Basic Information

Insect: Agrotis ipsilon
Gene Symbol: -
Assembly: GCA_028554685.1
Location: CM052982.1:1189864-1211559[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.5 8.6e+02 1.7 0.3 2 23 488 509 487 509 0.85

2 14 0.00047 0.047 15.1 0.0 1 23 519 542 519 542 0.95

3 14 0.033 3.4 9.3 1.2 2 21 667 686 667 687 0.94

4 14 0.034 3.4 9.3 3.8 2 23 750 771 749 771 0.95

5 14 0.73 73 5.1 0.7 1 23 783 807 783 807 0.91

6 14 0.00012 0.012 16.9 0.3 2 23 814 837 813 837 0.97

7 14 3.2 3.2e+02 3.0 0.3 1 23 843 865 843 865 0.90

8 14 0.0032 0.32 12.5 2.9 1 23 871 893 871 893 0.98

9 14 0.8 81 4.9 1.8 2 19 904 921 903 924 0.90

10 14 0.042 4.2 9.0 0.2 1 23 1003 1025 1003 1025 0.97

11 14 1.9 2e+02 3.7 7.2 1 23 1032 1054 1032 1054 0.95

12 14 0.0013 0.13 13.7 1.8 1 23 1096 1119 1096 1119 0.95

13 14 0.0022 0.22 13.0 0.9 1 23 1126 1149 1126 1149 0.97

14 14 0.087 8.8 8.0 0.3 2 23 1171 1193 1170 1193 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.5	8.6e+02	1.7	0.3	2	23	488	509	487	509	0.85
2	14	0.00047	0.047	15.1	0.0	1	23	519	542	519	542	0.95
3	14	0.033	3.4	9.3	1.2	2	21	667	686	667	687	0.94
4	14	0.034	3.4	9.3	3.8	2	23	750	771	749	771	0.95
5	14	0.73	73	5.1	0.7	1	23	783	807	783	807	0.91
6	14	0.00012	0.012	16.9	0.3	2	23	814	837	813	837	0.97
7	14	3.2	3.2e+02	3.0	0.3	1	23	843	865	843	865	0.90
8	14	0.0032	0.32	12.5	2.9	1	23	871	893	871	893	0.98
9	14	0.8	81	4.9	1.8	2	19	904	921	903	924	0.90
10	14	0.042	4.2	9.0	0.2	1	23	1003	1025	1003	1025	0.97
11	14	1.9	2e+02	3.7	7.2	1	23	1032	1054	1032	1054	0.95
12	14	0.0013	0.13	13.7	1.8	1	23	1096	1119	1096	1119	0.95
13	14	0.0022	0.22	13.0	0.9	1	23	1126	1149	1126	1149	0.97
14	14	0.087	8.8	8.0	0.3	2	23	1171	1193	1170	1193	0.95

