Aepo011791.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382252.1:8915869-8939527[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.7 2.7e+02 2.7 0.5 2 23 490 511 489 511 0.89 2 13 0.011 0.79 10.7 0.0 1 23 521 544 521 544 0.94 3 13 0.011 0.76 10.7 1.0 2 21 676 695 676 696 0.93 4 13 0.03 2.1 9.3 3.8 2 23 737 758 736 758 0.95 5 13 0.65 46 5.1 0.7 1 23 770 794 770 794 0.91 6 13 0.00011 0.0078 17.0 0.3 2 23 801 824 800 824 0.97 7 13 0.41 29 5.8 0.3 1 23 830 852 830 852 0.92 8 13 0.0029 0.2 12.6 2.9 1 23 858 880 858 880 0.98 9 13 0.44 31 5.7 0.5 2 20 891 909 891 911 0.90 10 13 0.033 2.3 9.2 0.2 1 23 990 1012 990 1012 0.97 11 13 1.7 1.2e+02 3.8 7.2 1 23 1019 1041 1019 1041 0.95 12 13 0.0012 0.083 13.8 1.8 1 23 1085 1108 1085 1108 0.95 13 13 0.00012 0.0084 16.9 0.5 1 23 1115 1138 1115 1138 0.98
Sequence Information
- Coding Sequence
- ATGACGGAGTCGCAACCACCATTGATCCTCTGCATGGAGAATGCGTCGGGTGAGGACGTGGCGCTCAGGATAGAACCAGATGATAACTTCCAGATGTTTCTGGATAAGGCCAGGTCACTCCTAGGCTTCGATGTAGACATAAACTCGATAACCAGAAACCAGCCCGTTTCATTATCAGAAAACGTCTACCAGTTCCTAGTAAACGCTGAACAAAACTTACAAGCAGACGAGCTAACACAAAACTTTGACCAAATGTTGGACCCCAACGATGGAGCCAACGACTTGGTCTACATATTGGACGATGGCACACAAATCCGTGCCTCACAAATACACTTCGACAATGATGATCCTTTAGTTGATTTGACTGCTGAGAAAATACCTTTTGTTAAATACGCTGAAGATGTCACTGACGTAGATGTTGATGGTATAAATATTCACGAAACTAAGAAAATTAATATTGTTGAAAGTCCTGTGTCCAGATGGTCAAGTAAAAACTCTAGCCCAAAATGCAGTTTTGTCAACTCTCTACCATTCAAATTAGTGTGCAATAATACTTCGGGTTTCGAAGCTCAATTCACGAAATATTTAGAAGCGAATACAACAAAAACCTACGCGACCCTAAACCCTGTGACAACTCGAAATAAATCCCCGAAAAGTTTGATCAAAGATAATTTTAAGAACTACGATGATAACTATCAGAGGAATGATAACTTGTCGTACACTCGGGAGGAGATTTTGAACATGTTCAAAGACTCCCCGATGACGTCACTGCCGTATGACCAGGGTTACAGTGAGAGAAGACATGTTCGGAAGACGGATCCTTCGAGACTTGTTCATAAGAGTTGGAGTAAGCCTCTTTCTTACGTCGACATTGATGGGGTATTGATTGGGGAGAGCGAGAGCCAAATCTGTTTTATTTGCGCCAAACATGTGGATAACAATGTTGACAAATTGTACCTTTTTGATAACGAAGATCAGAGGTTATATCGGTGTTCTCCGCAGAAGAAAATGTCGACTCAGCTAAAAATTATCTGTGAGTGTTGTCTTAACGAAAACTTCACTCCATGTAGAATGAAAAGCGCAAATCAATTCTTGAATCCTGATGAATACCTCGTGATCAGAAACAATCAGCAATACATCTTCCAGAAAGTTAAAAACTTCAATTTCGCGCACCTAGGTAAAGCTAAAGAAATCATAAACAAGATAGAGAAGAAAATAGACAAGGAAGAGTTTGTTAAAGTCGAAATTGGCTCTGATGGAGAAATTATTACCAAGCCCATAGACACTAGGTCTGATGACATTATTATTGTAAAAGATGAGCAGAAGGAGGGCAGTTCGAGTGACGTAGAGATTGTAGAGCCGGAACCAGAGATAGATAATATCATAGAAAATTTGGAGGAAGCTGATGAGGAGGTGAAAGAGTTTTTGGGGAAATATCAACGCGATGATAGTGAAGTTACTGAGTTAAAATGCAGATTCTGTGAGCAAATCTTCCCGGACCTGGCGGCAGTGACAGATCACTGTGAAACGCACAAACATGACCTAGAAGATGGAGAAGTATTTCCTTGTCCACTCTGCAATTATGGTTATGCAAATTTAAAATGGCTGAAAGGTCATGTGAAGGCGGCTCATGAGAAGACTGAAACGCCAAAAATATTAAAAGAAGAAAATGTACCAGTCAAAGAGGAGAATAAAGATGACGAAGAGACAAAATCAAAAGCATCTTCATCTGCTAAAGCACGATCATCACCCATTGCAACTCGCACTAGAAGTTCTAGTAAAAAGGGAGATGGCGATAGAAAAGAGGATGAGACGTCGGATGAAGTTAAGGCTGATTCTAAAACCGAGGTGACGGAGCCACCCATCATAAAAACGGAGGTAAAGCAAGAATGCCTGGACAGCAGTGAGGATGAGATCTGGATCGTTCAGACTGCTGATGCCGAAGCCACACAGGAGCTGCAGAAATTACTCTGCAGTGCCAAGGTTAAAAAAGATGGGCAAGATTGTGAATCTGAAAAGACACCAACATGTTTTAATTGCGGTCAGATATTCACGAACGCAGATGGCCTGTCAAGCCATCGCTGTAGAAGACGCAACCAGAAGCGGAAGTCCAAGGACAACCTTATATGTATACCTACTGAAGAAGACTTCTTGAAGCGGCCTCGTAAACGCCGCAGCCGGGAACCGACCTCCAACCCTCAGGTGGTGACCTGCCACAACTGTAACGAGTCCTTCACGTCCAAAGTTAGGCTCAAGTTTCATATGCAGTTCCACGAAACATCAAACCAAGCCCGGTCAGACGGGCGCTACTCCTGCTCCGAGTGTGACGACGCCACCTTTGCCACGGAGACGGAGCTCTTCGACCACGTGCACTTCCAGCACGACAAGCAGAAGAGGTGGCAGTGTCCCGTCGAGGGCTGCGGGAAGACTTTCTTCCTCAGGGCAACCCTAACAAAGCACAGTCGCACGCACACAGACACACGACGATATGCGTGCGTCACATGTAACAAGCGGTTTTTAGACAAACAGACGCTAGATGAACATGGAGTGACGCATTTACAGATAAAACCCTTCCAATGCCACATATGCCTGAAGCAGTTAACCCGTCGCTCGCGCTTGCGTATGCATGTGCGCGCGCACGAAGAGGAGTTGGCGCCGAGGCTTGTGCGCGTCTGTGCGGTCTGCACGAGGGCCTTTAGAGATCATCGGCATGCACAGGAACACGCATCAAAATCGACAGAATGTATCGAAGCTTTCGCAAACGAATTAAAAGAGGAAGCGGAAGAGGTGTCAGTACAGTTGTCGCCTACCAGTGGACTTGTCAGACATACTGTACAGATAATTGAATCTCCGAAGCTATCAAAGCCGATCAAACGGCAAGTGTCGAACGAAATGGGCGAGCACCTCCTGTCTCAGTTAGCTGACGAAGCGCGCGCTCTGATAAGGGTGGTCGAGATTGAGAAGGCGTTCCGCTGCGAGTATTGTGAAGATGTGTTTTATTTGGAGAGCGGTCTGAACACGCACCGCGCGATACACAAAGGAGTCAAAAATCCCTTCACCTGCCACATCTGTAAAGTTAGCTTTGCTACTTATTCCAGATGCACAACCCACAAAACAACCCACGGCTTCTACAAACGCTCACTAGCCGACGCTAAAAAACAAGCCGACGGCCCCGCACAAGCTGATGCTGACTCCTCTACACGCTCTGCCACCGGCATACTGGGATACGGCGACTTTCCTGTCGTCAAACACTTCCTATGCGAGGACTGCGGCCGCTCGTACCTACACTGGACGTACCTACAAGTACACAGACGCATGAAACACGCGAATGAAAATTTTCTGTACAAATGTAACCAGTGCGATCTTACCTTTCCAAACAGTTGGGGCCTGGCGTATCATCGTAAGAAGGTGCACGGCAAGTCTGGAGCTGACGACCCTGGAACCACCAACAAGAGCAACAGAGATGATTATAGGTATCCTTAA
- Protein Sequence
- MTESQPPLILCMENASGEDVALRIEPDDNFQMFLDKARSLLGFDVDINSITRNQPVSLSENVYQFLVNAEQNLQADELTQNFDQMLDPNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYAEDVTDVDVDGINIHETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTTKTYATLNPVTTRNKSPKSLIKDNFKNYDDNYQRNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKSWSKPLSYVDIDGVLIGESESQICFICAKHVDNNVDKLYLFDNEDQRLYRCSPQKKMSTQLKIICECCLNENFTPCRMKSANQFLNPDEYLVIRNNQQYIFQKVKNFNFAHLGKAKEIINKIEKKIDKEEFVKVEIGSDGEIITKPIDTRSDDIIIVKDEQKEGSSSDVEIVEPEPEIDNIIENLEEADEEVKEFLGKYQRDDSEVTELKCRFCEQIFPDLAAVTDHCETHKHDLEDGEVFPCPLCNYGYANLKWLKGHVKAAHEKTETPKILKEENVPVKEENKDDEETKSKASSSAKARSSPIATRTRSSSKKGDGDRKEDETSDEVKADSKTEVTEPPIIKTEVKQECLDSSEDEIWIVQTADAEATQELQKLLCSAKVKKDGQDCESEKTPTCFNCGQIFTNADGLSSHRCRRRNQKRKSKDNLICIPTEEDFLKRPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHETSNQARSDGRYSCSECDDATFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYACVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCTRAFRDHRHAQEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIIESPKLSKPIKRQVSNEMGEHLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGPAQADADSSTRSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCDLTFPNSWGLAYHRKKVHGKSGADDPGTTNKSNRDDYRYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121732;
- 90% Identity
- -
- 80% Identity
- -