Gang032124.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- L
- Assembly
- GCA_963681545.1
- Location
- OY813002.1:26418529-26431855[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8e-06 0.001 20.7 1.7 1 23 231 253 231 253 0.98 2 19 0.67 84 5.2 5.8 1 23 259 281 259 281 0.98 3 19 3.5e-07 4.4e-05 25.0 3.1 1 23 287 309 287 309 0.99 4 19 1.6e-05 0.002 19.7 0.3 1 23 315 337 315 337 0.98 5 19 7.9 1e+03 1.8 0.7 2 23 402 425 401 425 0.81 6 19 0.0032 0.4 12.5 0.2 2 23 452 474 451 474 0.96 7 19 0.042 5.3 9.0 0.7 1 23 575 597 575 597 0.97 8 19 0.46 58 5.7 2.0 2 23 605 626 604 626 0.95 9 19 0.00073 0.092 14.5 0.4 1 23 634 658 634 658 0.93 10 19 0.086 11 8.0 0.1 1 19 663 681 663 683 0.94 11 19 9.5 1.2e+03 1.6 0.3 3 23 695 716 693 716 0.83 12 19 0.0021 0.26 13.1 2.9 1 23 755 777 755 778 0.96 13 19 4.5 5.7e+02 2.6 0.9 1 23 950 974 950 974 0.89 14 19 0.0012 0.15 13.8 4.8 2 23 983 1005 982 1005 0.97 15 19 0.18 22 7.0 0.1 1 23 1011 1033 1011 1033 0.92 16 19 0.096 12 7.8 0.6 2 23 1041 1062 1041 1062 0.93 17 19 1 1.3e+02 4.6 1.6 2 23 1152 1173 1152 1173 0.94 18 19 0.0091 1.1 11.1 0.0 1 23 1183 1205 1183 1205 0.97 19 19 0.027 3.4 9.6 0.6 1 23 1212 1234 1212 1234 0.94
Sequence Information
- Coding Sequence
- ATGTACTCAACGCATACTTCATCAAGTTATTCACCTTCAATATCAGATGGTACTATTACACCAAATTCCTTACATCATCATCACCACCACCACCATCAGCATTTAGCCGTACCATCACATTTGTCATTCCCCAATTCGGCTGCTTATGAGGAAGACACAACGTTGGCCCTACAGACACAACGTCTGCAAAGGCAAAAAACTAATGGCACTTTGGATGGCGCTGACTATGAAGACAACGCCAATGACAATGACAATGACAACGATAACAACGACGACCATAATAACGAAAGGATTCGCAAAAATGATACAAAATTGTGCGAAGACAATGGCACAAGTGCCGCAGACAGTAAGACAGCCACAAATATTTCAGAAAGTGGCGATGAACATCATAAgcatcagcaacagcaacagcagcagcagcaccaTCAACACCAACATCACCATCATCAACTTAAACGTCATGGTCGTCATCATCGTTATGCTGAACATGCCTTAAGAATGCCTTCAAAATTACGCAAAATCGATAGCGATTTAACGGTTGGTAATGGTGCCAGTAGCGTCGGTATTGCTACTGCCACTTCTACTGCTGATGGTGTTGGTGTTGGTGTAGCAGCAAATGCACTTAAGTTTGTTAAGTCGACAGGAGATGGCATTAAAAGTGGTAATACCACAGCTAGTGCCGACGGATCCTATCAATGTCAATTCTGTGATAAATCATTTCCGCGTCTTGGTTATTTGAAAAAACATGAACAGAGCCATGCCGAACACTTGCCTTTCAAATGTGATTATTGTGCTCGCCTGTTTAAGCACAAACGTTCCCGCGATCGCCATACGAAATTGCATACGGGCGATCGCCGCTATCGCTGTCCGCATTGTGAGGCCGCTTTCTCAAGaagCGATCACTTGAAGATCCATATGAAAACACATGATAACCAAAAGCCCTTTCAATGCACCATTTGTAATCGTGGCTACAATACTGCTGCAGCCCTTACATCGCACAtgcaaaatcataaaaagcAAGCAGCCCTTTTAGCTGCCGGCGGCAATCCCCAAGCTATCAATTACAGTCCACGTTCTACCGGTTCGGCCTCTAGCAATGGCAGTTTGCAAAAGCGGCGCTATGGCTTAGCTGGAGTAACCGATCAAAGCCCTAGTCGTATTGATTATCCTAAACGGGGTCGTTCGTCATCATCAAATATGCTTAAGTGCACATTTTGTTCAAAGTCTGATTTTACTGCAGTGGAGCAATTAAATAATCACCTGCAGAGTCAGCACGAAAAGGAACTGGCCCATTCTATGACACCACCCACAACCAACCACCATCAAGTAGTAGAAAATCATACATTCCAACTGTCATGCGAATATTGTACTATGAAATTTCCCAATATCGCTGCCATGTTTCAGCACATGCGTTCAGCCCATTTGGATCGCTTGACCAGCCCCAATTCCTACTTTGAACATTTCAACCGCTTAGCTGCCTCAGGTACTTTCAGTCCCCGCTTGTTGACCGGACCACCTCTGAGAAGTACTGTCAGTACTGATGACAACTcgattaaagaagaaaataatataccgAGTCCTAAGTCAGTAGAGACTACGAATCGACAAAGTGAAGATGAACCAACCGATCTTAGTCAAAATAATCGCAGATCAATGACACCTGCCACTACTCCTCAGAATTCTCCACAAGAACATGTCGTTGCCAGCGAAAAGCCAGGCTTATTCTTTTGCAACCAATGCAATGCTGGTCTACCCGACTTTGAATCATTTCGCAATCATTTAAAGACCCACATTTCCCAGGGCCTCAACTTAGTCTGCCATCATTGCGGTTTGCTCCTAAGGGAACATGCGGAATATGAAAGACATGTTATATCCCACTTTCTTATAACGAACTCCGAGTACAATTGTTCGGGAAATTGCCAAAAATCATTTGGAAAACCGGAAGAGTTGCAAAAACATCTGTTGGATCAGCACGCCATAACAATGTTTAAGTGCGGCCTGTGCAATGAAATGTTTGAAACGAAAGTGGCCATACAAGTACACTTCGCTTGCACGCACTCGACGGAAACTAAACTCCTTAGGTGTTCGGCTTGCATGGATGTATTTAGAACGGAGGCTGATTTCAATTTGCATGTCAAGTCACGCCATCAGGCTGTTACCAGTAATCCGGCGCCAGTTAACTCCCTGCAGTGTATGTTTTGTCGTACGATTTGTTCCTCTGACCTGGAAATGCAGTTTCATTTGGCCGCGCATGCAAGACAATTTCGTTGCCCCTCTTGCCCCGAAACTTTCCATGTTGAATTTCTACTCGATCGTCACATGCAAACTCACCATGGAGGCCTGGAGCGCCCTCCACCTCCACCTCCTCCACTACAGCAAGCTATAGCAGACGAGCACACATCTCCCGTTCCCAATCCAAATGCTATGTCTCCCATGAACTCGTTATATGTGAATGCTCTATTTGGCAAATCACCTATAATGCCGTTAGCACCACAGAATAATAATAGCAGTATTTTAGACTATAATATGGCCTTTGCAAGTCATCTTAACAAGGGACTATTTCCCAACGCCACCCCCAACAAATTCTATAATCCTCTGCAAATCGATACGAATGCCATGAAACACTCCGCTTTGATGTACGGTTTATCCCAAAGATATTTTGATACCAATCGCACAGTCTTGGAAATGtatcaacaacagcagcagcaacaccaacaacaacatcacCTGCAGGATACCAATAAAACAacaggaaattattttataagtcCCAAACAGCCAGCCCCCGGACCCCACGATGTTCACCATGCTAGGGACTTGCCCACCTCTCCTGTAAATAATACCGGCTTCAGTTGTGGCATTTGCGAAAGGAATGATTTTCGCACAGAATCGGAAGTGCACTCTCATCGCAAGATTGTGCATAATCTTAAAACCGGGGTCAGTTTGAAATGTGCCTACTGTTCGGGCAATTTTAAGTCACGCAGTGAACTGGAACACCATATGAAAACCTGTCACAGTTCTACTGGCAAACACAAGTGTTTAATATGTGATGAAATCTTTCCATCACCCGCAATACTTGCCGAGCACAAGCTGCAACATTCGAAAGTGGGACAGTCGGGCCGGTGCTCTCATTGCTCTAAGGCATTAGCCGATGTCAGCGCATTCAAGTCCCATTTAGGCGAACACAATACGGAAGGTCAAATGCCAGTACAGTGTATATGTTGTCGGCAGTCCCTACATTCGGAATTCGAGATTGGCCTGCATGCAAAattcCATGTGGGGAGTACGACCGTACAGGAAAATGTTTGCGCCCTCTGCTTGGAACCCATCACCAATTCACCCACGGAGGCCAAAGTTTGCGAAAAATGCTGTCGCAAACACAATCTGAATACCAAATTCAAGCAGCGTGAACACTTCGAACGTCCTGCCGAACTAAGGCAATACATTGAAAATCGCTGCAATCTTTGCAAAATGATTTTACCACATGCGCACAAGTTACAAGAGCACTTGGTCGAGCACACCTTTGCAGGCTGCGAAGATCGCGGTTTCAACTGCTACATTTGTTCGGCCGTTTTCACAGCGCCCGGCGGTCTTCTCAATCACATGCTAGAACATGGCACCAACTCTAAGCCATACGATTGTAATTTATGTCCAGAGAAGTTCTACTTCCGCGCTGAATTGGATCATCATGTAATCGATCATGATTTACAAAAATCACCGGTGGCaattaaaaatgaacacgaGATATCGGCTAAGAAAGATGAaactttgaataatttaaaatcggAGAAACGTACCGAAGGCTTGAATGAAGTGAAACGGGAAGTCATAGAAAACGATCATAATTCCAACAATGCTGAGGATGATGAGTACATTGAAGTGGAGAAggtaaatgaaaacaacaacaacaacaatgacaatGGCAATGGCAATGGCAACAACATGACCAATCATCAGCTGGATGATAGAGTATCGAATAAAATCGAGCACGCAAAACAGGACCCCAATGAACATGCCGTAGACGAGAAGGCATAA
- Protein Sequence
- MYSTHTSSSYSPSISDGTITPNSLHHHHHHHHQHLAVPSHLSFPNSAAYEEDTTLALQTQRLQRQKTNGTLDGADYEDNANDNDNDNDNNDDHNNERIRKNDTKLCEDNGTSAADSKTATNISESGDEHHKHQQQQQQQQHHQHQHHHHQLKRHGRHHRYAEHALRMPSKLRKIDSDLTVGNGASSVGIATATSTADGVGVGVAANALKFVKSTGDGIKSGNTTASADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQAINYSPRSTGSASSNGSLQKRRYGLAGVTDQSPSRIDYPKRGRSSSSNMLKCTFCSKSDFTAVEQLNNHLQSQHEKELAHSMTPPTTNHHQVVENHTFQLSCEYCTMKFPNIAAMFQHMRSAHLDRLTSPNSYFEHFNRLAASGTFSPRLLTGPPLRSTVSTDDNSIKEENNIPSPKSVETTNRQSEDEPTDLSQNNRRSMTPATTPQNSPQEHVVASEKPGLFFCNQCNAGLPDFESFRNHLKTHISQGLNLVCHHCGLLLREHAEYERHVISHFLITNSEYNCSGNCQKSFGKPEELQKHLLDQHAITMFKCGLCNEMFETKVAIQVHFACTHSTETKLLRCSACMDVFRTEADFNLHVKSRHQAVTSNPAPVNSLQCMFCRTICSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGGLERPPPPPPPLQQAIADEHTSPVPNPNAMSPMNSLYVNALFGKSPIMPLAPQNNNSSILDYNMAFASHLNKGLFPNATPNKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVLEMYQQQQQQHQQQHHLQDTNKTTGNYFISPKQPAPGPHDVHHARDLPTSPVNNTGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHSSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKALADVSAFKSHLGEHNTEGQMPVQCICCRQSLHSEFEIGLHAKFHVGSTTVQENVCALCLEPITNSPTEAKVCEKCCRKHNLNTKFKQREHFERPAELRQYIENRCNLCKMILPHAHKLQEHLVEHTFAGCEDRGFNCYICSAVFTAPGGLLNHMLEHGTNSKPYDCNLCPEKFYFRAELDHHVIDHDLQKSPVAIKNEHEISAKKDETLNNLKSEKRTEGLNEVKREVIENDHNSNNAEDDEYIEVEKVNENNNNNNDNGNGNGNNMTNHQLDDRVSNKIEHAKQDPNEHAVDEKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237143;
- 90% Identity
- -
- 80% Identity
- -