492 513 491 513 0.89

2 18 0.0019 0.12 13.1 0.0 1 23 523 546 523 546 0.96

3 18 0.097 6.2 7.7 0.6 2 21 672 691 672 692 0.94

4 18 0.039 2.5 8.9 3.8 2 23 755 776 754 776 0.95

5 18 0.85 54 4.7 0.7 1 23 788 812 788 812 0.91

6 18 0.00014 0.0092 16.6 0.3 2 23 819 842 818 842 0.97

7 18 0.16 10 7.0 0.3 1 23 848 870 848 870 0.93

8 18 0.0037 0.24 12.2 2.9 1 23 876 898 876 898 0.98

9 18 0.58 37 5.3 0.5 2 20 909 927 909 929 0.90

10 18 0.034 2.2 9.2 0.2 1 23 1008 1030 1008 1030 0.97

11 18 2.3 1.4e+02 3.4 7.2 1 23 1037 1059 1037 1059 0.95

12 18 0.0015 0.097 13.4 1.8 1 23 1103 1126 1103 1126 0.95

13 18 0.00025 0.016 15.8 0.7 1 23 1133 1156 1133 1156 0.98

14 18 0.0042 0.27 12.0 0.2 2 23 1178 1200 1177 1200 0.96

15 18 0.014 0.89 10.4 4.6 3 23 1226 1247 1225 1247 0.95

16 18 0.00033 0.021 15.5 1.2 1 23 1272 1294 1272 1294 0.96

17 18 0.00013 0.0085 16.7 0.1 1 23 1300 1322 1300 1322 0.97

18 18 0.00042 0.027 15.1 0.7 3 23 1330 1351 1328 1351 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.6	2.3e+02	2.8	1.4	2	23	492	513	491	513	0.89
2	18	0.0019	0.12	13.1	0.0	1	23	523	546	523	546	0.96
3	18	0.097	6.2	7.7	0.6	2	21	672	691	672	692	0.94
4	18	0.039	2.5	8.9	3.8	2	23	755	776	754	776	0.95
5	18	0.85	54	4.7	0.7	1	23	788	812	788	812	0.91
6	18	0.00014	0.0092	16.6	0.3	2	23	819	842	818	842	0.97
7	18	0.16	10	7.0	0.3	1	23	848	870	848	870	0.93
8	18	0.0037	0.24	12.2	2.9	1	23	876	898	876	898	0.98
9	18	0.58	37	5.3	0.5	2	20	909	927	909	929	0.90
10	18	0.034	2.2	9.2	0.2	1	23	1008	1030	1008	1030	0.97
11	18	2.3	1.4e+02	3.4	7.2	1	23	1037	1059	1037	1059	0.95
12	18	0.0015	0.097	13.4	1.8	1	23	1103	1126	1103	1126	0.95
13	18	0.00025	0.016	15.8	0.7	1	23	1133	1156	1133	1156	0.98
14	18	0.0042	0.27	12.0	0.2	2	23	1178	1200	1177	1200	0.96
15	18	0.014	0.89	10.4	4.6	3	23	1226	1247	1225	1247	0.95
16	18	0.00033	0.021	15.5	1.2	1	23	1272	1294	1272	1294	0.96
17	18	0.00013	0.0085	16.7	0.1	1	23	1300	1322	1300	1322	0.97
18	18	0.00042	0.027	15.1	0.7	3	23	1330	1351	1328	1351	0.95

