Basic Information

Insect: Apamea sordens
Gene Symbol: -
Assembly: GCA_945859755.1
Location: CAMAOQ010000035.1:2490373-2528756[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.1 1.8e+02 3.7 0.9 2 23 490 511 489 511 0.90

2 18 0.017 1.4 10.3 0.0 1 23 521 544 521 544 0.94

3 18 2.1 1.8e+02 3.7 1.0 2 21 640 659 640 660 0.92

4 18 0.045 3.7 9.0 3.8 2 23 721 742 720 742 0.95

5 18 1.1 92 4.6 0.9 1 23 754 778 754 778 0.90

6 18 0.00016 0.014 16.6 0.3 2 23 785 808 784 808 0.97

7 18 0.28 23 6.5 0.4 1 23 814 836 814 836 0.93

8 18 0.0043 0.36 12.2 2.9 1 23 842 864 842 864 0.98

9 18 0.66 55 5.3 0.5 2 20 875 893 875 895 0.90

10 18 0.049 4.1 8.9 0.2 1 23 974 996 974 996 0.97

11 18 2.6 2.1e+02 3.4 7.2 1 23 1003 1025 1003 1025 0.95

12 18 0.0017 0.14 13.4 1.8 1 23 1069 1092 1069 1092 0.95

13 18 0.00062 0.052 14.8 0.5 1 23 1099 1122 1099 1122 0.98

14 18 0.0096 0.8 11.1 0.1 2 23 1144 1166 1143 1166 0.95

15 18 0.013 1.1 10.7 5.2 3 23 1192 1213 1191 1213 0.96

16 18 0.00038 0.032 15.5 1.2 1 23 1238 1260 1238 1260 0.96

17 18 0.00015 0.013 16.7 0.1 1 23 1266 1288 1266 1288 0.97

18 18 0.00048 0.04 15.2 0.7 3 23 1296 1317 1294 1317 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.1	1.8e+02	3.7	0.9	2	23	490	511	489	511	0.90
2	18	0.017	1.4	10.3	0.0	1	23	521	544	521	544	0.94
3	18	2.1	1.8e+02	3.7	1.0	2	21	640	659	640	660	0.92
4	18	0.045	3.7	9.0	3.8	2	23	721	742	720	742	0.95
5	18	1.1	92	4.6	0.9	1	23	754	778	754	778	0.90
6	18	0.00016	0.014	16.6	0.3	2	23	785	808	784	808	0.97
7	18	0.28	23	6.5	0.4	1	23	814	836	814	836	0.93
8	18	0.0043	0.36	12.2	2.9	1	23	842	864	842	864	0.98
9	18	0.66	55	5.3	0.5	2	20	875	893	875	895	0.90
10	18	0.049	4.1	8.9	0.2	1	23	974	996	974	996	0.97
11	18	2.6	2.1e+02	3.4	7.2	1	23	1003	1025	1003	1025	0.95
12	18	0.0017	0.14	13.4	1.8	1	23	1069	1092	1069	1092	0.95
13	18	0.00062	0.052	14.8	0.5	1	23	1099	1122	1099	1122	0.98
14	18	0.0096	0.8	11.1	0.1	2	23	1144	1166	1143	1166	0.95
15	18	0.013	1.1	10.7	5.2	3	23	1192	1213	1191	1213	0.96
16	18	0.00038	0.032	15.5	1.2	1	23	1238	1260	1238	1260	0.96
17	18	0.00015	0.013	16.7	0.1	1	23	1266	1288	1266	1288	0.97
18	18	0.00048	0.04	15.2	0.7	3	23	1296	1317	1294	1317	0.95

