Basic Information

Insect: Polymixis flavicincta
Gene Symbol: -
Assembly: GCA_949987655.1
Location: OX465198.1:11200811-11254111[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.3 2.8e+02 3.7 0.9 2 23 490 511 489 511 0.90

2 18 0.0024 0.31 13.0 0.0 1 23 521 544 521 544 0.95

3 18 0.17 21 7.2 0.9 2 21 673 692 673 693 0.94

4 18 0.047 5.9 8.9 3.8 2 23 753 774 752 774 0.95

5 18 1 1.3e+02 4.7 0.7 1 23 786 810 786 810 0.91

6 18 0.00017 0.022 16.6 0.3 2 23 817 840 816 840 0.97

7 18 0.29 36 6.5 0.4 1 23 846 868 846 868 0.93

8 18 0.0045 0.56 12.2 2.9 1 23 874 896 874 896 0.98

9 18 0.69 87 5.3 0.5 2 20 907 925 907 927 0.90

10 18 0.058 7.3 8.7 0.4 1 23 1006 1028 1006 1028 0.97

11 18 2.7 3.4e+02 3.4 7.2 1 23 1035 1057 1035 1057 0.95

12 18 0.0018 0.23 13.4 1.8 1 23 1101 1124 1101 1124 0.95

13 18 0.00065 0.082 14.8 0.5 1 23 1131 1154 1131 1154 0.98

14 18 0.005 0.64 12.0 0.2 2 23 1175 1197 1174 1197 0.96

15 18 0.03 3.8 9.5 5.2 3 23 1223 1244 1222 1244 0.95

16 18 0.0004 0.05 15.5 1.2 1 23 1269 1291 1269 1291 0.96

17 18 0.00016 0.02 16.7 0.1 1 23 1297 1319 1297 1319 0.97

18 18 0.00051 0.064 15.1 0.7 3 23 1327 1348 1325 1348 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.3	2.8e+02	3.7	0.9	2	23	490	511	489	511	0.90
2	18	0.0024	0.31	13.0	0.0	1	23	521	544	521	544	0.95
3	18	0.17	21	7.2	0.9	2	21	673	692	673	693	0.94
4	18	0.047	5.9	8.9	3.8	2	23	753	774	752	774	0.95
5	18	1	1.3e+02	4.7	0.7	1	23	786	810	786	810	0.91
6	18	0.00017	0.022	16.6	0.3	2	23	817	840	816	840	0.97
7	18	0.29	36	6.5	0.4	1	23	846	868	846	868	0.93
8	18	0.0045	0.56	12.2	2.9	1	23	874	896	874	896	0.98
9	18	0.69	87	5.3	0.5	2	20	907	925	907	927	0.90
10	18	0.058	7.3	8.7	0.4	1	23	1006	1028	1006	1028	0.97
11	18	2.7	3.4e+02	3.4	7.2	1	23	1035	1057	1035	1057	0.95
12	18	0.0018	0.23	13.4	1.8	1	23	1101	1124	1101	1124	0.95
13	18	0.00065	0.082	14.8	0.5	1	23	1131	1154	1131	1154	0.98
14	18	0.005	0.64	12.0	0.2	2	23	1175	1197	1174	1197	0.96
15	18	0.03	3.8	9.5	5.2	3	23	1223	1244	1222	1244	0.95
16	18	0.0004	0.05	15.5	1.2	1	23	1269	1291	1269	1291	0.96
17	18	0.00016	0.02	16.7	0.1	1	23	1297	1319	1297	1319	0.97
18	18	0.00051	0.064	15.1	0.7	3	23	1327	1348	1325	1348	0.95

