Esuc002689.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- L
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000011.1:2083961-2102062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.6e-06 0.00043 20.7 1.7 1 23 239 261 239 261 0.98 2 17 0.53 34 5.3 5.7 1 23 267 289 267 289 0.98 3 17 2.9e-07 1.9e-05 25.0 3.1 1 23 295 317 295 317 0.99 4 17 1.3e-05 0.00086 19.7 0.3 1 23 323 345 323 345 0.98 5 17 0.0042 0.27 11.9 0.2 2 23 460 482 459 482 0.96 6 17 0.035 2.3 9.0 0.7 1 23 583 605 583 605 0.97 7 17 0.38 25 5.7 2.0 2 23 613 634 612 634 0.95 8 17 0.0011 0.07 13.7 0.8 1 23 642 666 642 666 0.92 9 17 0.27 18 6.2 0.1 1 19 671 689 671 691 0.93 10 17 0.0017 0.11 13.1 2.9 1 23 763 785 763 786 0.96 11 17 3.8 2.4e+02 2.6 0.9 1 23 960 984 960 984 0.89 12 17 0.001 0.065 13.8 4.8 2 23 993 1015 992 1015 0.97 13 17 0.15 9.5 7.0 0.1 1 23 1021 1043 1021 1043 0.92 14 17 0.017 1.1 10.0 0.3 2 23 1051 1072 1051 1072 0.96 15 17 0.94 61 4.5 0.5 2 23 1162 1183 1162 1183 0.94 16 17 0.0021 0.14 12.8 0.0 1 23 1193 1215 1193 1215 0.97 17 17 0.97 63 4.4 0.8 1 23 1222 1244 1222 1244 0.92
Sequence Information
- Coding Sequence
- ATGTACTCTACGCACACTTCGTCAAGTTATTCACCTTCAATATCCGACGGTACCATCACGCCGAATTCCTTACATCACCATCTTCAGCATCAGCATCAGCACCACCAACACCAACAGCATTTAGCGATGCCGCCGCATTTGGCATTCCCCAATTCGGCTGCTTATGACGAAGACTCTACGTTGGCCCTACAGACACAACGTCTGCACAGGCAAAAAACTAATGGCACTTTGgatggcgctgactatgaagacaacgccaatggcaatgacaatgacaacgacaacgacaacgaccataacaacgaaaggattcacaaaaatgatacaaaatcgtgcgaagccaaagacacaattggggcagacaataagacagccgcaaatattgctgaaagtggcgaagaacaactccaacaacaacaacaacatcaacaacaaacaaaattacaacagcatcatcaacatcaacatcatcagctgaagcgtcatggtcgacatcatcgTTATGCTGAACATGCCTTAAGAATGCCTTCAAAATTACGCAAAATCGATAGAGATTCAATGGCTGGCAATGGTGGGGCGAGCAGCGTCAGTGCCACCACTGCTGCCGCTGCCGCTGCTGGCAATGCTGGCGTCACAGCAAATGCAGTCAAGTTTGATAAGTTGACAGGAGACGGCATTAAAAGTGGCAACAATGTTGCAAGTGCCGACGGATCCTATCAATGTCAATTCTGTGATAAATCATTTCCGCGTCTTGGCTACTTGAAAAAGCACGAACAAAGTCATGCCGAGCACTTGCCCTTCAAATGTGAATACTGCGCTCGTCTCTTTAAGCACAAACGCTCCCGAGATCGTCATACTAAATTGCACACAGGCGATCGCCGCTATCGTTGTCCCCATTGCGAGGCGGCATTTTCTCGAAGCGATCACTTAAAGATCCATATGAAAACCCACGATAACCAAAAACCCTTTCAATGCACCATTTGTAATCGGGGCTACAACACTGCTGCAGCGCTTACGTCCCATATGCAAAATCACAAGAAGCAGGCGGCCTTATTGGCTGCGGGTGGCAACCCGCAAGCCTTAAACTACAGTCCGCGTTCTACGGGTTCGGCTTCCAGCAATGGAAGTTTGCAGAAGAGACGTTATGGTTTGGCTGGCGCCAGCGAACAAAGTCCCAATCACATGGAGTATCCAAAGCGTGGCCGTTCCGCCTCATCGAACATGCTGAAGTGCACTTTCTGTTCAAAGTCTGATTTTACGGCAGTGGAACAGTTAAACAGTCATTTGCACACCCAACACGAAAAAGAACTTGCCCATTCCATGACGCCACCTTCAATAAACAATCATCAACCGGCGGACAATCACGCCTTCCAATTGTCATGCGAATATTGCACAATGAAGTTTCCAAATATTGCCGGCATGTTCCAGCACATGCGTTCGGCTCACTTGGATCGTTTGACCAGTCCAAACTCGTACTTCGAACACTTTAATCGCTTGGCTGCATCGGGTACGTTTAGTCCGCGCTTGTTAACCGGGCCACCACTAAGAAGTGCCGCCACTGGAGATGGAAACGCCATAAAAGAAGAAAACCATTTATCAAGCCCAAAGTCCATAGAAGCTATAAATCGACAAAGTGAAGATGAACCAACCGATTTGAGTCAGAACAACCGCAGATCCACGACACCCACAAACACGCCACATGCCTCTCCTCCGGAACCAATAGCGGCTGTCGAAAAGCCCGGCCTGTTCTTTTGCAATCAATGCAATGCCGGCTTGCCAGACTTTGAATCCTTCCGCAATCACTTGAAGACTCACATTGCCCAAGGTCTTAACTTGGTATGTCATCATTGCGGTTTGTTATTAAGGGAACATGCCGAATACGAAAGGCATGTCATATCCCACTTCCTCATAACTAATTCGGAATACAATTGTTCAGGAAATTGCCAAAAAACATTTGGCAAGTCGGAAGAATTGCAAAAACATCTCTCGGACCAACATGCCATTACCATGTTTAAATGTGGTTTGTGCAGTGAAATGTTTGAGTCGAAAGTGGCCATACAAGTTCATTTCGCTTGCGCCCACTCGGCGGAAACTAAAATTCTCCGGTGCTCGGCTTGCATGGATGTATTTAGAACCGAAGTCGATTTCAATTTGCATGTCAAAGCTCGTCACCAGGCTGCCACTAACAATCCCGCACCCGTAAATTCGCTTCAGTGCATGTTTTGCCGCACCGTGTGTTCCTCTGACCTGGAGATGCAGTTCCATTTAGCAGCTCATGCCCGACAATTTCGTTGTCCTTCTTGTCCGGAAACTTTTCATGTCGAATTTTTGCTGGACCGTCACATGCAAACACATCATGCTGGCTTGGAGCGCCAGCTACCTGCACCTCCCACACAAGCTTTAACAGAAGAACACACTTCCCCCATTCCCACTCCCAACGCAATATCACCCATGAACTCGTTGTACGTCAACGCCTTATTTGGCAAGTCACCGCTAATGCCTTTGGCACCGCAAAACAATAACAGCAGCATTTTGGACTATAACATGGCTTTTGCCTCACATCTGAACAAGGGTCTGTTTCCCAACAGTACGCCCAACAAGTTTTACAATCCCCTGCAGATTGATACCAATGCCATGAAACACTCGGCTTTGATGTACGGCCTGTCACAGAGATATTTCGATACcaatcgcacagtcatggaaatgtatcaacatcagcagcagcagcagcagcagcaacaacagcagcaacatcaacatcaggataacaataaagccacaggaaactattttattagccccaaacagccgccgtcaggaactcatgatattcatcactctcgagagctgccaacttcccccagtaatagtgccggcttcagttgcggcATTTGCGAACGTAACGATTTTCGCACAGAGTCAGAGGTTCACTCCCACCGCAAAATTGTGCACAATCTTAAAACCGGAGTCAGCTTAAAATGTGCTTATTGTTCGGGCAACTTCAAGTCACGCAGTGAACTGGAACATCATATGAAAACCTGTCACAATTCTACGGGCAAACACAAGTGTTTGATTTGCGACGAAATCTTCCCATCGCCTGCTATTTTAGCCGAACATAAACTTCAACATTCCAAAGTCGGACAATCAGGTAGATGCTCCCACTGCGCCAAGGCCTTAGTCGATGCCAGTGCATTCAAAGCCCATTTATCCGAACACAATACGGAAGGTCAAATGCCGGTGCAGTGTATATGTTGTCGTCAGTCGTTGCACTCCGAGTTCGAGATTGGGCTGCATGCCAAATTCCATGTCATCAACTCCACGGTTCAGGAAAACGTTTGTGCTCTCTGCTTGGAACCCATTACCAATTCCGCCACAGAGGCCAAAGTTTGTGAAAAGTGCTGTCGCAAGCACAATCTAAACGCCAAATTTAAGCAGCGTGAACACTTTGAACGGCCTGCCGAAATGAGGCCGTACTTGGAAAATCGCTGCAATCTTTGCAAAATGATTTTGCCACACGCTCAAAAGCTGCAAGAGCACTTGGTGGAGCACACTTTTGCTGGTTGCGAGGATCGTGGTTTCAATTGCTACATATGCTCGGCAGTTTTTACTGCGCCCAGCGGTCTGCTAAATCACATGCTGGAGCATGGTGTCAATTCGAAGCCCTATGACTGCAATTTGTGTCCAGACAAGTTCTATTTTCGGGCTGAGTTGGACCATCACCTGGTCGATCACGACCTACGAGACTCTGCGGCAGCTGTTAAAAATGAGCAGGTGAAAGCGGCCCAGAAGGAAGAAAACACAAACGCCTTGAGTGCCGCGAAGCCTGTCAGACGGTTGAATGAAGTAAAGCAGGAAGTAATTGAAAACGACCAGAATCCCACCAATGCTGAAGAAGATGAATACATTGAGGTAGAGAAAGTCAATGAGAACAACAATACTATTAACAGCCAGCTGGAAGATGCCCGGTCGGATAAAGCCGACGCCGTCGAGGAGAAGTCAAACGAACGTGTCTGA
- Protein Sequence
- MYSTHTSSSYSPSISDGTITPNSLHHHLQHQHQHHQHQQHLAMPPHLAFPNSAAYDEDSTLALQTQRLHRQKTNGTLDGADYEDNANGNDNDNDNDNDHNNERIHKNDTKSCEAKDTIGADNKTAANIAESGEEQLQQQQQHQQQTKLQQHHQHQHHQLKRHGRHHRYAEHALRMPSKLRKIDRDSMAGNGGASSVSATTAAAAAAGNAGVTANAVKFDKLTGDGIKSGNNVASADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQALNYSPRSTGSASSNGSLQKRRYGLAGASEQSPNHMEYPKRGRSASSNMLKCTFCSKSDFTAVEQLNSHLHTQHEKELAHSMTPPSINNHQPADNHAFQLSCEYCTMKFPNIAGMFQHMRSAHLDRLTSPNSYFEHFNRLAASGTFSPRLLTGPPLRSAATGDGNAIKEENHLSSPKSIEAINRQSEDEPTDLSQNNRRSTTPTNTPHASPPEPIAAVEKPGLFFCNQCNAGLPDFESFRNHLKTHIAQGLNLVCHHCGLLLREHAEYERHVISHFLITNSEYNCSGNCQKTFGKSEELQKHLSDQHAITMFKCGLCSEMFESKVAIQVHFACAHSAETKILRCSACMDVFRTEVDFNLHVKARHQAATNNPAPVNSLQCMFCRTVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHAGLERQLPAPPTQALTEEHTSPIPTPNAISPMNSLYVNALFGKSPLMPLAPQNNNSSILDYNMAFASHLNKGLFPNSTPNKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVMEMYQHQQQQQQQQQQQQHQHQDNNKATGNYFISPKQPPSGTHDIHHSRELPTSPSNSAGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCAKALVDASAFKAHLSEHNTEGQMPVQCICCRQSLHSEFEIGLHAKFHVINSTVQENVCALCLEPITNSATEAKVCEKCCRKHNLNAKFKQREHFERPAEMRPYLENRCNLCKMILPHAQKLQEHLVEHTFAGCEDRGFNCYICSAVFTAPSGLLNHMLEHGVNSKPYDCNLCPDKFYFRAELDHHLVDHDLRDSAAAVKNEQVKAAQKEENTNALSAAKPVRRLNEVKQEVIENDQNPTNAEEDEYIEVEKVNENNNTINSQLEDARSDKADAVEEKSNERV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237143;
- 90% Identity
- -
- 80% Identity
- -