Sequence Information

Coding Sequence: ATGACGGAAACGCAAGCACCTTTGATCCTATGCATGGAGAACGCGACCGGCGAAGAGGTGGCGCTCAGAATAGAACCTGATGATAACTTCCAGATGTTTCTGGATAAGTCCAGAACCCTTCTAGGCTACGACGTAGACATAAACTCGATTACCAGAAACCAACCGGTCTCACTATCAGAGAACGTTTGCCAATTCCTAATCAACGCCGAACAAAATCTGCAAGCAGACGACCTAACTCACAACTTTGATCAAATGTTGGACACCAACGACGGAGCCAACGATTTGGTCTACATCTTGGACGATGGCACACAAATACGAGCTTCTCAAATAcattttgataatgatgatccATTGGTAGACCTTACAGCAGAAACAATACCGTTTGTCAAATATGCAGATGACATAACAGATGTATATTTTGATAACGTTCAAGTCCAAGAAACTAAAAAGATCAATATTTGTGAAAGCCCCGTGTCTAGATGGTCCAGCAAAAATTCTAGTCCAAAATGCAGTTTTGTCAATTCCTTACCATTCAAATTGGTATGCAATAACACGTCCGGTTTCGAAGCTCAATTCACGAAATATTTGGAAgctaataatactaaaacttaCGCGACTTTGAACCCAGTTACTACGAGGAATAAGTCTCCAAAGAGTTTGATTAAAGATAACTTTAAGAACTATGACGATAATTATCAAAGGAATGATAACTTTTCGTATACTCGAGAGGAGATATTGAACATGTTTAAAGACTCACCGATGACATCTTTGCCTTATGACCAGGGTTACAGCGAAAGGAGACATGTACGGAAAACTGACCCTTCGCGAATTGTGCAGAAGAACTGGAGCAAACCACTTTCCTATGTCGATATGGATGGAGTTTTAATCGGTGAAAGTGAGAGccaaatctgttttatttgcgGCAAACATGTAGATAATAACGTAGACAAACTGTACCTTTTTGACAATGAAGATCAGAGGTTGCATAGATGTTCACCGCAGAAGAAAATGTCTACGCAGTTGAAAATTATCTGCGAGTGCTGTCTTAACGAAAATTTCGCGCCAAGCAGGATGAAAAGCGCGAACCAATTCCTAAATCCTGATGAATTCCTGGTCATACGAAATAATCAGCAGTACATCTTCCAGAAGgtgaaaaactttaattttacgCATTTGAGCAAACCCATAGAGACCACGAGCAAGATAGAGAAAAAGATAGACAAAGAAGAGTTTGTGAAAGTCGAAATAGGTTCAGATGGAGAAATTATCACGAAACCCTATAGATcttatgacataattattataaaagatgaGAAAAAGGACGGTAGTTCTAGTGATGTAGAGATTATAGAGCCTGAACCAGAGATAGATAATATCATAGACAATTTGGAGGAGGCTGATGAGGAAGTGAAAGAGTTTTTGGGGAAATATCAAGTTGATGATAGTGAGGTTACTGAGTTGAAGTGCAGATTCTGCGAGCAAATCTTCCCGGATCTCGCGGCAGTGGCGGATCACTGTGAGACCCACAAACATGACTTGGAAGATGGCGAAGTATATCCATGTCCACTCTGCAATTAcgGCTATGCAAATTCAAAGTGGCTGAAAGCCCATGTTAAGGCGGCACACGAGAAGACAGAAgcccaaaaaatattgaaagaggAAAATGAGCCTCCGAAAGAGGAGAATAAAgatGGTGAAGAGACGCCTACTAAAGCTTCATCACCTATTGCTAAAAGAACTAGAAGTTCTAGTAAAAGAGATGATGGCGATAAAAAAGTGAATGAAAAGTCAGATGAAATAAAGGCTGAGTCTAACACCGAGAcgAAAGAGCCACCCATCATAAAAACGGAGGTAAAGCAAGAATGTCTGGACAGTAGCGAAGATGAGATCTGGATCGTTCAGACTGGTGATGATGAGGCCACCCAGGAGTTGCAGAAACTACTGTGTAGTGCTAAggtGAAAGGAGAAGACAAAGAAGGGGAATCTGAAAAGACACCCAAATGTAGTAATTGCagTCAAGTATTTGGGAACGCAGAAGATCTGTCAAACCATCGTTGTAGAAGACGGAACAGGAAACGGAAGTCCAAGGATCTGGGCAACCTCATATGTATACCTACTGAGGAAGACTTCTTAAAGAGAGCTCAAGGACGCCCACGACCGCCTGATACATCTGTAGACAATGATCTTCTAGTTATGCTTCCCCGGAAGCGCCGCAACCAGGAATCGACCTCCAACCCAAATGTTGTGACCTGCCACAACTGTAACGAGTCCTTCACGTCCAAAGTTAGACTCAAGTTTCATATGCAGTTCCACGAATCCGCAAAACAAGCTCGAACAGACGGACGCTACTCTTGCTCGGAATGCGATGACGCCACCTTCGCCACGGAGACTGAACTGTTCGACCACGTTCACTTCCAACATGACAAGCAGAAGAGGTGGCAGTGTCCCGTCGAGGGCTGCGGGAAGACCTTCTTCCTGAGGGCAACCCTTACAAAACATAGTCGAACGCACACAGACACGCGTCGCTATGTGTGTATAACGTGTGACAAGCGGTTCTTGGATAAGCAGACTTTAGATGAGCATGGAGTCACGCACTTACAGATCAAACCCTTCCAATGCCACATATGCCTGAAGCAGTTGACGCGTCGCTCGCGCCTGCGCATGCACGTGCGAGCACACGAGGAGGAGCTGGCGCCGCGCCTCGTGTGCGTGTGTGCCGTCTGCACGAGGGCCTTCAGAGATCATCGGCATGCACAGGAACATGCAACAAAGTCAACGGAATGTATCGAAGCGTTCACAAGCGAgttgaaggaggaggcggaggAGGTGTCGGTGCAGTTGTCTCCCACCAGTGGACTTGTGAGACAGGCTGTGCAGATTGTTGAATCTCCAAAACTATCAAAGCCAATAAAGCGTCAGGTGTCAGCGGCCGTAGCGTCTCCCCTCCTCTCACAGTTGGCAGATGAAGCGAGAGCTCTCATTAGAGTCGTTGAAATCGAGAAGGCGTTCCGATGCGAGTACTGCGAAGATGTGTTCTACTTGGAGAGCGGTCTGAACAGTCACCGTGCCATACATAAAGGAGTTAAGAATCCCTTCACCTGCCACATCTGTAAAGTTAGCTTCGCTACTTATTCCAGATGTACTACCCACAAAACAACACACGGTTTCTACAAGCGCTCACTAGCGGAGGCCACGAAACAAGCGGACGGGCGACACACTGAGGCGGACTCTGCCCGCTCCGCTACCGGCATACTGGGATATGGCGACTTCCCTGTAGTCAAACACTTCCTGTGCGAGGACTGCGGTCGTTCATACTTACACTGGACTTACCTACAAGTACATCGTCGTATGAAACACGCCAATGAAAATTTTCTCTACAAATGTAACCAGTGCGACCTTACCTTTCCAAATAGTTGGAGCATGGGGTATCACCGTAAGAAAGTGCACGGGAAGACCGGAGCCGACGAGCCTGGGACTACCAAACAGACCTCCAGGGAGGACTATAGGATACCATGTCGGGATTGCAACGAGTTGTTGCCGAACAAGACAGCGTTGTATAAACATCGGAAGAAGGAACACAGCGACGGATCAACACGAGCATATACTAAAACAGgcttgtctggcggggactatagctCCCTTGCAAATGATGAGACGCCGACCAACTAG
Protein Sequence: MTETQAPLILCMENATGEEVALRIEPDDNFQMFLDKSRTLLGYDVDINSITRNQPVSLSENVCQFLINAEQNLQADDLTHNFDQMLDTNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAETIPFVKYADDITDVYFDNVQVQETKKINICESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANNTKTYATLNPVTTRNKSPKSLIKDNFKNYDDNYQRNDNFSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRIVQKNWSKPLSYVDMDGVLIGESESQICFICGKHVDNNVDKLYLFDNEDQRLHRCSPQKKMSTQLKIICECCLNENFAPSRMKSANQFLNPDEFLVIRNNQQYIFQKVKNFNFTHLSKPIETTSKIEKKIDKEEFVKVEIGSDGEIITKPYRSYDIIIIKDEKKDGSSSDVEIIEPEPEIDNIIDNLEEADEEVKEFLGKYQVDDSEVTELKCRFCEQIFPDLAAVADHCETHKHDLEDGEVYPCPLCNYGYANSKWLKAHVKAAHEKTEAQKILKEENEPPKEENKDGEETPTKASSPIAKRTRSSSKRDDGDKKVNEKSDEIKAESNTETKEPPIIKTEVKQECLDSSEDEIWIVQTGDDEATQELQKLLCSAKVKGEDKEGESEKTPKCSNCSQVFGNAEDLSNHRCRRRNRKRKSKDLGNLICIPTEEDFLKRAQGRPRPPDTSVDNDLLVMLPRKRRNQESTSNPNVVTCHNCNESFTSKVRLKFHMQFHESAKQARTDGRYSCSECDDATFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCITCDKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVCVCAVCTRAFRDHRHAQEHATKSTECIEAFTSELKEEAEEVSVQLSPTSGLVRQAVQIVESPKLSKPIKRQVSAAVASPLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNSHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLAEATKQADGRHTEADSARSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCDLTFPNSWSMGYHRKKVHGKTGADEPGTTKQTSREDYRIPCRDCNELLPNKTALYKHRKKEHSDGSTRAYTKTGLSGGDYSSLANDETPTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121732;
90% Identity: iTF_00712356;
80% Identity: -