Basic Information

Insect: Gymnocheta viridis
Gene Symbol: L_1
Assembly: GCA_956483585.1
Location: OY101441.1:123172483-123182644[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 8.6e-06 0.00091 20.7 1.7 1 23 203 225 203 225 0.98

2 19 0.72 76 5.2 5.8 1 23 231 253 231 253 0.98

3 19 3.7e-07 4e-05 25.0 3.1 1 23 259 281 259 281 0.99

4 19 1.7e-05 0.0018 19.8 0.3 1 23 287 309 287 309 0.98

5 19 5.9 6.2e+02 2.3 0.7 2 23 374 397 373 397 0.84

6 19 0.0038 0.4 12.4 0.3 2 23 424 446 423 446 0.96

7 19 0.11 11 7.8 0.4 3 23 549 569 547 569 0.97

8 19 0.22 24 6.8 2.7 2 23 577 598 576 598 0.96

9 19 0.0015 0.16 13.7 0.2 1 21 606 627 606 630 0.89

10 19 0.35 38 6.2 0.1 1 19 635 653 635 655 0.93

11 19 6.1 6.5e+02 2.3 0.6 3 23 667 688 665 688 0.84

12 19 0.0022 0.24 13.1 2.9 1 23 727 749 727 750 0.96

13 19 4.9 5.2e+02 2.6 0.9 1 23 927 951 927 951 0.89

14 19 0.0013 0.14 13.8 4.8 2 23 960 982 959 982 0.97

15 19 0.19 20 7.0 0.1 1 23 988 1010 988 1010 0.92

16 19 0.028 2.9 9.7 0.6 2 23 1018 1039 1018 1039 0.96

17 19 1.2 1.3e+02 4.5 0.5 2 23 1129 1150 1129 1150 0.94

18 19 0.0027 0.29 12.8 0.0 1 23 1160 1182 1160 1182 0.97

19 19 0.024 2.5 9.9 0.9 1 23 1189 1211 1189 1211 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	8.6e-06	0.00091	20.7	1.7	1	23	203	225	203	225	0.98
2	19	0.72	76	5.2	5.8	1	23	231	253	231	253	0.98
3	19	3.7e-07	4e-05	25.0	3.1	1	23	259	281	259	281	0.99
4	19	1.7e-05	0.0018	19.8	0.3	1	23	287	309	287	309	0.98
5	19	5.9	6.2e+02	2.3	0.7	2	23	374	397	373	397	0.84
6	19	0.0038	0.4	12.4	0.3	2	23	424	446	423	446	0.96
7	19	0.11	11	7.8	0.4	3	23	549	569	547	569	0.97
8	19	0.22	24	6.8	2.7	2	23	577	598	576	598	0.96
9	19	0.0015	0.16	13.7	0.2	1	21	606	627	606	630	0.89
10	19	0.35	38	6.2	0.1	1	19	635	653	635	655	0.93
11	19	6.1	6.5e+02	2.3	0.6	3	23	667	688	665	688	0.84
12	19	0.0022	0.24	13.1	2.9	1	23	727	749	727	750	0.96
13	19	4.9	5.2e+02	2.6	0.9	1	23	927	951	927	951	0.89
14	19	0.0013	0.14	13.8	4.8	2	23	960	982	959	982	0.97
15	19	0.19	20	7.0	0.1	1	23	988	1010	988	1010	0.92
16	19	0.028	2.9	9.7	0.6	2	23	1018	1039	1018	1039	0.96
17	19	1.2	1.3e+02	4.5	0.5	2	23	1129	1150	1129	1150	0.94
18	19	0.0027	0.29	12.8	0.0	1	23	1160	1182	1160	1182	0.97
19	19	0.024	2.5	9.9	0.9	1	23	1189	1211	1189	1211	0.95

