Pgri056050.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia griseotomentosa
Gene Symbol
L
Assembly
GCA_963931875.1
Location
OZ007564.1:163690076-163710992[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.5e-06 0.0014 20.7 1.7 1 23 215 237 215 237 0.98
2 19 0.71 1.2e+02 5.2 5.8 1 23 243 265 243 265 0.98
3 19 3.7e-07 6.1e-05 25.0 3.1 1 23 271 293 271 293 0.99
4 19 1.7e-05 0.0028 19.8 0.3 1 23 299 321 299 321 0.98
5 19 4.2 6.9e+02 2.8 0.8 2 23 386 409 385 409 0.85
6 19 0.0034 0.56 12.5 0.2 2 23 436 458 435 458 0.96
7 19 0.045 7.4 9.0 0.7 1 23 558 580 558 580 0.97
8 19 0.49 81 5.7 2.0 2 23 588 609 587 609 0.95
9 19 0.00077 0.13 14.5 0.4 1 23 617 641 617 641 0.93
10 19 0.35 58 6.2 0.1 1 19 646 664 646 666 0.93
11 19 4.5 7.4e+02 2.7 0.4 3 23 678 699 676 699 0.84
12 19 0.0022 0.37 13.1 2.9 1 23 738 760 738 761 0.96
13 19 4.8 8e+02 2.6 0.9 1 23 929 953 929 953 0.89
14 19 0.0013 0.21 13.9 4.8 2 23 962 984 961 984 0.97
15 19 0.19 31 7.0 0.1 1 23 990 1012 990 1012 0.92
16 19 0.063 10 8.5 1.1 2 23 1020 1041 1020 1041 0.95
17 19 0.95 1.6e+02 4.8 0.9 2 23 1131 1152 1131 1152 0.94
18 19 0.0027 0.44 12.9 0.0 1 23 1162 1184 1162 1184 0.97
19 19 0.034 5.6 9.4 0.7 1 23 1191 1213 1191 1213 0.93

Sequence Information

Coding Sequence
ATGTACTCGACACATACATCCTCAAGTTACTCACCTTCAATATCAGATGGTACTATTACACCAAATTCCCTACATcagcatcatcatcatcaccacCACCAGCATTTAGCTGTGCCACCACATTTACCATTCCCCAATTCGGCTGCTTATGAAGAAGACTCAACGTTGGCTCTACAGACACAACGTCTGCAAAGGCAAAAACCTAATGGCACCTTGGATGGCGCTGACTATGAAAACAACGCGAATGACAATGAGAACGACAACGACCAAAACAACGAAAGGATTCACAAAAATGATACAAAACTGTGCAAAGATAGCGACACAATTGTTGCAGACAGTAAGTCAACCGCAAATATTCCTGAAAGTGGCGAAGAACATCATCAACATCCACAGCAGCAAACACAGCAACATCATCAACTTAAACGTCATGGTCGTCATCATCGTTATGCTGAACATGCCTTAAGAATTCCTTCAAAATTACGTAAAATCGATAGGGATTCAACGACGGTGGGTAATGGTGCTAGTGCCATTGGCGTTGGTAGTGGTGGCACTCTTACAGCAAATGCAGTCAAGTTTGATAAGTTGACAGGAGATGGCATTAAAAGTGGTAACAATGCTGCCGGTGCCGGTGCCGACGGATCCTATCAATGTCAATTCTGTGATAAATCATTTCCGCGTCTTGGTTATTTGAAAAAACATGAGCAGaGCCATGCTGAACATTTGCCTTTTAAATGTGATTACTGTGCTCGCCTCTTTAAGCACAAACGTTCCCGTGACCGTCATACTAAATTGCATACAGGCGATCGTCGTTATCGCTGCCCTCATTGCGAAGCGGCCTTTTCAAGaagCGATCATTTAAAGATCCATATGAAAACACATGATAACCAAAAACCATTTCAATGTACTATTTGTAATCGGGGCTACAACACGGCCGCAGCTCTTACATCTCATAtgcaaaatcataaaaaacaagCTGCTCTTTTGGCTGCAGGTGGAAATCCGCAAGCTATCAATTACAGCCCACGTTCTACAGGCTCAGCTTCTAGCAATGGCAGTTTACAGAAGAGGCGTTATGGTTTAGCTGGAGCAGCAGAACAGAGCCCCAATCGCCTTGATTATCCAAAACGTGGTCGTTCATCGTCGTCAAATGTGCTCAAGTGCACATTTTGCTCAAAGTCTGATTTCACTGCAGTGGAACAGTTAAACAATCATCTTCAAACTCAACACGAAAAAGAGTTGGCACATTCTATGACTCCTCCGGCCATAAACAATCATCAGGCAGTGGATAATCATACATTTCAACTATCTTGTGAATACTGCACAATGAAATTTCCCAACATCGCTGCCATGTTTCAGCATATGCGTTCAGCCCATTTAGATCGTTTAACCAGTCCCAATTCATACTTTGAGCATTTTAATCGTTTAGCTGCCTCCGGTACTTTTAGCCCCCGCTTGTTAACTGGACCACCTCTGAGAAGTACGGCTAGTGCGGAGGAGAACAACATAAAAGAGGAACACAATTTATCCAGCCCCAAATCAGTAGAGGCTTTGACACGACAAAGTGAAGATGAACCAACAGATCTTAGCCAAAATCGTAGATCCATGACACCAACAAATACTCCACAGAATTCTCCACAGGAAAACTTTCCTGCCACAGAAAAGCCAGGTTTATTTTTCTGCAACCAGTGCAATGCTGGTTTACCCGACTTTGAGTCCTTCCGCAATCATTTAAAGACCCACATTGCCCAGGGTTTGAATTTGGTATGTCATCATTGTGGGTTGTTACTTAGGGAACATGCTGAGTACGAAAGACATGTTATATCACATTTTCTCATTACAAATTCAGAGTACAATTGTTCGGGAAATTGTCAAAAGTCTTTTGGAAAACCAGAGGAATTACAAAAGCATCTATTAGATCAACATGCTATAACCATGTTTAAATGTGGTCTTTGCAGTGAAATGTTTGAATCGAAAGTTGCCATACAAGTGCATTTTGCCTGTACGCACTCGGCTGAAACTAAAATCCTAAGATGTTCGGCCTGTATGGATGTTTTCAGAACGGAAGCGGATTTTAACTTGCATGTCAAAACACGTCACCAAGCTATTAACAATACGCCTGCTCCTGTTAATTCTTTGCAGTGCATGTTTTGTCGTACGGTTTGCTCTTCAGACTTGGAAATGCAATTTCACTTGGCCGCTCATGCCAGACAGTTTCGTTGTCCTTCTTGTCCGGAAACCTTCCATGTTGAATTTTTACTTGATAGACATATGCAAACACATCATGGTGGCTTAGAGCGACCTCCACCACCTCCCCTACAGCAAAATACAGCAGAAGAACACTCATCTCCCGTTCCCAATCCAAATGCTATCTCACCTATGAACTCTCTCTATGTAAATGCTCTTTTTGGTAAATCTCCATTAATGCCATTGGCGCCACAGAACAACAACAGTAGCATTCTCGATTATAACATGGCATTTGCCTCTCACCTTAACAAGGGTCTATTTCCTAATACGGCTCCCAACAAATTCTACAATCCTCTCCAAATTGACACGAATGCCATGAAACATTCAGCCTTAATGTACGGTTTGTCACAAAGATATTTTGACACCAATCGCACTGTCATGGAGATGTatcaacagcagcagcagcaacaacaacaacatcatcagGATAGTAACAAAACACAAGGAAATTATTTTATAAGCCCCAAGCAACCAACTTCGGGAGCTCATGATGTTCATCTTAGAACAGATTTGCCCACCTCGCCAATAAACAATACTGGTTTTAGTTGTGGAATTTGTGAGCGAAATGATTTTCGCACCGAGTCTGAAGTTCATTCACATCGCAAGATTGTACACAATCTAAAGACCGGAGTCAGCTTAAAATGTGCCTATTGTTCGGGCAACTTCAAATCACGCAGTGAGTTGGAACACCATATGAAAACCTGTCATAACTCAACGGGGAAACACAAGTGTTTGATATGTGATGAGATCTTCCCTTCACCCGCCATTTTGGCCGAACACAAATTACAACATTCCAAAGTAGGGCAATCGGGAAGATGTTCCCATTGTTCAAAGGCATTAGCTGATGTAAGTGCTTTCAAAACTCATTTAACCGAACACAATACAGAAGGTCAAATGCCAGTGCAGTGTATATGTTGTCGTCAGACTTTACATTCGGAGTTTGAGATTGGTCTGCATGCAAAATTCCATGTTAAAAACTCCACTGTTCAGGAAAATGTTTGTGCTCTTTGCCTTGAGCCTATCACAAGTTCGCCCACTGAGGCCAAGGTCTGCGAGAAATGCTGCCGTAAACATAATCTCAATGCTAAATTCAAGCAACGTGAACACTTTGAACGTCCCGTCGAACTTAGGCAGTACATTGAAAATCGTTGCAATCTTTGCAAAATGATTTTGCCACACTCCCAAAAACTTCAAGAGCACTTGGTCGAACATACCTTCGCCGGTTGTGAGGATCGTGGATTTAACTGCTACATCTGTTCGGCTGTTTTCACTGCACCAAGTGGTCTGCTTAATCATATGCTCGAGCATGGTGCCAACTCAAAGCCCTATGATTGCAATTTATGTCCAGAGAAGTTCTACTTCCGTGCCGAATTAGATCATCATCTAGTCGATCACGATATAAGAGAATTGCCGGCGGCAGTTAAAAATGAGCAAGAACATTCggttaataaaaaagaacctTTAAATAGTATGAAATCAGACAAACCTGTCGAAGGATTAAACGATGTTAAACAAGAAGTAATTGAAACTGATCACAATTTCAACCATGCTGAAGAGGATGAATATATTGAAGTAGAGAAAGTCaatgaaaataataacaatattaacaaCAATCAATTAAACGAAACAGTATCGGATAAAAGAGAAGAAACTAAAGAGATTATAAGTGAACATGTCAGAGATGAGAAGGCCTAA
Protein Sequence
MYSTHTSSSYSPSISDGTITPNSLHQHHHHHHHQHLAVPPHLPFPNSAAYEEDSTLALQTQRLQRQKPNGTLDGADYENNANDNENDNDQNNERIHKNDTKLCKDSDTIVADSKSTANIPESGEEHHQHPQQQTQQHHQLKRHGRHHRYAEHALRIPSKLRKIDRDSTTVGNGASAIGVGSGGTLTANAVKFDKLTGDGIKSGNNAAGAGADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQAINYSPRSTGSASSNGSLQKRRYGLAGAAEQSPNRLDYPKRGRSSSSNVLKCTFCSKSDFTAVEQLNNHLQTQHEKELAHSMTPPAINNHQAVDNHTFQLSCEYCTMKFPNIAAMFQHMRSAHLDRLTSPNSYFEHFNRLAASGTFSPRLLTGPPLRSTASAEENNIKEEHNLSSPKSVEALTRQSEDEPTDLSQNRRSMTPTNTPQNSPQENFPATEKPGLFFCNQCNAGLPDFESFRNHLKTHIAQGLNLVCHHCGLLLREHAEYERHVISHFLITNSEYNCSGNCQKSFGKPEELQKHLLDQHAITMFKCGLCSEMFESKVAIQVHFACTHSAETKILRCSACMDVFRTEADFNLHVKTRHQAINNTPAPVNSLQCMFCRTVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGGLERPPPPPLQQNTAEEHSSPVPNPNAISPMNSLYVNALFGKSPLMPLAPQNNNSSILDYNMAFASHLNKGLFPNTAPNKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVMEMYQQQQQQQQQHHQDSNKTQGNYFISPKQPTSGAHDVHLRTDLPTSPINNTGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKALADVSAFKTHLTEHNTEGQMPVQCICCRQTLHSEFEIGLHAKFHVKNSTVQENVCALCLEPITSSPTEAKVCEKCCRKHNLNAKFKQREHFERPVELRQYIENRCNLCKMILPHSQKLQEHLVEHTFAGCEDRGFNCYICSAVFTAPSGLLNHMLEHGANSKPYDCNLCPEKFYFRAELDHHLVDHDIRELPAAVKNEQEHSVNKKEPLNSMKSDKPVEGLNDVKQEVIETDHNFNHAEEDEYIEVEKVNENNNNINNNQLNETVSDKREETKEIISEHVRDEKA