Tsol003598.1
Basic Information
- Insect
- Thelaira solivaga
- Gene Symbol
- L
- Assembly
- GCA_947397855.1
- Location
- OX377614.1:67568932-67581900[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.7e-06 0.00047 20.7 1.7 1 23 248 270 248 270 0.98 2 19 0.62 38 5.2 5.7 1 23 276 298 276 298 0.98 3 19 3.4e-07 2e-05 25.0 3.1 1 23 304 326 304 326 0.99 4 19 1.6e-05 0.00094 19.7 0.3 1 23 332 354 332 354 0.98 5 19 3.8 2.3e+02 2.8 0.8 2 23 419 442 418 442 0.85 6 19 0.0049 0.3 11.8 1.1 2 23 469 491 468 491 0.96 7 19 0.02 1.2 9.9 1.4 1 23 592 614 592 614 0.97 8 19 0.45 27 5.7 2.0 2 23 622 643 621 643 0.95 9 19 0.00022 0.013 16.1 0.3 1 23 651 675 651 675 0.94 10 19 0.54 33 5.4 0.0 2 19 681 698 680 700 0.92 11 19 4.4 2.7e+02 2.5 0.8 1 23 710 733 710 733 0.92 12 19 0.0017 0.1 13.3 1.2 1 23 772 795 772 795 0.98 13 19 4.4 2.7e+02 2.6 0.9 1 23 967 991 967 991 0.89 14 19 0.0012 0.071 13.8 4.8 2 23 1000 1022 999 1022 0.97 15 19 0.17 10 7.0 0.1 1 23 1028 1050 1028 1050 0.92 16 19 0.036 2.2 9.1 0.5 2 23 1058 1079 1058 1079 0.96 17 19 1.1 67 4.5 0.5 2 23 1171 1192 1171 1192 0.94 18 19 0.0094 0.57 11.0 0.1 1 23 1202 1224 1202 1224 0.97 19 19 0.031 1.9 9.4 0.7 1 23 1231 1253 1231 1253 0.93
Sequence Information
- Coding Sequence
- ATGATGGCTTTAAAAATGTTATACCGTGGGCCCAGTTCAAGACTAGAAAATTTAATTGAAAAGATTCAAGCAACCAAGGAAATTGTTAATGCCGACATGTACTCTACGCATACTTCGTCAAGTTATTCACCTTCAGTATCAGATGGTACACTTACGCCAAATTCTTTACATCATCATCATCATCACCATCATCAGCATTTAGCTGTGCCACCACATTTATCATTCCCTAATTCAACTTCTTATGAAGAAGATGCAACGTTGGCCCTGCAGACACAACGTCTGCAAAGACAAAAAACTAGTAGCACTTTGGATGGCGCTGACTATGAAGACAACACCAGTGACAATGGCAACGAACGTAACAGCGAAAGGATACACAAAAATGATGCAACAAAATTATGTGAAAGCAATGACACAATTGTTGCAGAAAATAATAAGATAATTGCAAATATTCCTGAAAGTGGCGAAGAACACCATCAAACACAACAACACCAACACCACCATCATCATCAACTAAAACGTCATGGCCGTCACCATCGTTATGCTGAACACATCTTAAGAATGCCTTCAAAATTACGCAAAATCGATAGGGATTCTACGGTTGGCAATGGCAACAGTGCCGTCGGTGCTGCTGCTGCTACGGCTGCCGACAGTGTTGACGTTACAACTAATGCAGTCAAGTTTGATAAGTTGACAGGAGATGGCATTAAAACTGGTAACAATGCTGCCAGTGCTGACGGGTCTTATCAATGTCAATTCTGTGATAAATCATTTCCGCGTCTTGGTTATTTGAAAAAACATGAACAGAGTCACGCTGAGCATCTACCTTTCAAATGTGAATACTGCGCTCGTCTTTTTAAACACAAGCGCTCTCGTGATCGACATACAAAGTTGCATACGGGCGATCGTCGCTATCGTTGCCCTCATTGCGAAGCGGCATTCTCAAGAAGTGATCACCTAAAAATTCACATGAAAACCCATGATAACCAAAAACCATTTCAATGCACCATTTGTAATCGTGGCTACAACACAGCGGCAGCTCTTACATCTCATATGCAAAATCATAAAAAACAAGCAGCTCTTTTGGCAGCTGGCGGTAATCCCCAAGCAATAAATTACAGTCCACGCTCTACTGGTTCAGCTTCTAGCAATGGTAGTTTGCAGAAAAGACGTTATGGCTCTGCGGGAGCACCTGAACCAAGTCCCAATCGTATGGATTATCCAAAACGTGGCCGTTCATCATCATCAAACATGCTCAAGTGTACATTTTGTTCAAAATCGGATTTTACTGCGGTCGAACAGCTGAATAATCATCTTCAAACTCAGCATGAAAAAGAATTAGCCCACTCTATGACTCCACCTACTGTAAACAACCATCCACCAGTGGAAAATCATACATTTCAATTATCATGTGAACATTGCACTATGAAATTTCCCAATATTGGTGCCATGTTTCAGCATATGCGCTCCTCCCATTTGGATCGTTTGACCAGTCCTAATTCATACTTTGAACATTTCAATCGGTTAGCAGCAACGGGGACTTTTAGTCCTCGTTTGTTGACTGGACCACCACTAAAAAGTGCAGCTAGTGCAGAGGAGAATATCATAAAAGAAGAAAACAATTTATCAAGTCCCAAATCAATGGAAGCAATGAATCGGCATAGCGAAGATGAGCCTACCGATCTAAGTCAAAATAATCGTAGGTCAACAACGCCTACAAACACAACTCAAAATTTCATCCCTGAACATGCAACTGCCAGCGAAAAGCCTGGTTTATTTTTTTGTAACCAATGCAACGACGGATTTCCTGATTTTGAATCATTTCGCAATCATTTAAAGACCCACATTTCTCAAGGACTCAATTTGGTATGCCACCATTGTGGTTTGTTATTAAGAGAACATGCTGAATATGAGAGACACGTTATATCACATTTTCTAATCACAAATTCCGAGTTCAATTGTTCGGCAAATTGCCAAAAGTCTTTTGCCAAGCCAGAAGAATTACAAAAACATCTCTTGGAACAGCATGCCATAACAATGCTCAAGTGCGGTTTGTGCAACGAAATGTTTGAATCAAAGGTGGCCATTCAAGTTCATTTTGCTTGTACACACTCGGCGGAAACTAAAATATTTAGATGTTCCGCTTGTATGGATGTTTTTCGAACAGACACAGATTTCAATGTTCACGTTAAAACTCGCCATCAAGCTGTTAACAATAATCCCGCACCAGTAAACTCGTTGCAGTGCATGTTCTGTCGAACTGTGTGTTCCTCTGATCTAGAGATGCAATTTCATTTGGCAGCTCATGCCAGACAATTTCGTTGTCCTTCTTGCCCGGAAACTTTTCATGTTGAATTTCTACTGGATCGCCATATGCAGACAAATCATGGTGGTGGCTTGGAGCGTCCACCAGCTCCGACAGCATCTCAAACTCTTACAGAAGAACAACACATATCTCCCGTTCCTAATGCAAATGCTATATCTCCAATAAACTCTTTGTATGTGAATGCTCTATTTGGCAAAACACCACTAATGCCGTTGGCACCACAAAACAACAACAGCAGCATTCTAGACTATAACATGGCCTTTGCTTCCCATCTTAACAAGGGCCTATTTTCCAATAACACTTCCAACAAATTCTACAATCCGCTACAAATTGACACGAATGTCATGAAACACTCAGCTTTGATGTATGGCCTGTCACAAAGATACTTTGATACAAATCGCACCGTTATGGAAATGTATCAGCAACAACAACAACAGCAGCAGCAACACCATCATCATCAGGACACTAATAAGGCAACAGGGAATTATTTTATAAGTCCCAAACAGCCAACAGCAGGAGCTCATGATGTTCATCATGCTAGAGACTTGCCTACCCCTCCAACAAACAATGCTGGCTTTAGTTGTGGCATATGCGAACGAAACGATTTTCGTACTGAGTCCGAAGTCCACTCCCATCGCAAAATTGTACACAATCTTAAAACGGGGGTCAGTTTAAAATGTGCCTATTGCTCGGGCAATTTCAAATCGCGGAGTGAATTAGAGCACCATATGAAAACATGTCACAATTCCACTGGCAAACACAAGTGTTTAATTTGTGATGAAATATTTCCATCGCCTGCCATTTTGGCCGAACACAAATTACAGCATTCAAAGGTGGGACAGTCGGGTAGATGTTCACATTGCTCTAAAGCATTGGTCGATGTCAGTGCCTACAAGGCTCATTTATCCGAACACAATACAGAAGGTCAAATGCCGGTACAGTGTATATGTTGTCGCCAATCATTGCACTCGGAATTTGAGATCAGTCTACATGCAAAATTTCATGTTATAAACTCCACTGTGCAAGAAAAAGTTTGTGCTCTGTGCTTGGAACCCATTACCAATTCAGCTACAGAGGCTAAGGTTTGTGAGAAATGCTGCCGCAAACATAATCTCAATACAAAATTCAAACAACAACAACGTGAGCACTTTGAACGTCCTGTCGAACTTAGGCACTACATAGAAAATCGCTGTAATCTTTGCAAAATGATTTTACCACATGCCCAGAAACTGCAAGAACATTTGGTCGAACATACGTTTGCCGGTTGTGAGGATCGTGGGTTCAATTGCTACATTTGCTCAGCAGTTTTTACAGCACCCACTGGTCTTCTCAATCACATGCTAGAACATGGCACCAACTCTAAGCCTTACGATTGCAATTTGTGTCCAGAAAAGTTTTATTTTCGCGCTGAGTTGGACCATCATTTAGTTGATCATGATGTGCGTGAATTGCCACCAACGATTAAAAATGAACAAGAATTGGCCAAGAATGAAGAGACTTTGAACAATATAAGAGCTGATAAAACCGTTGGTGGCTTAAATGAGGTTAAACAAGAACTTGTTGAAAATGAACACAATCCCCATAATGCTGAAGACGATGAGTACATTGAAGTTGAAAAGGTAAATGAAAATAACAACAACATTAACAATCAGTTGGATGAGACAGTAACGGATAGAATGCCAGAAGCTAAAGAAAAGTCTAAGGAGCATGTCAGAGATGAAAAACCATAA
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEIVNADMYSTHTSSSYSPSVSDGTLTPNSLHHHHHHHHQHLAVPPHLSFPNSTSYEEDATLALQTQRLQRQKTSSTLDGADYEDNTSDNGNERNSERIHKNDATKLCESNDTIVAENNKIIANIPESGEEHHQTQQHQHHHHHQLKRHGRHHRYAEHILRMPSKLRKIDRDSTVGNGNSAVGAAAATAADSVDVTTNAVKFDKLTGDGIKTGNNAASADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQAINYSPRSTGSASSNGSLQKRRYGSAGAPEPSPNRMDYPKRGRSSSSNMLKCTFCSKSDFTAVEQLNNHLQTQHEKELAHSMTPPTVNNHPPVENHTFQLSCEHCTMKFPNIGAMFQHMRSSHLDRLTSPNSYFEHFNRLAATGTFSPRLLTGPPLKSAASAEENIIKEENNLSSPKSMEAMNRHSEDEPTDLSQNNRRSTTPTNTTQNFIPEHATASEKPGLFFCNQCNDGFPDFESFRNHLKTHISQGLNLVCHHCGLLLREHAEYERHVISHFLITNSEFNCSANCQKSFAKPEELQKHLLEQHAITMLKCGLCNEMFESKVAIQVHFACTHSAETKIFRCSACMDVFRTDTDFNVHVKTRHQAVNNNPAPVNSLQCMFCRTVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTNHGGGLERPPAPTASQTLTEEQHISPVPNANAISPINSLYVNALFGKTPLMPLAPQNNNSSILDYNMAFASHLNKGLFSNNTSNKFYNPLQIDTNVMKHSALMYGLSQRYFDTNRTVMEMYQQQQQQQQQHHHHQDTNKATGNYFISPKQPTAGAHDVHHARDLPTPPTNNAGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKALVDVSAYKAHLSEHNTEGQMPVQCICCRQSLHSEFEISLHAKFHVINSTVQEKVCALCLEPITNSATEAKVCEKCCRKHNLNTKFKQQQREHFERPVELRHYIENRCNLCKMILPHAQKLQEHLVEHTFAGCEDRGFNCYICSAVFTAPTGLLNHMLEHGTNSKPYDCNLCPEKFYFRAELDHHLVDHDVRELPPTIKNEQELAKNEETLNNIRADKTVGGLNEVKQELVENEHNPHNAEDDEYIEVEKVNENNNNINNQLDETVTDRMPEAKEKSKEHVRDEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237143;
- 90% Identity
- -
- 80% Identity
- -