Dcan020006.1
Basic Information
- Insect
- Dexiosoma caninum
- Gene Symbol
- L
- Assembly
- GCA_963924685.1
- Location
- OZ004728.1:58977358-58991655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.5e-06 0.00068 20.7 1.7 1 23 245 267 245 267 0.98 2 19 0.71 57 5.2 5.8 1 23 273 295 273 295 0.98 3 19 3.7e-07 2.9e-05 25.0 3.1 1 23 301 323 301 323 0.99 4 19 1.7e-05 0.0014 19.7 0.3 1 23 329 351 329 351 0.98 5 19 4.2 3.3e+02 2.8 0.8 2 23 415 438 414 438 0.85 6 19 0.0034 0.27 12.5 0.2 2 23 465 487 464 487 0.96 7 19 0.1 8 7.8 0.7 1 23 588 610 588 610 0.97 8 19 0.49 39 5.7 2.0 2 23 618 639 617 639 0.95 9 19 0.0022 0.18 13.0 0.2 1 23 647 671 647 671 0.92 10 19 0.013 1 10.7 0.1 1 19 676 694 676 696 0.96 11 19 4 3.2e+02 2.8 0.5 3 23 708 729 706 729 0.84 12 19 0.0022 0.18 13.1 2.9 1 23 768 790 768 791 0.96 13 19 4.8 3.8e+02 2.6 0.9 1 23 972 996 972 996 0.89 14 19 0.0013 0.1 13.8 4.8 2 23 1005 1027 1004 1027 0.97 15 19 0.19 15 7.0 0.1 1 23 1033 1055 1033 1055 0.92 16 19 0.0051 0.41 11.9 0.5 2 23 1063 1084 1063 1084 0.96 17 19 0.72 58 5.2 0.5 2 23 1175 1196 1175 1196 0.94 18 19 0.0027 0.21 12.8 0.0 1 23 1206 1228 1206 1228 0.97 19 19 0.026 2.1 9.7 0.9 1 23 1235 1257 1235 1257 0.93
Sequence Information
- Coding Sequence
- aTGTACTCAACACATACTTCATCCAGCTATTCACCGTCAATATCAGATGGTACTATAACGCCAAATTCCttacatcatcatcatcatcaccaccaCCATCAGCATTTAGCGGTGCCAGCACATTTATCATTCCCCAATTCGGCTGGTTATGAAGAcgatacaacaacaacaacaacagcaacaacgttGGCCCTGCAGGCACAACGTCTGCAAAGGCAAAAAATTAATGGCACTTTGGATGGCGCTGAGTGTGAAGAGAACGCCCATGATAATGACAATGACAACGACCACGAGCATAATAACGAAAGGATTCACAAAAACGATACAAAATTGTGTGAAGACAATGGCATGGCAATTGTTGCTGATATCAAGACAAGCGCAAATATTTTAGAAAGTGGCGAAGAACATCATCAACAACTGgaacaacaacagcatcaacatcagcatcagcaacaacatcatcaacatcagcatcatcatcaacTAAAACGCCATGGTCGTCATCATCGTTATGCTGAACATGCCTTAAGAATGCCTTCAAAATTACGCAAAATCGATAGGGATTCAACGTTTGGTAATGGTGCTGCCAGTGCCGCCGACGTTGCTACTGCTAATGGTATAGCTGCCggtgttggtgttggtgttggtgtGCCAGCAAATGCAGTCAAGTTTGATAAGTTGACAGGAGATGGCATTAAAACTGGTAACAATGCTGCCAGTGCCGACGGATCCTATCAATGTCAATTCTGTGATAAATCATTTCCGCGTCTTGGTTATTTGAAAAAACACGAACAGAGTCATGCTGAACACTTGCCTTTCAAATGTGACTATTGTGCTCGCCTATTTAAGCACAAGAGGTCTCGGGATCGTCACACTAAACTGCACACTGGTGATCGTCGCTATCGCTGTCCACATTGCGAGGCGGCTTTCTCAAGAAGCGATCACCTAAAGATCCATATGAAGACCCATGACAACCAAAAACCATTTCAATGTACCATATGTAATCGTGGCTATAATACTGCCGCTGCCCTAACATCGCATatgcaaaatcataaaaagcaAGCCGCACTTCTAGCAGCTGGCGGCAATCCGCAGGCTATCAATTACAGTCCACGTTCCACTGGTTCGGCTTCCAGCAATGGCAGTTTGCAGAAACGCCGTTACGGTTTGGCCGGAGCAACCGACCAAAGCCCCAATCGGATTGAGTATCCGAAACGCGGTCGTTCATCTTCGAATATGCTCAAATGCACATTTTGCTCAAAATCTGATTTTACTGCAGTGGAACAGTTAAATAATCACTTACAAACGCAACATGAAAAGGAACTGGCCCATTCTATGACGCCGCCTACAACGAATCACCATCCTTTAGCAGAGAATCATGCATTTCAATTGTCATGTGAATATTGCACCATGAAATTTCCGAATATCGCCGCCATGTTTCAACACATGCGTTCAGCGCATTTGGATCGTTTGACCAGTCCCAATTcatattttgaacattttaACCGTCTGGCTGCGTCGGGAACTTTTAGTCCCCGCTTGTTAACTGGCCTGCCTCTCAGAAGTAATGCCAGTGCAGAAGAAAATGCGATTAAGGAGGAAAATATTTTGTCGAGTCCCAAATCCGTAGAAGCCTCAACCAAACAAAGTGAAGATGAGCCCACAGATCTGAGCCAAAACAATCGCCGCTCAGTGACACCTGCCAACACCCCCCAAAATTCACCACCGGAGCACTTGGCCGCCAACGAAAAACCTGGTTTATTCTTCTGCAATCAATGTAATGCCGGCCTGCCTGACTTTGAGTCCTTCCGCAATCATCTGAAGAGCCATATTACCCAAGGCTTGAATTTGGTATGTCATCACTGCGGTTTGCTGTTACGGGAACATGCCGAATATGAAAGACATGTTATATCGCACTTTCTTATAACAAATTCAGAATACAATTGTGCGGGAAATTGCCAAAAGACCTTTGGCAAACCAGAGGAATTACAAAAACATCTCCTGGACCAGCACGCTATAACAATGTTTAAGTGTGGCTTGTGCAGCGAAATGTTTGAGACAAAAGTAGCCTTACAAGTACATTTTGCTTGTACGCACTCCgcggaaacaaaaattttaaggtGCTCCGCCTGTATGGATGTGTTTCGGAGCGAAACCGATTTCAATGTGCATGTTAAAACACGCCATCAGGCGGTCAATAATAATGCAGCACCAGTTAATTCTTTGCAGTGCATGTTTTGTCGTACGATTTGTTCGTCTGACCTGGAAATGCAATTCCATTTGGCCGCCCATGCCCGACAATTTCGTTGTCCCTCTTGTCCGGAAACTTTTCATGTGGAATTTTTACTCGATCGCCATATGCAAACACATCATGCTGGCTTAGACCGTCCACCACCACCACTGCCACCACCAACACTACCTCCTCTGACTCAGCAAAGTGTAACAGAAGAACACAGCTCTCCCGTTCCCAATCCAAATGCTATATCGCCCATGAACTCTTTGTATGTTAACGCACTATTTGGCAAATCACCCTTAATGCCGCTAACACCGCAGAATAATAACAGCAGTATTTTAGATTATAACATGGCCTTTGCCAGCCATCTTAATAAGGGACTCTTCCCCAACACTGCTCCCAATAAGTTCTATAATCCGCTGCAAATTGATACGAATGCCATGAAACACTCCGCTCTCATGTACGGTTTATCACAGCGTTATTTTGACACAAATCGTACAGTCATGGAAATGtatcagcaacaacagcagcagcaacaacaacaacaacagcaacaccaCATTCAGGATAACAATAAAACGAGCAGTAATTACTTCATAAGTCCCAAACAGCCCAACTCCGCAGCTCACGATGTTCATCATACCAGAGATATGCCCACCTCACCCTTAAATAATACAGGGTTTAGTTGTGGCATTTGTGAACGCAATGACTTTCGCACTGAATCTGAAGTCCATTCGCATCGGAAAATTGTGCACAATCTTAAAACGGGAGTGAGTTTGAAATGCGCCTATTGTTCGGGTAATTTTAAGTCGCGCAGTGAACTAGAACATCACATGAAGACCTGTCACAACTCTACTGGCAAACACAAATGTTTAATATGTGATGAAATCTTTCCCTCACCGGCCATACTGGCGGAACACAAACTTCAACATTCCAAGGTGGGACAGTCGGGTCGATGCTCGCATTGTTCGAAAGCATTAGCCGATGCTAGCGCCTTCAAGGCACATTTATCCGAACACAATACTGAAGGTCAAATGCCGGTGCAGTGTATATGCTGTCGTCAGACGCTACATTCGGAATTCGAGATTGGCCTTCATGCAAAATTTCATGTTGTGAGCTCCACTGTGCAGGAACATGTTTGTGCTCTTTGTTTGGAACCCATAAGCAATTCAAGCACAGAGGCCAAAGTTTGCGAGAAATGCTGTCGCAAGCACAATCTAAGTACCAAATTCAAACAAACACGCGAACACTTTGAGCGCCCAGCCGAATTGCGCCAGTACATTGAAAATCGCTGCAATCTTTGCAAAATGATTTTACCACATCCACAGAAACTACAAGAACATTTAGTCGAACATACCTTTGCCGGCTGCGAAGATCGTGGTTTCAATTGCTACATTTGTTCGGCTGTTTTTACTGCGCCCAGCGGTCTGCTAAATCACATGCTGGAGCATGGCATCAATTCCAAACCCTACGATTGCAATTTATGTCCAGAGAAATTTTACTTCCGCGCTGAATTGGATCATCATCAAGTCGATCATGAGACAAGGGAACCGGTGGCACCAGTAAAAAATGAACATGACTTATCGGCCAAGAAAGTGGagactttaaataatttaaaggcgGAGAGGGGCTTGAATGAAGTAAAGCAGGAAATTATCGATAATGATCGTAACTCGATTGCAGAAGACGATGAGTACATTGAGGTGGAGAAGGTAAATGAgagtaataacaacaacaacaccaacagcaacaacataaacaatCATGTGGAAGACACCCTGTTGGATAAAATCGATCAGGCGCACGAAGAGTCTCTTAAACAGGCATAA
- Protein Sequence
- MYSTHTSSSYSPSISDGTITPNSLHHHHHHHHHQHLAVPAHLSFPNSAGYEDDTTTTTTATTLALQAQRLQRQKINGTLDGAECEENAHDNDNDNDHEHNNERIHKNDTKLCEDNGMAIVADIKTSANILESGEEHHQQLEQQQHQHQHQQQHHQHQHHHQLKRHGRHHRYAEHALRMPSKLRKIDRDSTFGNGAASAADVATANGIAAGVGVGVGVPANAVKFDKLTGDGIKTGNNAASADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQAINYSPRSTGSASSNGSLQKRRYGLAGATDQSPNRIEYPKRGRSSSNMLKCTFCSKSDFTAVEQLNNHLQTQHEKELAHSMTPPTTNHHPLAENHAFQLSCEYCTMKFPNIAAMFQHMRSAHLDRLTSPNSYFEHFNRLAASGTFSPRLLTGLPLRSNASAEENAIKEENILSSPKSVEASTKQSEDEPTDLSQNNRRSVTPANTPQNSPPEHLAANEKPGLFFCNQCNAGLPDFESFRNHLKSHITQGLNLVCHHCGLLLREHAEYERHVISHFLITNSEYNCAGNCQKTFGKPEELQKHLLDQHAITMFKCGLCSEMFETKVALQVHFACTHSAETKILRCSACMDVFRSETDFNVHVKTRHQAVNNNAAPVNSLQCMFCRTICSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHAGLDRPPPPLPPPTLPPLTQQSVTEEHSSPVPNPNAISPMNSLYVNALFGKSPLMPLTPQNNNSSILDYNMAFASHLNKGLFPNTAPNKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVMEMYQQQQQQQQQQQQQHHIQDNNKTSSNYFISPKQPNSAAHDVHHTRDMPTSPLNNTGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKALADASAFKAHLSEHNTEGQMPVQCICCRQTLHSEFEIGLHAKFHVVSSTVQEHVCALCLEPISNSSTEAKVCEKCCRKHNLSTKFKQTREHFERPAELRQYIENRCNLCKMILPHPQKLQEHLVEHTFAGCEDRGFNCYICSAVFTAPSGLLNHMLEHGINSKPYDCNLCPEKFYFRAELDHHQVDHETREPVAPVKNEHDLSAKKVETLNNLKAERGLNEVKQEIIDNDRNSIAEDDEYIEVEKVNESNNNNNTNSNNINNHVEDTLLDKIDQAHEESLKQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237143;
- 90% Identity
- -
- 80% Identity
- -