Basic Information

Insect: Tachina grossa
Gene Symbol: L
Assembly: GCA_949987645.1
Location: OX465278.1:139527976-139543249[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 9.5e-06 0.0012 20.7 1.7 1 23 221 243 221 243 0.98

2 19 0.79 1e+02 5.2 5.8 1 23 249 271 249 271 0.98

3 19 4.1e-07 5.3e-05 25.0 3.1 1 23 277 299 277 299 0.99

4 19 1.9e-05 0.0024 19.7 0.3 1 23 305 327 305 327 0.98

5 19 6 7.6e+02 2.4 0.8 2 23 392 415 391 415 0.84

6 19 0.0033 0.42 12.7 0.2 2 23 444 466 443 466 0.96

7 19 0.05 6.4 9.0 0.7 1 23 567 589 567 589 0.97

8 19 0.2 26 7.1 2.9 2 23 597 618 596 618 0.96

9 19 0.0017 0.22 13.6 0.3 1 21 626 647 626 650 0.90

10 19 0.2 25 7.1 0.1 1 19 655 673 655 675 0.93

11 19 0.89 1.1e+02 5.0 0.9 1 23 685 708 685 708 0.92

12 19 0.0022 0.28 13.3 1.2 1 23 747 770 747 770 0.98

13 19 5.4 6.9e+02 2.6 0.9 1 23 956 980 956 980 0.89

14 19 0.0014 0.18 13.8 4.8 2 23 989 1011 988 1011 0.97

15 19 0.21 27 7.0 0.1 1 23 1017 1039 1017 1039 0.92

16 19 0.11 14 7.9 0.7 2 23 1047 1068 1047 1068 0.93

17 19 1.3 1.7e+02 4.5 0.5 2 23 1159 1180 1159 1180 0.94

18 19 0.012 1.5 11.0 0.1 1 23 1190 1212 1190 1212 0.97

19 19 0.018 2.3 10.4 0.7 1 23 1219 1241 1219 1241 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	9.5e-06	0.0012	20.7	1.7	1	23	221	243	221	243	0.98
2	19	0.79	1e+02	5.2	5.8	1	23	249	271	249	271	0.98
3	19	4.1e-07	5.3e-05	25.0	3.1	1	23	277	299	277	299	0.99
4	19	1.9e-05	0.0024	19.7	0.3	1	23	305	327	305	327	0.98
5	19	6	7.6e+02	2.4	0.8	2	23	392	415	391	415	0.84
6	19	0.0033	0.42	12.7	0.2	2	23	444	466	443	466	0.96
7	19	0.05	6.4	9.0	0.7	1	23	567	589	567	589	0.97
8	19	0.2	26	7.1	2.9	2	23	597	618	596	618	0.96
9	19	0.0017	0.22	13.6	0.3	1	21	626	647	626	650	0.90
10	19	0.2	25	7.1	0.1	1	19	655	673	655	675	0.93
11	19	0.89	1.1e+02	5.0	0.9	1	23	685	708	685	708	0.92
12	19	0.0022	0.28	13.3	1.2	1	23	747	770	747	770	0.98
13	19	5.4	6.9e+02	2.6	0.9	1	23	956	980	956	980	0.89
14	19	0.0014	0.18	13.8	4.8	2	23	989	1011	988	1011	0.97
15	19	0.21	27	7.0	0.1	1	23	1017	1039	1017	1039	0.92
16	19	0.11	14	7.9	0.7	2	23	1047	1068	1047	1068	0.93
17	19	1.3	1.7e+02	4.5	0.5	2	23	1159	1180	1159	1180	0.94
18	19	0.012	1.5	11.0	0.1	1	23	1190	1212	1190	1212	0.97
19	19	0.018	2.3	10.4	0.7	1	23	1219	1241	1219	1241	0.95