Sequence Information

Coding Sequence: ATGACGGAGACACAGCCACCACTGATCCTGTGCATGGAGAACGCGACGGGTGAGGATGTGGCTCTCAGGATAGAACCCGATGATAACTTCCAGATGTTTCTCGACAAGGCTAGATCAATTCTCGGCTTTGACGTGGACCTAAACTCGATAACCAGAAACCAACCAGTCTCGCTATCAGAAAACGTTTACCAGTTCCTAATTAACGCCGAACAAAACCTCCAAGCGGACGAGCTAACACAAAACTTTGACCAAATGTTGGACACCAACGATGGGGCCAACGACTTGGTCTACATATTGGACGATGGAACCCAAATCCGGGCTTCACAAATCCACTTTGACAATGATGATCCTTTGGTTGATCTGACAGCTGAGAAAATACCTTTCGTTAAATACGCTGATGATGTCAATGATGTTGATTTAGATGATGTTAATGTACAAGAGACTAAAAAGATTAATATCGTTGAAAGTCCCGTGTCCAGGTGGTCTAGTAAAAATTCTAGTCCAAAATGCAGCTTTGTCAATACTCTGCCCTTCAAACTAGTATGCAACAACACTTCTGGTTTCGAAGCCCAATTCACGAAGTACCTAGAAGCTAACACAATGAAAACGTACGCGACTTTGAACCCTGTTACTACACGAAATAAGTCTCCAAAAAGCTTGATTAAAGACAATTTTAAAAACTACGATGACAGCTACCAGGGGAATGACAACTTGTCCTACACTCGTGAGGAGATTCTGAACATGTTTAAGGACTCGCCGATGACGTCATTGCCTTATGACCAGGGTTACAGCGAAAGGAGACATGTCCGAAAGACGGATCCGACAAGACTTGTTCATAAAAACTGGAGTAAGCCTCTATCCTACGTCGATATAGACAGAGTATTAATAGGAGAAAGTGAGAGCCAAATATGTTTTATCTGTGGCAAACATGTCGATAATAATGTAGATAAATTATACCTCTTCGACAATGAAGACCAGAGACTACACAGGTGTTCGCCGCAAAAGAAAATGTCGACGCAACTGAAAATTATCTGCGAATGTTGTCTGAACGAGAATTTTACGCCATGTCGCATGAAGAGTGCCCATCAATTTCTAAATCCTGACGAATTTCTCGTGATAAGAAATAACCAACAATACATCTTTCAGAAAGTCAAAAACTTCAGTTTTAACCATCTGTGTAAAGTCAAAGATATCATAAACAAGACAGAGAAAAAGATAGACAAAGAAGAGTTTGTTAAAGTCGAAATTGGTTCTGATGGTGAAATTATTACCAAACCCATAGACAATGATCCACGGTCTGATGACGTCATTATAGTGAAGGACGAGAAGAATGAGGGTAGTTCGAGTGACGTAGAGATTGTAGAGCCGGAACCGGAAATTGATCATATCATAGACAATTTGGAGGAGGCTGATGAGGAGGTGAAAGAGTTTTTGGGGAAATATCAATGTGATAATAGTGACGTCACTGAATTAAAATGCAGGTTCTGTGAGCAGATCTTCTCAGATCTGCAGGCGGTGACGGATCATTGTGAGACACATAAACACGACCTGGAGGACGGCGAGGTGTTCCCGTGTCCTCTCTGCAATTATGGTTATGCAAATTTGAAATGGCTGAAAGGTCATATGAAGGCGGCACACGAGAAGACTGAAACTGAAAAAGTTATGAAAGAAGAAACTGAAACGATGAAAGAGGAAAATAAAGATGACGATGGCAAATCGCCTAAAGCCTCCTCGCCCATTGCCACTCGTACTAGAAGTTCTAGCAATAAAAAAGGAGAAGGCGATAGAAAAGAGGACGACGCACCGGAAGATATTAAATCGGACTGTAATACCGAGGCGACGGAGCCACCCATCATAAAAACGGAGGTAAAGCAAGAATGCCTGGACAGCAGTGAGGATGAGATCTGGATTGTGCAGACAGCTGATGCTGAAGCCACACAGGAGCTGCAGAAGCTACTCTGTAGCACCAAGGCTAATGAAGACAGGCCGGATGGCGATTCAGATAAGACGCCAAAATGTTTTAATTGCAGTCAAATATTCGCGAACGCGGATGCTCTGGCAAGCCATCGCTGTAGAAGACGCAATCCTAAGCGGAAGTCCAAAGACCTGGTCAACCTGATATGTATACCTACTGAGGAAGACTTTTTGAAAAGAGCGCAGGGACGCCCGCGACCTGCCGACACAACAATAGACAATGATCTTCTTGTTATGCGCCCTCGAAAACGCCGCAACCGAGAACCGACTTCAAACCCTCAGATAGTGACCTGCCACAATTGCAACGAATCTTTTACATCTAAAGTTAGACTCAAGTTTCACATGCAATTCCACGAAACATCAAACCTAGCGCGATCAGACGGTCGCTACTCCTGCTCGGAGTGCGACGACGCGACCTTCGCCACGGAGACAGAACTCTTCGACCACGTCCACTTCCAGCACGACAAGCAGAAGAGGTGGCAGTGCCCTGTGGAGGGCTGCGGGAAGACGTTCTTCCTTAGGGCAACCCTAACAAAGCACAGTCGCACGCACACAGACACACGACGGTACGTGTGCGTGACCTGTGATAAGCGATTCCTAGACAAACAGACGCTGGATGAACATGGAGTCACGCACTTACAGATCAAGCCGTTCCAGTGCCACATCTGCCTGAAGCAGCTGACGCGTCGCTCGCGGCTGCGCATGCACGTGCGCGCGCACGAGGAGGAGCTGGCGCCGCGTCTCGTGCGCGTCTGTGCCGTCTGCACGAGGGCCTTCCGCGACCACCGGCATGCACAGGAACACGCGTCCAAATCGACGGAGTGCATCGAAGCGTTCGCCAACGAGCTGAAGGAGGAAGCTGAGGAGGTGTCCGTCCAGCTGTCTCCCACCAGCGGACTCGTGAGGCACACTGTACAGATTGTGGAATCGCCGAAGCTATCCAAGCCGATCAAGCGGCAGGTGTCGAGTGAAATAGGTGAGCCGCTGCTGACCCAGTTGGCTGACGAGGCGAGGGCGCTCATACGAGTCGTCGAGATCGAGAAGGCGTTCAGATGCGAGTATTGTGAAGACGTGTTCTACTTGGAGAGCGGTCTGAACAACCACCGCGCGATACACAAGGGCGTGAAGAACCCCTTCACCTGCCACATCTGTAAAGTTAGCTTTGCTACCTACTCCAGATGCACAACACATAAAACGACACACGGCTTCTACAAGCGCTCGCTGGCGGACGCTAAGAAGCACGCCGACGCGCCGGCACAAGCCGACGCCGACGCCGCCGCGCCCTCCGCCACCGGCATACTCGGATACGGGGACTTTCCTGTCGTAAAGCACTTCCTGTGCGAGGACTGCGGTCGCTCCTACCTGCACTGGACCTACCTTCAAGTACACAGACGCATGAAACACGCGAACGACAACTTTCTGTACAAGTGCAACCAGTGTGAACTTACCTTTCCTAACAGCTGGAGCTTGGCTTATCACCGTAAGAAGGTGCACGGCAAGTCCGGAGCTGATGAGCCTGGGACCACTAACAAGAGCAACAGGGAAGACTACAGGATACCGTGTCGAGATTGTGACGAGGTGTTGCCGAACAAAACAGCGTTATACAAACATCGTAAGAAAGAGCATAGCGATGTCACCACACGGGCCTAttctaaaccagGCATGTACGCTAGTGCAGAGTCGGAGTCTACGGGCGGTGCGTGTGCGCATTGTCACGCTACGTTCACACACGCTGAGGACTTACACAAACATGTCAAAGAAGTCCACGGCAAGGACGAGGTGTCCTGCTTATCCTGCAACAAGACGTCAAGCTCGGACGCGTCGTGTCCGCGCCGGCCGCACGCCTGTCCGGTGTGTGGACACGCCTTCCGGACGCTGTCCATGAGGAACGAGCATCTGAGGGTGCACACTGGGGAGAGGCCCTTCCCCTGTGATGTCTGCGGAGTAGCCTTTAGGAGGTCCACCGCCATGCGGAACCACCGCCTCATCCACACGGGCGTGCGGGCGTGGGCGTGCGGGCGCTGCCCCAAGCGCTTCCGCATCCGCTCCGACCTCCGCACGCATCTGCGGCTCAAGCATCCCGCTACTATTGTTGTTGTGGAGATGTTAGGTCTAAACCCGACCCCGGAGGAAGTATTGAACGTGCTCGCGTCGCAGAACGTACCACACGACAAGCTTATTGAAATCACCAAGATGTCCTTCACTAAGGGCTCGACGAGCGTGATCCCGACCTGCGCACGCGCACTGTCGGCGCTCAACAACGTGCCGCGCACGCACGTCGCCTGCATCAAGCCCACGCCCTCCCGGATGTTAGACGAGTTCCAGCCAGCGCGTCGCGGTCGCGGCATCGCCAAGAACCCTCGCAGACCGAAGATCCTGCAGCGAGGAGACTCGGAGACGCAGGAGGACAACACCTACCCTAGCGGAGAGGAGCTGTCAGATCTGAACATGCAACTGTTGCTGCGAGACGGCGTGCTGGTGAACGGCAGTCAGATGGTGCAGCTGCAGCTCGACGACCACATACTGATGGAGTAG
Protein Sequence: MTETQPPLILCMENATGEDVALRIEPDDNFQMFLDKARSILGFDVDLNSITRNQPVSLSENVYQFLINAEQNLQADELTQNFDQMLDTNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYADDVNDVDLDDVNVQETKKINIVESPVSRWSSKNSSPKCSFVNTLPFKLVCNNTSGFEAQFTKYLEANTMKTYATLNPVTTRNKSPKSLIKDNFKNYDDSYQGNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPTRLVHKNWSKPLSYVDIDRVLIGESESQICFICGKHVDNNVDKLYLFDNEDQRLHRCSPQKKMSTQLKIICECCLNENFTPCRMKSAHQFLNPDEFLVIRNNQQYIFQKVKNFSFNHLCKVKDIINKTEKKIDKEEFVKVEIGSDGEIITKPIDNDPRSDDVIIVKDEKNEGSSSDVEIVEPEPEIDHIIDNLEEADEEVKEFLGKYQCDNSDVTELKCRFCEQIFSDLQAVTDHCETHKHDLEDGEVFPCPLCNYGYANLKWLKGHMKAAHEKTETEKVMKEETETMKEENKDDDGKSPKASSPIATRTRSSSNKKGEGDRKEDDAPEDIKSDCNTEATEPPIIKTEVKQECLDSSEDEIWIVQTADAEATQELQKLLCSTKANEDRPDGDSDKTPKCFNCSQIFANADALASHRCRRRNPKRKSKDLVNLICIPTEEDFLKRAQGRPRPADTTIDNDLLVMRPRKRRNREPTSNPQIVTCHNCNESFTSKVRLKFHMQFHETSNLARSDGRYSCSECDDATFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCDKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCTRAFRDHRHAQEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIVESPKLSKPIKRQVSSEIGEPLLTQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNNHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKHADAPAQADADAAAPSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANDNFLYKCNQCELTFPNSWSLAYHRKKVHGKSGADEPGTTNKSNREDYRIPCRDCDEVLPNKTALYKHRKKEHSDVTTRAYSKPGMYASAESESTGGACAHCHATFTHAEDLHKHVKEVHGKDEVSCLSCNKTSSSDASCPRRPHACPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEMLGLNPTPEEVLNVLASQNVPHDKLIEITKMSFTKGSTSVIPTCARALSALNNVPRTHVACIKPTPSRMLDEFQPARRGRGIAKNPRRPKILQRGDSETQEDNTYPSGEELSDLNMQLLLRDGVLVNGSQMVQLQLDDHILME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121732;
90% Identity: iTF_00810381; iTF_00809460;
80% Identity: -