Sequence Information

Coding Sequence: atGTACTCAACGCATACTTCGTCAAGTTATTCACCTTCAATATCAGATGGTACAATTACACCAAATTCCttacatcatcatcatcatcaccatcatcaacatcaacatTTAGCCGTACCACCACATTTGCCATTCCCCAATTCGGCAGCTTATGAAGAAGGCATATCGTTGGCCCCACAGACACAACGTCTGCAAAGGCAAAGTACTAATGGCACTTTGGATGGCGCTGACTATGAAGACAACGCCAATGACAATGACAACGACCACAATAACGAAAGGACTCACAAAAATGATACTACGTTGTGTGCAGAGAATGCCACAATTGCTGCAGACAATAAGACAACCGCAAATATTTCTGAAAGTGGCGAAGAACATCATccacaacagcagcaacaagcACAGCAACAGCATCATCCTCATCATCAACTAAAGCGTCATGGTCGTCATCATCGTTATGCTGAACATGCCTTAAGAATGCCTTCAAAATTACGCAAAATCGATAGGGATTCAACGGTTGGTAATGGTGCCACAAATGCAGTCAAGTTTGATAAGTTGACAGGAGATGGCATTAAAAGTGGCAATAATGCTCCTAGTGCCGACGGATCCTATCAATGTCAATTCTGTGATAAATCATTTCCGCGTCTTGGTTATTTGAAAAAGCATGAACAGagtcATGCTGAACATTTGCCTTTCAAATGTGACTACTGTGCTCGCCTGTTTAAGCACAAGCGTTCGCGTGATCGTCACACTAAATTACATACAGGCGATCGTCGCTACCGCTGCCCCCATTGCGAGGCGGCCTTTTCAAGaagCGATCACCTGAAGATCCACATGAAAACCCATGATAACCAAAAACCATTTCAATGTACCATTTGCAATCGTGGCTACAATACCGCTGCAGCTCTTACATCTCATATGCAAAATCATAAAAAGCAAGCTGCTCTGCTAGCTGCAGGAGGCAATCCCCAAGCTATCAATTACAGTCCACGTTCTACCGGTTCAGCTTCTAGCAATGGAAGTTTGCAAAAAAGACGTTACGGTTTGGCTGGAGCAGCAGAACAAAGCCCAAACCGCTTGGACTACCCAAAACGGGGTCGTTCAGCATCATCAAATATGCTTAAGTGTACGTTTTGTTCAAAGTCTGACTTTACTGCAGTGGAACAGTTAAATAGTCATCTGCAAACTCAACACGAAAAAGAACTGGCACATTCCATGACTCCACCTGCAATAAACAACTCTCAATCCATCGAGAATCACACATTCCAACTGTCATGTGAATATTGCACTATGAAATTTCCCAATATTGCTGCCATGTTTCAACACATGCGCTCATCCCATTTGGATCGTTTGACCAGTCCCAATTCATACTTTGAACACTTCAATCGTTTAGCTGCCTCGGGTACTTTTAGTCCCCGCTTGTTAACTGGACCACCTTTAAGAAGTACTGCCAGTGCTGAGGAAACtacaattaaagaagaaaacaatttatcaaGTCCCAAATCGTTAGAAGCTACAAATCGACAAAGTGAAGATGAACCTACTGATCTGAGCCAGAACAATCGTAGATCAATGACACCCACAAATACTCCTCAAAATTCTCCCAGGGAACATGTGGCTGCCAACGAAAAGCCaggtttattattttgcaatcaaTGCAATGCTGGCTTGCCCGACTTTGAATCATTTCGCAATCACTTGAAGACCCATATTGCCCAGGGCCTCAATTTGGTATGCCATCATTGCGGTTTGCTGTTAAGAGAGCATTCCGAATATGAACGGCATGTTATATCACATTTTCTTATAACCAACTCCGAGTACAATTGTGCGGGAAATTGCCAAAAATCTTTCGCTAAGCCGGAGGAATTGCAAAAACATTTGGTGGATCAGCATGCCATAACAATGTTTAAGTGTGGACTGTGTAGTGAAATGTTTGAATCGAAAGTGGCCATACAAGTACATTTTGCTTGCACACACTCAACGGAAACCAAAATCCTTAGATGCTCGGCCTGTATGGATGTTTTTAGAACAGAAAACGATTTTAATATGCATGTTAAGACACGCCATCAGGCTGTTAATAATAATCCAGCGCCCGTTAACTCTTTGCAGTGCATGTTTTGTCGCACAGTTTGTTCCTCTGATCTGGAAATGCAATTCCATTTGGCCGCACATGCCAGACAATTTCGTTGTCCTTCTTGTCCGGAAACTTTCCATGTTGAATTTTTACTCGATCGTCATATGCAAACACATCATGGTGGTATGGAGCGTCCACCACCTCTGCCTGCACCACCACAGCAAAATGTTGCAGAAGAACACACATCTCCTTTACCCAATCCAAATGCTATATCTCCCATGAACTCTTTGTATGTTAATGCTTTATTTGGCAAGTCCCCTCTAATGCCACTGGCATCACAAAATAACAACAGCAGTATTTTGGACTACAACATGGCCTTTGCCTCGCATCTCAATAAGGGCCTGTTTCCCAACAGCACTCCCAACAAATTCTACAATCCTCTGCAAATTGATACGAATGCCATGAAACACTCAGCCCTGATGTACGGCTTATCACAAAGATATTTTGATACTAATCGCACAGTCATGGAAATGtatcaacaacagcagcagcagcagcagcaacagcaacagcaacaacaacttcACCCACAAGATAACAATAAAACGGCgggtaattattttataagtcCCAAACAGCCAAACTCACTAGCTCACGATGTTCATCATGCTAGAGACTTGCCCACTTCTCCAATAAACAATACCGGCTTTAGTTGTGGAATTTGTGAACGAAATGACTTCCGCACTGAGTCAGAAGTACACTCTCATCGCAAAATTGTGCACAATCTTAAAACGGGCGTGAGCTTAAAATGTGCCTATTGTTCGGGCAATTTTAAGTCACGCAGTGAGCTGGAACACCATATGAAAACCTGCCACAATTCCACCGGTAAACACAAGTGCTTGATATGTGATGAAATCTTTCCATCGCCTGCCATACTGGCCGAACATAAATTGCAACATTCCAAGGTGGGACAATCGGGTAGATGTTCTCATTGCTCTAAGGCATTAGCCGATGTTAGTGCCTTCAAGGCCCATCTATCCGAGCACACTACGGAGGGTCAAATGCCAGTACAGTGCATATGTTGTCGTCAGTCTTTGCACTCGGAATTCGAGATCGGCCTGCATGCAAAattccaTGTTATAAACTCCTCTGTTCAGGAACATGTTTGTGCTTTGTGCTTAGAGCCCATTACCAATTCACCCACAGAGGCCAAAGTTTGCGAGAAATGTTGTCGCAAACATAATCTAAATGCCAAATTCAAGCAACGTGAACACTTTGAACGTCCAGCCGAACTAAGGCAGTACATTGAAAATCGTTGCAATCTTTGCAAGATGATTTTGCCACATGCCCAAAAACTGCAAGAACATTTGGTCGAACATACTTTTGCCGGTTGTGAGGATCGTGGTTTCAATTGTTACATTTGCTCGGCAGTTTTCACTGCACCCAGTGGTCTGCTAAATCACATGCTAGAACATGGTACCAACTCTAAGCCCTACGATTGTAATTTATGTCCGGAAAAGTTTTACTTTCGCGCTGAGTTGGACCATCATCTAGTCAATCATGATGTACGGGAACTACCAGCGGCAGCGGCGCCCATAAAAAATGAACAGGTGCTAGCACCGAAGAAAGaagaaactttaaataatatgaaatcgGAAAAACCCATCGGAGGCTTAAATGAAGTAAAACAGGAAGTTATGGAAAATGATCTCAACTCAAATAATGCTGAAGAGGATGAATACATTGAAGTGGAGAAGGTAAATgagaacaacaacaaccacaacaacaacagtaacaTTAACAATGCGCAGCCGCATGATAAAATTTCGGATAAAATAGAAGACGCTAAAAAGAAATCCCACGAACATGTCAACGATGAAAAGgtctaa
Protein Sequence: MYSTHTSSSYSPSISDGTITPNSLHHHHHHHHQHQHLAVPPHLPFPNSAAYEEGISLAPQTQRLQRQSTNGTLDGADYEDNANDNDNDHNNERTHKNDTTLCAENATIAADNKTTANISESGEEHHPQQQQQAQQQHHPHHQLKRHGRHHRYAEHALRMPSKLRKIDRDSTVGNGATNAVKFDKLTGDGIKSGNNAPSADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQAINYSPRSTGSASSNGSLQKRRYGLAGAAEQSPNRLDYPKRGRSASSNMLKCTFCSKSDFTAVEQLNSHLQTQHEKELAHSMTPPAINNSQSIENHTFQLSCEYCTMKFPNIAAMFQHMRSSHLDRLTSPNSYFEHFNRLAASGTFSPRLLTGPPLRSTASAEETTIKEENNLSSPKSLEATNRQSEDEPTDLSQNNRRSMTPTNTPQNSPREHVAANEKPGLLFCNQCNAGLPDFESFRNHLKTHIAQGLNLVCHHCGLLLREHSEYERHVISHFLITNSEYNCAGNCQKSFAKPEELQKHLVDQHAITMFKCGLCSEMFESKVAIQVHFACTHSTETKILRCSACMDVFRTENDFNMHVKTRHQAVNNNPAPVNSLQCMFCRTVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGGMERPPPLPAPPQQNVAEEHTSPLPNPNAISPMNSLYVNALFGKSPLMPLASQNNNSSILDYNMAFASHLNKGLFPNSTPNKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVMEMYQQQQQQQQQQQQQQQLHPQDNNKTAGNYFISPKQPNSLAHDVHHARDLPTSPINNTGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKALADVSAFKAHLSEHTTEGQMPVQCICCRQSLHSEFEIGLHAKFHVINSSVQEHVCALCLEPITNSPTEAKVCEKCCRKHNLNAKFKQREHFERPAELRQYIENRCNLCKMILPHAQKLQEHLVEHTFAGCEDRGFNCYICSAVFTAPSGLLNHMLEHGTNSKPYDCNLCPEKFYFRAELDHHLVNHDVRELPAAAAPIKNEQVLAPKKEETLNNMKSEKPIGGLNEVKQEVMENDLNSNNAEEDEYIEVEKVNENNNNHNNNSNINNAQPHDKISDKIEDAKKKSHEHVNDEKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01237143;
90% Identity: -
80% Identity: -