Sequence Information

Coding Sequence: aTGTACTCCACTCATACTTCGTCGAGTTATTCACCTTCCATATCAGATGGTAATATTACACCAAATTCCTtacatcatcatcatcttcaCCACCACCATCAGCATTTAGCTGTGCCACCACATTTATCATTCCCCAATTCGGCTGCTTATGAAGAAGACACAACATCTTTGGCCCTACAGACACAACGTCTGCCAAGGCAAAAAACTAATGGCACTTTGGATGGCGCTGAGTATGAAGACAACGCCAATGACAACGACAACGACCACAACAACGAAAGAATGCACAAAAATGATGCCAAACTGTGTGAAGACAATGTCACAATTGCTGCCGACAATAAGACAAACGCAAATATTTCAGAAAGTGGAGAAGAACATCATCAACAACAGCATCATCAACCACATAATCATCACCATCATCAACTAAAACGTCATGGTCGTCATCATCGTTATGCTGAACATGCCTTAAGAATGCCTTCAAAATTACGTAAAATCGATAGGGATTCAACGGTTGGTGGCAACAATGGAGTCAATGCCGCCggtgttgttgctgctgctgctgatgGTGTTGGTGTTGGTGTAACAGCAAATGCAGTCAAGTTTGATAAGTTGACAGGAGATGGCATTAAAAGTGGTAATAATGCTGCTAGTGCCGACGGATCCTATCAATGTCAATTCTGTGATAAATCATTTCCGCGTCTTGGTTATTTGAAAAAACATGAACAGAGCCATGCTGAGCATTTGCCGTTCAAATGTGATTACTGTGCACGCCTGTTCAAGCACAAGCGTTCACGTGACCGCCATACGAAATTACATACAGGCGATCGGCGTTATCGCTGTCCGCATTGCGAGGCAGCATTTTCACGAAGTGATCACTTGAAGATCCACATGAAAACGCACGACAACCAAAAACCCTTCCAATGTACTATTTGCAATCGTGGCTACAACACTGCTGCGGCATTAACATCCCACATGCAAAATCACAAAAAACAGGCAGCACTTTTAGCTGCTGGCGGCAACCCCCAAGCCCTCAATTATAGTCCGCGTTCCACCGGTTCGGCTTCGAGCACTGGCAGCTTACAGAAAAGGCGTTATGGTCTGGCAGCAGCAGCCGAACAAAGTCCCAATCGTCTTGAGTATTCCAAAAGAGGTCGTTCGTCATCAACAAATATGCTTAAGTGCACGTTTTGCTCAAAATCTGATTTCACTGCAGTGGAACAGCTTAATACTCATCTGCAGACACAACACGAAAAAGAACTGGCACATTCCATGACACCACCCTCCTCAACGAACCACCATCAAGCGTTAGAAAATCACAATGCATTCCAGTTATCATGTGAATATTGTACTATGAAATTTGCTAATATCGCTGCCATGTTTCAGCACATGCGTTCAGCCCATTTGGATCGTTTGACCAGTCCCAATTCTTACTTTGAACATTTTAATCGTTTGGCGGCCTCGGGTACATTTAGTCCACGCCTGTTAACGGGACCACCACTAAGAAGTGCGGTCAGTGCAgaagaaaatataattaaagaagaaaataatttatcaaGTCCCAAGTCAGTAGATGCAGCCAATCGCCAAAGTGAAGATGAACCTACCGATTTGAGTCAAAATAATCGCAGATCAATGACACCAGCAAATACTCCCCAAAACTCTCCGCAGGACCAATTGCCGGCCAACGAAAAGCCTGGTCTATTCTTCTGCAATCAATGCAATGCCGGCTTGCCCGATTTTGAATCCTTCCGCAACCATTTGAAAACCCACATTGCCCAAGGTCTCAATTTGGTGTGCCACCACTGCGGTATGCTGCTGAGGGAACATTCCGAATATGAAAGACATGTAATATCACATTTTCTCATTACCAACTCGGAATACAATTGCACGGGAAATTGCCAAAAATCCTTTGGAAAGCCGGAGGAATTGCAAAAACATCTTGTGGATCAGCATGCCATAACAATGTTTAAGTGTAGCCTGTGCAGTGAAATGTTCGAATCGAAAGTAGCCATACAAGTACACTTTGCTTGTACACATTCGGCGGAAACCAAAATCTTTCGTTGTTCGGCCTGCATGGATGTGTTTAGAAGCGAAAGCGATTTTAACATGCACGTCAAAACGCGCCATCAAGCAGTTAATAATAATGTGGCGCCCGTAAATTCTTTGCAGTGTATGTTTTGTCGCACAATTTGTTCCTCAGACCTGGAGATGCAATTCCACTTGGCCGCACATGCCAGACAATTTCGTTGTCCCTCTTGCCCGGAAACGTTCCATGTCGAATTTCTACTCGATCGACATATGCAAACACAGCATGGTGGTTTAGAGCGACCACCACCGCCGCCGCCGCCACatcctcctcctcctcctcctgCTTCTACTGTCCAGCAAGCTATTGCCGAAGAGCACACATCTCCCGTAGCTATGCCAAATGCTATATCGCCCATGAATTCTTTGTATGTGAATGCTCTGTTTGGCAAAACACCTTTAATGCCTCTGGCCCCacaaaataataacaacagcaTTTTAGACTACAACATGGCCTTTGCCAGCCACATTAATAAGGGTCTATTTCCCAATGCCAACCCAAACAAGTTCTACAACCCTTTACAAATTGATACAAACGCCATGAAACATTCAGCCTTGATGTATGGTTTGTCGCAAAGATATTTTGATACCAATCGCACGGTCATGGAAATGTatcaacagcaacagcagcagcaccaacagcaacaacaacaacaacatcaccCCCACGACAGCAATAAAGCTACAGGCAATTATTTCATAAGCCCCAAACAGCCGGCTGCAGCAGTGCACGACTCCCACCATCCCAGAGATGTGCCCACCTCACCCATAAACAATAGCGGCTTCAGTTGTGGCATTTGCGAACGAAATGATTTTCGCACCGAGTCCGAAGTACACTCTCATCGCAAAATTGTACACAATCTAAAGACCGGAGTCAGTCTGAAATGCGCCTATTGTTCGGGCAATTTTAAATCACGCAGTGAACTCGAACATCATATGAAAACGTGTCACAATTCCACCGGCAAGCACAAGTGCTTGATATGTGATGAAATCTTTCCCTCGCCCGCTATACTGGCCGAACATAAGCTACAACACTCCAAGGTGGGACAGTCGGGAAGATGTTCACACTGCTCCAAAGCACTGGCCGATGTCAGTACCTTCAAAGTTCATTTGGGCGAACACAATACGGAAGGACAAATGCCAGTACAGTGCATATGCTGTCGCCAGTCATTACATTCAGAATTTGAGATTGGGCTGCATGCAAAATTCCATGTTATCAACCCCACTGTGCAGGAGAACGTATGTGCTCTTTGCTTAGAACCCATCACCCATTTAGCCACTGAGGCCAAAGTTTGCGAAAAATGCTGTCGCAAACACAATCTCAATGCCAAGTTCAAGTCACGCGAACACTTCGAACGCCCTGCCATCGAATTGAAGCAGTACATTGAAAATCGCTGTAATCTGTGCAAAATGATTTTGCCGCATGCCCAAAAACTACAAGAACACTTGGTCGAACATACCTTTGCCGGCTGTGAGGAGCGTGGCTTCAACTGCTACATATGTTCGGCCGTTTTTACAGCTCCTACGGGCCTCCTCAATCACATGCTAGAGCATGGCACTAATGCTAAGCCCTACGATTGCAATCTGTGTCCAGAAAAGTTTTATTTCCGCGCTGAGTTGGACCATCATCTAATTGATCATGAGGTGCGAGCAGCAGCACCGGCAGCAATAAAAAGTGAGCAGGAGCTATCAACAAAAAAAGAAGAGACTTTGAATAGCATGAAATCGGAGAAAGCGGCAGCAGGTTTAAACGCCGTAAAGCAGGAGGTAATGGAACATGATCATAATTGCAACAATGCTGAAGAGGATGAGTACATTGAAGTGGAAAAGGTACacgaaaataataacaacaacaccagcagcagcaacaacatgGGCAGTCAAGTGAATGATGATACAGTGTCGCATAAAAGTGAACACACTAGAAATGAATCCAATGAACAAGACAGAGATGAAAaagcataa
Protein Sequence: MYSTHTSSSYSPSISDGNITPNSLHHHHLHHHHQHLAVPPHLSFPNSAAYEEDTTSLALQTQRLPRQKTNGTLDGAEYEDNANDNDNDHNNERMHKNDAKLCEDNVTIAADNKTNANISESGEEHHQQQHHQPHNHHHHQLKRHGRHHRYAEHALRMPSKLRKIDRDSTVGGNNGVNAAGVVAAAADGVGVGVTANAVKFDKLTGDGIKSGNNAASADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQALNYSPRSTGSASSTGSLQKRRYGLAAAAEQSPNRLEYSKRGRSSSTNMLKCTFCSKSDFTAVEQLNTHLQTQHEKELAHSMTPPSSTNHHQALENHNAFQLSCEYCTMKFANIAAMFQHMRSAHLDRLTSPNSYFEHFNRLAASGTFSPRLLTGPPLRSAVSAEENIIKEENNLSSPKSVDAANRQSEDEPTDLSQNNRRSMTPANTPQNSPQDQLPANEKPGLFFCNQCNAGLPDFESFRNHLKTHIAQGLNLVCHHCGMLLREHSEYERHVISHFLITNSEYNCTGNCQKSFGKPEELQKHLVDQHAITMFKCSLCSEMFESKVAIQVHFACTHSAETKIFRCSACMDVFRSESDFNMHVKTRHQAVNNNVAPVNSLQCMFCRTICSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTQHGGLERPPPPPPPHPPPPPPASTVQQAIAEEHTSPVAMPNAISPMNSLYVNALFGKTPLMPLAPQNNNNSILDYNMAFASHINKGLFPNANPNKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVMEMYQQQQQQHQQQQQQQHHPHDSNKATGNYFISPKQPAAAVHDSHHPRDVPTSPINNSGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKALADVSTFKVHLGEHNTEGQMPVQCICCRQSLHSEFEIGLHAKFHVINPTVQENVCALCLEPITHLATEAKVCEKCCRKHNLNAKFKSREHFERPAIELKQYIENRCNLCKMILPHAQKLQEHLVEHTFAGCEERGFNCYICSAVFTAPTGLLNHMLEHGTNAKPYDCNLCPEKFYFRAELDHHLIDHEVRAAAPAAIKSEQELSTKKEETLNSMKSEKAAAGLNAVKQEVMEHDHNCNNAEEDEYIEVEKVHENNNNNTSSSNNMGSQVNDDTVSHKSEHTRNESNEQDRDEKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01237143;
90% Identity: iTF_01399883;
80% Identity: -