Sequence Information

Coding Sequence: ATGACGGAGCCGCAACCACCATTGATCCTCTGCATGGAGAATGCGTCGGGTGAGGACGTGGCGCTCAGGATAGAACCAGATGATAACTTCCAGATGTTTCTGGATAAGGCCAGGTCACTCCTAGGCTTCGATGTAGACATAAACTCGATAACCAGAAACCAGCCCGTTTCACTATCAGAAAACGTCTACCAATTCCTAGTAAACGCTGAACAAAACTTACAAGCAGACGAGCTAACACAAAACTTTGACCAAATGTTGGACCCCAACGATGGAGCCAACGACTTGGTCTACATATTGGACGATGGCACACAAATCCGTGCCTCACAAATACACTTTGACAATGATGATCCTTTAGTTGATTTGACTGCTGagaaaataccttttgttaaataCGCTGAAGACGTCACTGACGTAGATGTTGATGATATAAATATTCAcgaaactaagaaaattaatattgttgaaAGTCCTGTGTCCAGATGGTCAAGTAAAAACTCTAGCCCAAAATGCAGTTTTGTCAACTCTCTACCATTCAAATTAGTGTGCAATAATACTTCGGGTTTCGAAGCTCAATTCACGAAATATTTAGAAGCGAATACAACAAAAACCTACGCGACCCTAAACCCTGTCACAACTCGAAATAAATCCCCGAAAAGTTTGATCAaagataattttaagaactacGATGATAACTATCAGAGGAATGATAACTTGTCGTACACTCGGGAGGAGATTTTGAACATGTTCAAAGACTCCCCGATGACGTCACTGCCGTATGACCAGGGTTACAGTGAGAGGAGACATGTTCGGAAGACGGATCCTTCGAGACTTGTTCATAAGAGTTGGAGTAAGCCTCTTTCTTACGTCGACATTGATGGGGTATTAATTGGGGAGAGCGAGAGTCAAATCtgttttatttgcggcaaacatgtgGATAACAATGTTGATAAATTGTACCTTTTTGATAACGAAGATCAGAGGTTATATCGGTGTTCTCCGCAGAAGAAAATGTCGACTCAGCTAAAAATTATCTGCGAGGGTTGTCTTAACGAAAACTTCACTCCATGTAGAATGAAAAGCGCAAATCAATTCTTGAATCCTGACGAATACCTCGTGATCAGAAACAATCAGCAATACATCTTccagaaagttaaaaacttCAATTTCGCGCACCTAGGTAAAGCTAAAGAAATCATAAACAAGATAGAGAAGAAAACAGACAAGGAAGAGTTTGTTAAAGTCGAAATTGGCTCTGATGGAGAAATTATTACCAAGCCCATAGACGCTCGGTCTGAtgacattattattgttaaagatGAGAAGAAGGAGGGCAGTTCGAGTGACGTAGAGATTGTAGAGCCGGAACCAGAGATAGATAATATCATAGACAATTTGGAGGAAGCTGATGAGGAGGTGAAAGAGTTTTTGGGGAAATATCAACGCGATGATAGTGAAGTTACTGAGTTAAAATGcagATTCTGTGAGCAAATCTTCTCAGACCTGGCGGCAGTGACAGATCACTGTGAAACGCACAAACATGACCTAGAAGATGGAGAAGTATTTCCTTGTCCACTCTGCAATTATGGTTATGCAAATTTAAAATGGCTGAAAGGTCATGTGAAGGCGGCTCACGAGAAGGCTGAAAcgccaaaaatattaaaagatgaAAATGAACCTGTTAAAGAGGAGAATAAAGAGGATGAGAAGTCGGATGAAGTTAAGGCTGATTCTAAAACTGAGGTGACGGAGCCACCCATCATAAAAACGGAGGTAAAGCAAGAATGCGTGGACAGCAGTGAGGATGAGATCTGGATCGTTCAGACTGCTGATGCCGAAGCCACACAGGAGCTGCAGAAATTACTCTGTAGTGCCAAAGTTAAAGGAGATGGGCAAGATGGTGAATCTGAAAAGACACCTAAATGTTTTAATTGCGGTCAGATATTCCTGAACGCAGATGGCCTGTCAAGCCATCGCTGTAGAAGACGCAACCAGAAGCGGAAGGCCAAGGACAAccttatatgtatacctactgaGGAAGACTTCTTGAAGAGAGCTCAGGGTCGCCCTCGGCCAGGTGATACGTCAACAGACAGTGATCTTCTTACTATGCGGCCTCGTAAACGCCGCAGCCGAGAACCGACCTCCAACCCTCAGGTGGTGACCTGCCACAACTGTAATGAGTCCTTCACGTCCAAAGTTAGGCTCAAGTTTCATATGCAGTTCCACGAAACATCAAACCAAGCCCGGTCAGACGGGCGCTACTCCTGCTCCGAGTGTGACAACGCCACCTTCGCCACGGAGACGGAGCTCTTCGACCACGTGCACTTCCAGCATGACAAGCAGAAGAGGTGGCAGTGTCCCGTCGAGGGCTGCGGGAAGACTTTCTTCCTCAGGGCAACCCTAACAAAGCACAGTCGCACGCACACAGACACACGACGATATGTGTGCGTCACATGTAACAAGCGGTTTTTAGACAAACAGACGCTAGATGAACATGGAGTGACGCATTTACAGATAAAACCCTTCCAATGCCACATATGCCTGAAGCAGTTAACCCGTCGCTCGCGCTTGCGTATGCATGTGCGCGCGCACGAAGAGGAGTTGGCGCCGAGGCTTGTGCGCGTCTGTGCGGTCTGCACGAGGGCCTTTAGAGATCATCGGCATGCACAGGAGCACGCATCAAAATCGACAGAATGTATCGAAGCCTTCGCAAACGAATTAAAAGAGGAAGCGGAAGAGGTGTCAGTACAGTTGTCGCCTACCAGTGGACTTGTCAGACATACTGTGCAGATAATTGAATCTCCGAAACTATCAAAGCCGATAAAACGCCAAGTGTCGAATGAAATGGGCGAGCACCTCCTGTCTCAGTTAGCTGACGAAGCGCGCGCTCTGATAAGGGTGGTCGAGATTGAGAAGGCGTTCCGCTGCGAGTATTGTGAAGAtGTATTTTATTTGGAGAGCGGTCTGAACACGCACCGCGCGATACACAAAGGAGTTAAAAATCCCTTCACCTGCCACATCTGTAAAGTTAGCTTTGCTACTTATTCCAGATGCACAACCCACAAAACAACGCACGGCTTCTACAAACGCTCACTAGCCGACGCTAAGAAACAAGCCGACGGTCCCGCACAAGCTGATGCTGACTCCTCCGCACGCTCTGCCATCGGCATACTGGGATATGGCGACTTTCCTGTCGTCAAACACTTCCTATGCGAGGACTGCGGCCGCTCGTACCTACACTGGACGTACCTACAAGTACACAGACGCATGAAACACGCGAATGAAAACTTTCTGTACAAATGTAACCAGTGCGAACTTACCTTTCCAAACagTTGGGGCCTGGCGTATCATCGTAAGAAGGTGCACGGCAAGTCTGGAGCTGACGACCCTGGAACCACCAACAAGAGCAACAGGGATGATTATAGGATACCGTGTCGAGATTGTGACGAGGTGTTGCCCAACAAAACAGCTTTGTACAAGCATCGTAAGAACGAACACAGCGATGGAACTGCGCGAGCTTATACTAAACCAGGCATGTATGCGAGTGCAGAGTCGGAATCCACAGGCGGAGCGTGTTCCCATTGTCACGCCACATTCACGCACGCGATTGATCTGCACAAACATGTCAAAGTAGTCCACGGTAAAGACGATGAGTCCTGCTTATCCTGTAACAAGACATCGAGCGCGCAGGGGACGTGTCCGCGCCGCCCGCACGCGTGTCCGGTCTGCGGACACGCCTTCCGGACGCTTTCTATGCGGAACGAACATCTGAGGGTACACACAGGGGAGAGACCCTTTCCTTGTGACGTTTGCGGAGTTGCGTTCAGGAGGTCCACAGCCATGCGCAACCACCGCCTCATCCACACGGGCGTGCGCGCGTGGGCGTGCGGCCGCTGCCCCAAGCGCTTCCGCATCCGCTCCGACCTGCGCACGCACCTGCGGCTCAAGCATCCCGCCACCATTGTCGTTGTAGAGATGGAAGGCCTGAACCCATCGTCTGAGGAAGTACTGAATGCGCTTGCTGCACAAAACGTTCCTCACAACAAGCTTATAGATATCACTAAGATGTCCTTCGCAAAGGGCTCAACGAGCGTGATACCTTCGTGCGCACGCGCACTATCAGCTCTGAACAACGTGCCGCGCACACACGTCGCGTGCATCAAACCTACGCCCTCACTGGAAGAATTCCAACCGGCCCGCCGAGGTCGCGGCATCGCTAAAAACCCGCGGCGACCCAAGATACTGCAGCGAGGGGAGGCGGAGCCACACGACAACTCTGCCTACCCCATCGTTGGTGAAGAGGAGCTGTCGGATCTGAACGTGCAACTCCTACTTCGGGATGGCGTGCTAGTCAACGGCAACCAGATGGTACAGCTTCAGTTAGACGACCCTATTCTGATGGAGTAG
Protein Sequence: MTEPQPPLILCMENASGEDVALRIEPDDNFQMFLDKARSLLGFDVDINSITRNQPVSLSENVYQFLVNAEQNLQADELTQNFDQMLDPNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYAEDVTDVDVDDINIHETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTTKTYATLNPVTTRNKSPKSLIKDNFKNYDDNYQRNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKSWSKPLSYVDIDGVLIGESESQICFICGKHVDNNVDKLYLFDNEDQRLYRCSPQKKMSTQLKIICEGCLNENFTPCRMKSANQFLNPDEYLVIRNNQQYIFQKVKNFNFAHLGKAKEIINKIEKKTDKEEFVKVEIGSDGEIITKPIDARSDDIIIVKDEKKEGSSSDVEIVEPEPEIDNIIDNLEEADEEVKEFLGKYQRDDSEVTELKCRFCEQIFSDLAAVTDHCETHKHDLEDGEVFPCPLCNYGYANLKWLKGHVKAAHEKAETPKILKDENEPVKEENKEDEKSDEVKADSKTEVTEPPIIKTEVKQECVDSSEDEIWIVQTADAEATQELQKLLCSAKVKGDGQDGESEKTPKCFNCGQIFLNADGLSSHRCRRRNQKRKAKDNLICIPTEEDFLKRAQGRPRPGDTSTDSDLLTMRPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHETSNQARSDGRYSCSECDNATFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCTRAFRDHRHAQEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIIESPKLSKPIKRQVSNEMGEHLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGPAQADADSSARSAIGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWGLAYHRKKVHGKSGADDPGTTNKSNRDDYRIPCRDCDEVLPNKTALYKHRKNEHSDGTARAYTKPGMYASAESESTGGACSHCHATFTHAIDLHKHVKVVHGKDDESCLSCNKTSSAQGTCPRRPHACPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEMEGLNPSSEEVLNALAAQNVPHNKLIDITKMSFAKGSTSVIPSCARALSALNNVPRTHVACIKPTPSLEEFQPARRGRGIAKNPRRPKILQRGEAEPHDNSAYPIVGEEELSDLNVQLLLRDGVLVNGNQMVQLQLDDPILME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121732;
90% Identity: iTF_01247427;
80% Identity: -