Slun002044.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- L
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010000084.1:3749731-3773032[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.7e-06 0.00059 20.7 1.7 1 23 255 277 255 277 0.98 2 19 0.69 47 5.2 5.7 1 23 283 305 283 305 0.98 3 19 3.8e-07 2.5e-05 24.9 3.1 1 23 311 333 311 333 0.99 4 19 1.7e-05 0.0012 19.7 0.3 1 23 339 361 339 361 0.98 5 19 4.3 2.9e+02 2.7 0.8 2 23 426 449 425 449 0.85 6 19 0.0024 0.16 13.0 0.2 2 23 477 499 476 499 0.96 7 19 0.046 3.1 8.9 0.7 1 23 600 622 600 622 0.97 8 19 0.054 3.7 8.7 2.1 2 23 630 651 629 651 0.96 9 19 0.00091 0.062 14.3 0.6 1 23 659 683 659 683 0.93 10 19 0.36 24 6.1 0.1 1 19 688 706 688 708 0.93 11 19 4.3 2.9e+02 2.7 0.5 3 23 720 741 718 741 0.84 12 19 0.0023 0.15 13.1 2.9 1 23 780 802 780 803 0.96 13 19 4.9 3.3e+02 2.6 0.9 1 23 976 1000 976 1000 0.89 14 19 0.0013 0.089 13.8 4.8 2 23 1009 1031 1008 1031 0.97 15 19 0.19 13 7.0 0.1 1 23 1037 1059 1037 1059 0.92 16 19 0.037 2.5 9.2 0.6 2 23 1067 1088 1067 1088 0.96 17 19 1.2 83 4.4 0.5 2 23 1178 1199 1178 1199 0.94 18 19 0.0027 0.19 12.8 0.0 1 23 1209 1231 1209 1231 0.97 19 19 0.07 4.8 8.4 0.6 1 23 1238 1260 1238 1260 0.95
Sequence Information
- Coding Sequence
- ATGATGGCTTTAAAAATGTTATACCGCGGACCCAGTTCAAGATTAGAAAATTTAATTGAAAAAATTCAAGCCACTAAGGAAATTGTTAATGCTGACATGTACTCGACACATACATCGTCCAGCTATTCACCTTCAATATCAGATGGTACCATAACACCAAATTCTTTACATCATCATCCCCATCATCATCATCATCAGCCACATCAACAGAATTTAGCTATGCCACCTCACTTACCATTCCCCAGTAATTCGGCTGCTTATGAAGAAGAGCTACAGACACAACGTCTACAAAGGCAAAAAATCTCAAATGGCTCTATGGATGGCGCTGACTATGAGGCTGAAGACAACATCAATGACAATGATAACGAGTTGGAGCACAAAAACGAAAGGATTCACAAAAATGAGACAAAATTGTGCAATGACAATGACAACGACACAATTGTGGCAGACAATAAGACAAACACAAATATTTCGGAAAGTGGCGAAGAACATCATCACCAGCAAACACATTCACATTCACATCAGCAACAGCATCATCATCAACTTAAACGTCATGGTCGTCATCATCGTTATGCTGAACATGCCTTAAGAATTCCTTCAAAATTACGTAAAATCGATAGGGATTCAACGGTTGGCAATGGTGCCACCACAAACATCGTTGGCGGTGTTGGTGTAACAACAGCAAATTCAGTCAAGTTTGATAAGTTGACAGGAGATGGCATTAAAAGTGGTAACAACAATGCAGCCAGTGCCGACGGATCCTATCAATGTCAATTCTGTGATAAATCATTTCCGCGTCTTGGTTATTTGAAAAAACATGAACAGAGTCATGCCGAACACTTGCCCTTTAAATGTGAATACTGTGCCCGACTCTTCAAGCACAAACGTTCACGCGATCGTCACACTAAATTGCATACTGGCGATCGTCGCTATCGTTGCCCACACTGTGAGGCGGCTTTTTCAAGAAGCGATCATTTAAAGATCCATATGAAAACCCATGATAATCAGAAACCCTTTCAATGTACCATTTGTAATCGAGGCTACAATACCGCCGCTGCCCTAACATCGCACATGCAAAATCATAAAAAGCAAGCCGCCCTTTTGGCTGCTGGGGGTAATCCTCAGGCCCTTAATTACAGTCCTCGTTCAACGGGCTCAGCTTCTAGCAATGGTAGTTTACAGAAAAGACGTTATGGCTTGGCAGGAGCCAGTGAACAAAGTCCCAATCGTCTGGAGTATACAAAAAGGGGACGTTCCTCTTCCTCCAATATGCTAAAGTGTACATTTTGCTCCAAATCCGATTTCACTGCAGTGGAACAGTTGAATAATCATTTACAGACTCAGCATGAAAAGGAATTGGCCCATTCAATGACACCGCCCTCAACCAGCAACAACCATCAACCCTTAGAAAATCATAACTTCCAGTTATCTTGTGAATATTGCACTATGAAATTTCCTAATATCGCTGGCATGTTTCAACATATGCGTACGGCCCATTTAGATCGTTTAACAAGCCCGAATTCCTATTTTGAGCATTTTAATCGTTTAGCTGCCTCGGGTACTTTTAGTCCTCGTCTGTTAACGGGCCCTCCCCTCAGAAGTACTGCTAGTGCCGAGGAGAATAGCATTAAAGAAGAACATAATTTGTCCAGTCCAAAATCAGTGGAAGCTCTAACAAGGCAAAGTGAAGATGAACCTACAGATTTAAGCCAAAATAATCGCAGATCAGCTACCCCCTCAAATACACCACAAAACTCTCCCCAAGAAAATTTATCGTCAAACGAAAAGCCCGGCCTATTCTTTTGCAATCAATGCAATGCCGGCTTACCCGATTTTGAATCTTTCCGCAATCATTTAAAAACTCATATTGCCCAGGGTCTGAACTTGGTGTGTCATCATTGTGGATTAATGCTTAGAGAGCATGCGGAATATGAGAGACATGTTATTTCACACTTTCTCATTACCAATTCTGAGTATAATTGTTCGAGCAACTGCCAGAAATCCTTTGGCAAACCCGAGGAATTGCAGAAACATCTGCTGGATCAACATGCCATAACCATGTTCAAATGTGGTCTTTGCAGTGAAATGTTCGAATCGAAAGTAGCCATTCAAGTACATTTCGCCTGTACTCATTCGGCCGAAACTAAAATTCTTCGATGTTCGGCCTGTATGGATGTATTCCGAAGTGAAAGTGATTTTAATTTACATGTCAAGTCCCGCCACCAAGCTGTAAATAATGGTCCAGCTGCCGTTAATACTTTGCAGTGTGTATTTTGTCGTACCGTTTGTTCCTCGGATTTGGAAATGCAATTTCATTTGGCTGCCCATGCCCGGCAATTCCGTTGCCCTTCTTGTCCGGAAACTTTCCATGTAGAATTTTTACTTGATCGTCATATGCAAACTCATCATGGAGGCCTGGAAAGACCACCTCCTCCACCACCGGCCCCAACTCAAGCTGTAACAGAAGATCATACATCACCAGTTCCCAATGCTTTATCGCCCATGAACTCTTTGTATGTAAATGCTTTATTTGGAAAGCCTCCCTTAATGCCTTTGGCACCTCAAAATAACAACAATAGCATTTTGGATTACAATATGGCCTTTGCTTCACATCTCAACAAGGGTCTATTTCCCAATACTGCACCCAACAAGTTCTATAATCCTCTACAAATTGATACAAATGCCATGAAGCATTCAGCTTTAATGTATGGTCTATCTCAAAGATATTTTGATACTAATCGTACAGTTATGGAAATGTATCAACAACAACAACAGCAGCAGCAACAACAACAGTTACATCAGGAAAATAATAATAAAGCTCCGGGAAACTATTTTATAAGTCCAAAACAACCACCCACTTCAGCAGCTGCCCATGATTCACATCATCGCACAGATTTAGCCTCATCTCCCATTAATAATACAGGTTTTAGTTGTGGCATTTGTGAACGTAATGATTTCCGCACCGAATCTGAAGTTCATTCGCATCGCAAGATTGTTCACAACCTAAAGACGGGTGTAAGTCTAAAGTGCGCCTATTGTTCGGGTAACTTTAAATCGCGCAGTGAACTGGAGCATCATATGAAAACTTGCCACAATTCTACCGGAAAACATAAATGTTTGATTTGCGATGAAATCTTTCCGTCTCCTGCTATTTTGGCCGAACACAAGTTACAGCATTCTAAAGTGGGTCAATCGGGGAGATGTTCTCATTGTTCCAAAGCTCTGGCAGACGTAAGTGCTTTCAAAGCTCATTTAACGGAACACAATACGGAGGGTCAAATGCCAGTGCAGTGCATCTGCTGCCGCCAATCATTGCATTCGGAATTCGAAATTGGACTGCATGCAAAATTCCATGTTAAAAACTCCACGGTCCAGGAAAATGTGTGTGCTTTATGCCTGGAACCCATTACCAATTCTCCCACTGAAGCCAAAGTATGCGAGAAATGCTGTCGCAAACATAACCTCAATACGAAATTCAAGCAACGCGAGCATTTTGAGCGTCCAGCCGAGCTAAGGCAATACATTGAAAATCGCTGTAATCTCTGCAAAATGATTCTACCACATGCCCAAAAACTGCAAGAACACTTGGTCGAGCATACCTTTGCCGGTTGTGAAGATCGTGGCTTCAATTGTTACATCTGCTCAGCAGTCTTTACGGCCCCTAGTGGGTTACTCAATCATATGCTGGAACATGGTGTCAACTCTAAGCCTTATGATTGTAATTTATGCCCCGAGAAATATTATTTCAGAGCAGAATTAGATCACCATTTAATCGATCATGATTTAAGAGAATCACCGTCGGCTGTTGTTAAAAATGAACAACAGCATGTTCAAGGAAATAATAAGGATAATGGCGTTGTGGGGCCTAAAATGAAATCGGAGAAACCAGTAGAAAGTTTAAATGAAGTCAAACAAGAAGTTATTGAAACTGATCATAATTCAAATATTGCCGAGGAAGATGAATATATAGAAGTGGAAAAGGTAAATGAGAATAATAACAACAACACCAATCACTTGGGTCGTTTAGAGTCGGATACAGCCAATGAAAGTAAAGAAAAAACCCAGGAACATATAAGAGATGAAAGTACATAA
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEIVNADMYSTHTSSSYSPSISDGTITPNSLHHHPHHHHHQPHQQNLAMPPHLPFPSNSAAYEEELQTQRLQRQKISNGSMDGADYEAEDNINDNDNELEHKNERIHKNETKLCNDNDNDTIVADNKTNTNISESGEEHHHQQTHSHSHQQQHHHQLKRHGRHHRYAEHALRIPSKLRKIDRDSTVGNGATTNIVGGVGVTTANSVKFDKLTGDGIKSGNNNAASADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQALNYSPRSTGSASSNGSLQKRRYGLAGASEQSPNRLEYTKRGRSSSSNMLKCTFCSKSDFTAVEQLNNHLQTQHEKELAHSMTPPSTSNNHQPLENHNFQLSCEYCTMKFPNIAGMFQHMRTAHLDRLTSPNSYFEHFNRLAASGTFSPRLLTGPPLRSTASAEENSIKEEHNLSSPKSVEALTRQSEDEPTDLSQNNRRSATPSNTPQNSPQENLSSNEKPGLFFCNQCNAGLPDFESFRNHLKTHIAQGLNLVCHHCGLMLREHAEYERHVISHFLITNSEYNCSSNCQKSFGKPEELQKHLLDQHAITMFKCGLCSEMFESKVAIQVHFACTHSAETKILRCSACMDVFRSESDFNLHVKSRHQAVNNGPAAVNTLQCVFCRTVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGGLERPPPPPPAPTQAVTEDHTSPVPNALSPMNSLYVNALFGKPPLMPLAPQNNNNSILDYNMAFASHLNKGLFPNTAPNKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVMEMYQQQQQQQQQQQLHQENNNKAPGNYFISPKQPPTSAAAHDSHHRTDLASSPINNTGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKALADVSAFKAHLTEHNTEGQMPVQCICCRQSLHSEFEIGLHAKFHVKNSTVQENVCALCLEPITNSPTEAKVCEKCCRKHNLNTKFKQREHFERPAELRQYIENRCNLCKMILPHAQKLQEHLVEHTFAGCEDRGFNCYICSAVFTAPSGLLNHMLEHGVNSKPYDCNLCPEKYYFRAELDHHLIDHDLRESPSAVVKNEQQHVQGNNKDNGVVGPKMKSEKPVESLNEVKQEVIETDHNSNIAEEDEYIEVEKVNENNNNNTNHLGRLESDTANESKEKTQEHIRDEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237143;
- 90% Identity
- -
- 80% Identity
- -