Gfla025923.1
Basic Information
- Insect
- Gortyna flavago
- Gene Symbol
- -
- Assembly
- GCA_963669345.1
- Location
- OY770152.1:2552411-2575047[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.9 5.6e+02 2.1 0.7 2 23 490 511 489 511 0.89 2 17 0.0021 0.17 13.2 0.0 1 23 521 544 521 544 0.95 3 17 0.023 1.9 9.9 0.7 2 21 674 693 674 694 0.94 4 17 0.04 3.2 9.2 3.8 2 23 755 776 754 776 0.95 5 17 0.66 53 5.3 0.7 1 23 788 812 788 812 0.91 6 17 0.00014 0.011 16.9 0.2 2 23 819 842 818 842 0.97 7 17 0.25 20 6.7 0.4 1 23 848 870 848 870 0.93 8 17 0.0038 0.31 12.4 2.9 1 23 876 898 876 898 0.98 9 17 0.59 48 5.5 0.5 2 20 909 927 909 929 0.90 10 17 0.044 3.5 9.0 0.2 1 23 1008 1030 1008 1030 0.97 11 17 2.3 1.9e+02 3.6 7.2 1 23 1037 1059 1037 1059 0.95 12 17 0.0015 0.12 13.6 1.8 1 23 1103 1126 1103 1126 0.95 13 17 0.00055 0.044 15.0 0.5 1 23 1133 1156 1133 1156 0.98 14 17 0.0043 0.35 12.2 0.2 2 23 1178 1200 1177 1200 0.96 15 17 0.026 2.1 9.8 5.2 3 23 1226 1247 1225 1247 0.95 16 17 0.00034 0.027 15.7 1.2 1 23 1272 1294 1272 1294 0.96 17 17 1.5 1.2e+02 4.2 0.2 1 12 1300 1311 1300 1311 0.92
Sequence Information
- Coding Sequence
- ATGACGGAGCCGCAACCACCATTGATCCTCTGCATGGAGAATGCATCGGGAGAGGATGTGGCGCTCAGAATAGAACCAGATGATAACTTCCAGATGTTTCTTGATAAGGCCAGATTACTCCTAGGTTTTGATGTAGACATAAACTCAATAACCAGAAACCAGCCCGTTTCACTATCAGAAAACGTCTACCAATTTCTAGTAAACGCAGAACAAAACTTACAAGCAGACGAGCTAACACAAAACTTTGACCAAATGTTGGACCCCAACGATGGAGCCAACGATTTGGTCTACATATTGGACGATGGCACACAAATCCGTGCCTCACAAATACATTTCGATAACGATGATCCTTTAGTTGATTTGACAGCCGagaaaataccttttgttaaaTACGCGGATGATGTCACTgatgtagatgatgatgatataagtATTCATGAGACTAAAAAGATTAATATTGTTGAAAGTCCTGTGTCGAGATGGTCAAGTAAAAACTCTAGCCCAAAATGCAGTTTTGTCAACTCTCTACCATTCAAATTAGTGTGCAATAATACGTCCGGATTCGAAGCGCAATTCACGAAATATTTAGAAGCGAATACAACAAAAACTTACGCGACCCTAAACCCTGTGACAACTCGAAATAAATCCCCAAAAAGTTTGATCAaagataattttaagaactacAATGATAACTATCAGAGGAATGATAACTTGTCGTACACTCGGGAGGAGATTTTGAACATGTTCAAAGACTCCCCGATGACGTCACTGCCGTATGACCAGGGTTACAGTGAGAGGAGACATGTTCGGAAGACGGATCCTTCGAGACTTGTCCATAAGAGTTGGAGTAAGCCTCTTTCTTACGTCGACATTGATGGGGTATTGATTGGGGAGACGGAGAGCCAAATCTgttttatttgcggcaaacatgtggATAACAACGTAGATAAATTGTACCTTTTTGATAACGAAGACCAGAGGTTATATAGGTGTTCTCCGCAGAAGAAAATGTCGACTCAGCTAAAAATTATCTGCGAGTGTTGTCTCAACGAAAACTTCACACCATGTAGAATGAAAAGCGCAAATCAATTCTTAAACCCTGATGAATATCTCGTCATAAGAAATAATCAGCAATACATCTTccaaaaagtcaaaaacttCAATTTCGCACACCTAGGTAAAGCTAAAGAGATCATAAACAAGATAGAGAAGAAAATAGACAAGGAAGAGTTTGTTAAAGTCGAAATTGGCTCTGATGGAGAAATTATAACAAAGCCCATAGACACTAGGTCTGATGACATCATTATCGTTAAAGATGAGAAGAAGGAGGGCAGTTCGAGTGACGTAGAGATTGTAGAGCCGGAACCAGAGATAGATAATATCATAGACAATTTGGAGGAAGCTGATGAGGAGGTGAAAGAGTTTTTGGGGAAATATCAGCGTGATGATAGTGAAGTTACTGAGTTAAAATGCAGATTCTGTGAGCAAATCTTCGAGGATCTGGCGGCAGTAACAGATCACTGTGAAACGCATAAACATGACCTAGAAGATGGAGAAGTATTTCCTTGTCCACTCTGCAATTATGGTTATGCAAATTTAAAATGGCTAAAAGCTCATGTGAAAGCTGCCCACGAGAAGACTgaaacgccaaaaatattaaaagatgaAAATGAACCCCAGAAAGAGGAAAATAAAGATGACGAAGAGACAaaagcatcatcatctgctaaAGCACGATCATCACCCATTGCGACTCGCACTAGAAGTTCTAGTAAAAAGGGAGATGGCGATAGAAAAGACGATGAAAAGACGGATGAAGTAAAGGCTGATTCTAAAACTAAGGTGACGGAGCCACCCATCATAAAAACGGAGGTAAAGCAAGAATGCGTGGACAGCAGCGAGGATGAGATCTGGATCGTTCAGACTGCTGATGCCGAAGCCACACAGGAGCTGCAGAAACTACTCTGTAGTGCCACGgTTAAAAAAGATGGGCAAGATGGTGAATCTGAAAAGGCacctaaatgttttaattgcGGTCAAATATTCGCGAACGCAGATGGCCTGTCAAGCCATCGCTGTAGAAGACGTAACCGGAAGCGGAAGTCCAAAGACAAccttatatgtatacctactgaGGAAGACTTCTTGAAGAGAGCTCAGGGACGCCCTCGACCAGCTGATACGTCAAAAGACACTGATCTTCTTGCTATGCGTCCCAAAAAACGCCGCAGCCGGGAACCGACCTCCAATCCTCAGGTGGTGACTTGCCACAACTGTAACGAGTCCTTCACGTCTAAAGTTAGACTCAAGTTTCACATGCAGTTCCACGAAACCTCAAACCAAGCCCGGTCCGACGGGCGCTACTCCTGCACCGAGTGTGACGACGCCTCCTTCGCCACGGAGACGGAACTCTTCGACCACGTGCACTTTCAGCACGATAAGCAGAAGAGGTGGCAGTGTCCCGTCGCGGGCTGCGGGAAGACCTTCTTCCTCAGGGCAACCCTAACAAAGCACAGTCGCACGCACACAGACACTCGACGATATGTGTGCGTCACATGTAACAAGCGGTTTTTGGACAAACAGACGCTAGATGAACATGGCGTGACGCATTTACAGATAAAACCCTTCCAATGCCACATATGCCTGAAGCAGTTAACCCGTCGGTCGCGCTTGCGCATGCATGTGCGCGCGCACGAAGAGGAGTTGGCGCCGAGGCTTGTGCGCGTCTGTGCGGTCTGCACGAGGGCCTTTAGAGATCATCGGCATGCACAGGAGCACGCGTCAAAGTCTACAGAATGTATTGAAGCTTTTGCGAATGAATTAAAAGAGGAAGCAGAAGAGGTGTCGGTACAATTGTCGCCTACCAGTGGACTTGTCAGACACACAGTGCAGATAATTGAATCTCCGAAGCTATCAAAGCCGATCAAACGCCAAGTGTCGAATGAAATGGGCGAGCACCTTCTGTCCCAGTTAGCTGATGAAGCGCGCGCTTTGATAAGAGTGGTCGAGATTGAGAAGGCGTTCCGCTGCGAGTATTGTGAAGAtgtttTCTATTTGGAAAGCGGTCTGAACACGCACCGCGCGATACACAAAGGAGTCAAAAATCCCTTCACTTGTCACATCTGTAAAGTTAGCTTCGCTACTTATTCCAGATGCACAACCCACAAAACAACGCACGGTTTCTATAAACGCTCGCTAGCCGACGCTAAGAAACAAGCCGACGGTCCCGCACAAGCTGATGCCGACTCCTCCGCCCGCTCTGCCACTGGCATACTAGGATACGGCGACTTTCCTGTCGTCAAACACTTCCTTTGCGAGgACTGTGGGCGCTCGTACCTGCACTGGACGTACCTACAAGTACACAGACGCATGAAACACGCAAATGAAAATTTTCTGTACAAATGTAACCAGTGCGAACTTACATTTCCTAACAGTTGGGGACTGGCGTATCATCGTAAGAAGGTGCACTGCAAATCTGGAGCTGACGACCCTGGAACCACTAATAAAAGCAACAGGGATGATTACAGGATACCGTGTCGGGATTGTGACGAGGTGTTGCCCAACAAAACTGCTTTATACAAACATCGTAAGAAAGAACACAGCGATGGAACTGCACGGGCTTATACAAAACCGGGAATGTATGCGAGTGCAGAGTCAGAATCTACAGGCGGAGCGTGTTCCCATTGTCACGCCACATTCACCCACGCGATTGATCTGCACAAACACGTCAAAGAAGTCCACGGCAAAGACGATGAGTCCTGCCTATCCTGCAACAAGACATCGACGACAGAGGGAACATGCCCTCGCCGCCCGCACGCGTGTCCCGTCTGCGGACACGCCTTTCGGACGCTCTCTATGCGGAACGAACATCTGAGGGTACATACAGGGGAGAGACCCTTCCCTTGTGACGTCTGCGGAGTTGCGTTCAGGAGGTga
- Protein Sequence
- MTEPQPPLILCMENASGEDVALRIEPDDNFQMFLDKARLLLGFDVDINSITRNQPVSLSENVYQFLVNAEQNLQADELTQNFDQMLDPNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYADDVTDVDDDDISIHETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTTKTYATLNPVTTRNKSPKSLIKDNFKNYNDNYQRNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKSWSKPLSYVDIDGVLIGETESQICFICGKHVDNNVDKLYLFDNEDQRLYRCSPQKKMSTQLKIICECCLNENFTPCRMKSANQFLNPDEYLVIRNNQQYIFQKVKNFNFAHLGKAKEIINKIEKKIDKEEFVKVEIGSDGEIITKPIDTRSDDIIIVKDEKKEGSSSDVEIVEPEPEIDNIIDNLEEADEEVKEFLGKYQRDDSEVTELKCRFCEQIFEDLAAVTDHCETHKHDLEDGEVFPCPLCNYGYANLKWLKAHVKAAHEKTETPKILKDENEPQKEENKDDEETKASSSAKARSSPIATRTRSSSKKGDGDRKDDEKTDEVKADSKTKVTEPPIIKTEVKQECVDSSEDEIWIVQTADAEATQELQKLLCSATVKKDGQDGESEKAPKCFNCGQIFANADGLSSHRCRRRNRKRKSKDNLICIPTEEDFLKRAQGRPRPADTSKDTDLLAMRPKKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHETSNQARSDGRYSCTECDDASFATETELFDHVHFQHDKQKRWQCPVAGCGKTFFLRATLTKHSRTHTDTRRYVCVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCTRAFRDHRHAQEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIIESPKLSKPIKRQVSNEMGEHLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGPAQADADSSARSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWGLAYHRKKVHCKSGADDPGTTNKSNRDDYRIPCRDCDEVLPNKTALYKHRKKEHSDGTARAYTKPGMYASAESESTGGACSHCHATFTHAIDLHKHVKEVHGKDDESCLSCNKTSTTEGTCPRRPHACPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121732;
- 90% Identity
- iTF_01247427;
- 80% Identity
- -