Sequence Information

Coding Sequence: ATGACGGAGCCACAACCACCATTGATCCTTTGCATGGAGAATGCGTCGGGTGAGGATGTGGCGCTTCGAATAGAACCCGGTGATAACTTCCAGATGTTTCTTGATAAGGCCAAATCACTCCTAGGCTTCGATGTAGACATAAACTCAATAACCAGGAACCAGCCCGTTTCACTATCAGAAAACATCTACCAATTCCTAGTAAACGCTGAACAAAACTTACAAGCAGACGAACTAACGCAAAACTTTGACCAAATGTTGGACACCAACGATGGAGCCAATGACTTGGTCTACATATTGGACGATGGGACCCAAATCCGTGCCTCGCAGATACACTTCGACAATGATGATCCTTTAGTTGATTTGACAGCTGagaaaataccttttgttaaatACGCTGATGACGTCACTGATGTAGATGTTGATGCCATTCATATTcaagaaacaaagaaaataaatatcgtTGAAAGTCCTGTGTCGAGATGGTCTAGTAAAAACTCTAGCCCAAAATGCAGCTTCGTTAATTCTCTACCGTTCAAATTAGTCTGCAATAATACTTCGGGCTTTGAAGCCCAATTCACTAAATATTTAGAAGCGAATACATCAAAAACGTACGCGACCCTAAACCCTGTGACATCTCGAAATAAATCCCCAAAAAGTTTGATaaaagataattttaagaactaCGACGATAGCTATCAGAGGAATGATAATTTATCCTACACCCGGGAGGAGATTTTGAACATGTTCAAAGACTCCCCGATGACGTCTCTGCCATATGACCAGGGTTATAGTGAGCGGAGACATGTTAGGAAGACGGATCCTTCGAGACTTGTTCATAAGAATTGGAGTAAGCCTCTTTCTTACGTCGATATTGACGGGGTATTGATTGGAGAAAGCGAGAGCCAAGTATGTTTTATTTGCGGCAAACATGTGGACAACAACGTTGATAAATTGTACCTCTTTGATAACGAAGACCAGAGGTTGTACAGGTGTTCTCCGCAAAAGAAAATGTCGACTCAGCTAAAAATTATCTGCGAGTGTTGTTTAAACGAAAACTTCACACCATGCAGAATGAAAAGCGCAAATCAATTCTTAAATCCTGATGAATATCTCGTCATAAGGAACAATCAGCAATACATCTTCCAGAAAGTTAAAAACTTCAATTTCGCGCACCTAGGTAAAGCTAAAGagattataaacaaaatagaGAAGAAAATAGACAAAGAAGAGTTTGTCAAAGTCGAAATTGGCTCCGATGGAGAAATAATTACCAAGCCAATTGACACTAGGTCTGATGACATCATTATTGTTAAAGATGAGAAGAAGGAGAGTAGCTCGAGTGACGTAGAAATTGTAGAGCCGGAACCAGAGATAGATAATATCATAGACAATTTGGAGGAAGCTGATGAGGAGGTGAAAGAGTTTTTGGGGAAATATCAACGTGATGATAGTGAAGTTACCGAGTTGAAATGCAGATTCTGTGAGCAAATATTCTCGGATCTGGCGGCGGTGACGGATCACTGTGAAACGCATAAACATGACCTAGAAGATGGAGACGTCTTTCCCTGTCCACTCTGCAACTATGGTTATGCAAATTTAAAATGGCTGAAAGCCCATGTGAAGGCGGCCCACGAAAAGAGTGAAACGCCAAAAGAGTTAAGAGAAGAAAGTGAACCTGTGAAAGCGGAGATTAAAGATGACCAAGGAAAAAACACTTCATCATCTGCTAAAGCATCATCACCCATTGCAAAACGTACTAGAAGCTCTAATAGACAGGGAGATGGCGATAGAACAGAGGATGAAAAGTCCGAAGAAGTTAAGGCCGATTCTAATACTGAAGCGACGGAGCCACCCATCATAAAAACAGAGGTAAAGCAAGAATGCGTGGACAGCAGTGAGGATGAGATCTGGATCGTTCAGACTGCAGATGCAGAAGCCACACAGGAGTTGCAGAAACTACTGTGTAGTGCCAAGgttaaaGGTGATGGGCTGCATGGCGACTCTGAAAAGACGCCTAAGTGTTTTAACTGCGGTCAATTGTTCGCAAACGCAGATGGCCTGTCAAGCCATCGCTGTAGAAGGAACCGGAAGCGGAAGTCCAAGGACAACCTTATATGTATACCTACCGAGGAAGACTTCTTGAAGAGAGCTCAGGGACGTCCACGACCAGCTGATACGTCAGTAGACAATAATCTACTTACTATGCGTCCCAAAAAACGCCGCAGCCGAGAACCGACCTGCAACCCTCAGGTGGTGACCTGCCACAATTGCAACGAATCCTTCACGTCCAAAGTTAGACTCAAGTTTCATATGCAGTTCCACGAGACATCAAACCATGCCAGATCAGACGGCCGCTACTCCTGCTCGGAGTGTGACGACGCTACCTTCGCCACGGAGACGGAGCTCTTCGACCACGTGCACTTCCAGCATGACAAGCAGAAGAGGTGGCAGTGTCCCGTCGAGGGCTGCGGGAAGACTTTCTTCCTCAGGGCAACCCTTACAAAACACAGTCGCACGCACACAGACACGCGAAGATACGTGTGCGTCACATGTAACAAGCGGTTTTTGGACAAACAGACTTTAGATGAACATGGCGTCACACATTTACagATAAAACCCTTCCAATGCCACATATGCCTGAAGCAGTTAACACGTCGCTCTCGCTTGCGCATGCACGTGCGCGCGCACGAGGAGGAGTTGTCGCCGAGGCTTGTGCGCGTCTGTGCGGTGTGCACGAGGGCCTTTAGAGATCATCGGCATGCACAGGAGCACGCATCAAAATCGGCAGAATGTATCGAAGCTTTTGCGAACGAATTAAAAGAAGAGGCGGAAGAGGTGTCAGTACAGTTGTCGCCTACCAGTGGACTTGTGAGACATACTGTGCAGATAGTTGAATCTCCGAAGCTCTCAAAGCCGATCAAACGCCAAGTGTCAAACGAAGTGGGCGAGCCACTGCTGACTCAGCTAGCTGATGAAGCGCGCGCTTTGATAAGGGTGGTCGAGATTGAGAAGGCGTTCCGCTGCGAGTATTGTGAAGACGTGTTTTACTTGGAAAGCGGTCTGAACACACACCGCACGATACACAAGGGAGTGAAAAACCCCTTCACTTGCCACATCTGTAAAGTTAGCTTCGCTACTTATTCCAGATGCACAACCCACAAAACAACCCATGGCTTCTACAAACGCTCGCTAGCCGACGCCAAGAAACAGGCCGAGGGTCCCGTACAAGCCGACGCCGACTCCTCCGCACGCTCTGCCACCGGCATACTGGGATACGGCGACTTCCCTGTCGTCAAACACTTCCTGTGCGAgGACTGTGGCCGCTCGTACCTGCACTGGACGTACCTACAAGTACACAGACGCATGAAGCACGCCAACGAGAACTTTCTATACAAATGTAATCAGTGCGAACTTACTTTTCCGAACAGCTGGGGCCTGGCGTATCATCGTAAGAAGGTGCACGGCAAGACTGCTGACGACCCTGGAACCAGCAACAAGACCAGCAGGGATGATTATAGGATACCTTGTCGGGATTGTGACGAGGTGCTGCCGAACAAGACAGCTTTATACAAGCATCGCAAGAAGGAACACAGCGATCTAACTACACGAGCTTATAGTAAACCAGGTATGTATGCGAGCGCAGAGGCAGAATCTACGGGCGGGGCGTGTTCCCATTGTCACGCCACATTCACGCACGCGATTGATCTGCACAAACATGTCAAAGAAGTTCACGGCAAAGACGACGAGTCGTGCCTATCCTGCAACAAGACGTCGACCACAGAAGGGACATGTCCGCGCCGTCCGCACGCGTGTCCGGTCTGTGGACACGCCTTCCGGACACTTTCTATGCGGAATGAGCATCTGAGGGTACATACTGGCGAGAGACCTTTTCCGTGTGATGTGTGCGGAGTCGCTTTTAGGAGGTCCACAGCGATGCGCAACCACCGCCTGATCCACACGGGCGTGCGCGCGTGGGCGTGCGGGCGCTGCCCCAAGCGGTTCCGCATCCGGTCCGACCTGCGCACGCATCTGCGGCTCAAGCATCCCGCCACCATCgtcgttgtggagATGGAAGGCTTAAACCCGTCGTCTGAGGAAGTACTGTTGGCGCTCGCTGCACAAAACGTTCCACACGACAAGCTCATAGATATTACCAAGATGTCCTTCCCTAAGGGATCGACGAGCGTGATCCCAACATGCGCGCGCGCACTGGCCGCGCTGAACAACGTGCCGCGCACGCACGTCGCATGCATCAAGCCCACGCCCgcgtgtatgtTGGAAGACTTCCAACCGGCCCGTCGAGGTCGCGGCATCGCCAAGAACCCGCGACGACCCAAGATACTGCAGCGAGGGGACGCGGAGCCGCATGACAACACTGCCTACCCCATGGTTGGTGGAGAGgaACTGTCAGATCTGAACGTGCAACTCCTACTGAGGGATGGCGTGCTTGTCAATGGCAGCCAGATGGTTCAGCTACAGTTGGATGACCCTTTATTGATGGAGTAA
Protein Sequence: MTEPQPPLILCMENASGEDVALRIEPGDNFQMFLDKAKSLLGFDVDINSITRNQPVSLSENIYQFLVNAEQNLQADELTQNFDQMLDTNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYADDVTDVDVDAIHIQETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTSKTYATLNPVTSRNKSPKSLIKDNFKNYDDSYQRNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKNWSKPLSYVDIDGVLIGESESQVCFICGKHVDNNVDKLYLFDNEDQRLYRCSPQKKMSTQLKIICECCLNENFTPCRMKSANQFLNPDEYLVIRNNQQYIFQKVKNFNFAHLGKAKEIINKIEKKIDKEEFVKVEIGSDGEIITKPIDTRSDDIIIVKDEKKESSSSDVEIVEPEPEIDNIIDNLEEADEEVKEFLGKYQRDDSEVTELKCRFCEQIFSDLAAVTDHCETHKHDLEDGDVFPCPLCNYGYANLKWLKAHVKAAHEKSETPKELREESEPVKAEIKDDQGKNTSSSAKASSPIAKRTRSSNRQGDGDRTEDEKSEEVKADSNTEATEPPIIKTEVKQECVDSSEDEIWIVQTADAEATQELQKLLCSAKVKGDGLHGDSEKTPKCFNCGQLFANADGLSSHRCRRNRKRKSKDNLICIPTEEDFLKRAQGRPRPADTSVDNNLLTMRPKKRRSREPTCNPQVVTCHNCNESFTSKVRLKFHMQFHETSNHARSDGRYSCSECDDATFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELSPRLVRVCAVCTRAFRDHRHAQEHASKSAECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIVESPKLSKPIKRQVSNEVGEPLLTQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRTIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQAEGPVQADADSSARSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWGLAYHRKKVHGKTADDPGTSNKTSRDDYRIPCRDCDEVLPNKTALYKHRKKEHSDLTTRAYSKPGMYASAEAESTGGACSHCHATFTHAIDLHKHVKEVHGKDDESCLSCNKTSTTEGTCPRRPHACPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEMEGLNPSSEEVLLALAAQNVPHDKLIDITKMSFPKGSTSVIPTCARALAALNNVPRTHVACIKPTPACMLEDFQPARRGRGIAKNPRRPKILQRGDAEPHDNTAYPMVGGEELSDLNVQLLLRDGVLVNGSQMVQLQLDDPLLME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121732;
90% Identity: iTF_00907299; iTF_00906430; iTF_00121732; iTF_00173510; iTF_00038088; iTF_00147880; iTF_01094313; iTF_00758603; iTF_01095214; iTF_01093397; iTF_00449519; iTF_00122697; iTF_00124564;
80% Identity: -