Cimp105338.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- L
- Assembly
- GCA_963682025.1
- Location
- OY821521.1:136634256-136655182[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.2e-06 0.0028 20.7 1.7 1 23 198 220 198 220 0.98 2 19 0.76 2.3e+02 5.2 5.8 1 23 226 248 226 248 0.98 3 19 4e-07 0.00012 25.0 3.1 1 23 254 276 254 276 0.99 4 19 1.8e-05 0.0056 19.8 0.3 1 23 282 304 282 304 0.98 5 19 1.8 5.5e+02 4.0 1.1 2 23 369 392 368 392 0.88 6 19 0.0055 1.7 12.0 0.2 3 23 420 441 418 441 0.97 7 19 0.048 15 9.0 0.7 1 23 542 564 542 564 0.97 8 19 0.24 73 6.8 2.7 2 23 572 593 571 593 0.96 9 19 0.0024 0.73 13.1 1.3 1 23 601 625 601 625 0.92 10 19 0.072 22 8.5 0.1 1 19 630 648 630 650 0.93 11 19 1.3 4e+02 4.5 0.4 3 23 662 683 660 683 0.84 12 19 0.0024 0.73 13.1 2.9 1 23 722 744 722 745 0.96 13 19 5.2 1.6e+03 2.6 0.9 1 23 928 952 928 952 0.89 14 19 0.0014 0.42 13.8 4.8 2 23 961 983 960 983 0.97 15 19 0.2 62 7.0 0.1 1 23 989 1011 989 1011 0.92 16 19 0.026 7.8 9.9 0.9 2 23 1019 1040 1019 1040 0.96 17 19 0.78 2.4e+02 5.2 0.5 2 23 1131 1152 1131 1152 0.94 18 19 0.012 3.8 10.9 0.1 1 23 1162 1184 1162 1184 0.97 19 19 0.074 23 8.4 0.6 1 23 1191 1213 1191 1213 0.95
Sequence Information
- Coding Sequence
- atgtacTCCACACACACATCATCAAGTTATTCACCTTCAATATCAGATGGTACCTTAACACCAAATTCTTTACATCATCAACATTTAACAGTACCATCATCACATTTACCATTTCCCAATGCTGCGGCTGCTTATGACGAAGAATCGTTGGCATTACAGACGCAACGTCTACAAAGACAAAAAACTAATGGCATTATGGATGGCGCTGACTATGAAGACGACCACGAAAGGATTCATAAAAATGACACAAAACTGTGTGAAGACAATGTCGCAGACAATAACAAAACAATCAAAAATGATACCGAAACTGGTGAAGAACATCGTCAACAACAACATCAtgagcagcagcagcagcagcaacaactaaAACGTCATGGTCGTCATCATCGTTATGCTGAACATGCCTTAAGAATTCCTTCAAAATTACGAAAAATCGATAGGGATTCATCGTTGCTGggtagtggtggtggtggtggtgccaGTGCTGTCGGCGGCGGTGTTGGTAGTGGTGTAAAAAATGCAGTCAAGTTTGATAAGTTGACAGGAGATGGTATTAAAAGTGGTAACAATGCTGCTAGTGCCGACGGATCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGTCTTGGTTATTTGAAAAAACATGAACAGAGTCATGCCGAACACTTGCCTTTTAAGTGTGACTACTGTGCTCGTCTGTTTAAGCACAAAAGATCTCGGGACCGTCACACAAAATTGCATACGGGAGATAGACGTTATCGCTGTCCTCATTGTGAAGCTGCATTTTCCAGAAGTGATCACTTAAAGATTCATATGAAAACCCATGATAACCAAAAACCATTTCAATGCACTATTTGCAATCGTGGCTACAATACAGCCGCTGCCTTAACATCGCATATGCAAAATCATAAAAAGCAAGCTGCTCTTTTGGCTGCTGGTGGCAATCCACAAGCTATAAATTATAGCCCCCGATCTACTGGATCAGCATCAAGCAATGGTAGTTTACAAAAGCGACGTTACGCTTTAGCTGGAGCACCCGAACCAAGTCCCAATAGAATTGATTTTAACAAACGTGGCAGATCTTCCTCGTCAAATATGCTTAAATGTACATTCTGTTCGAAATCAGATTTTACCACAATGGAACAATTGAATACCCACCTTCAAGCTCAGCATGAAAAAGAATTGGCCCATTCTATGACGCCACCATCAACAAATAACCAACAGGCAGGGGAAAATCACAATTTTCAAATGGCTTGTGAATATTGCACTATGAAGTTTCCCAATATACCAACTATGTTCCAGCATATGCGTACAGCTCATTTGGATCGTTTACCCAGTCCAAATGCATACTTTGAACACTTCAATCGTTTAGCAGCTACGGGTACATTTAGTCCTCGTTTATTGACGGGAACACCATTAAGAAGTGTGGCTAGTGCAGAAGAAAATAACATCAAAGAAGAACATAATTTGTCAAGCCCCAAATCAATGGAGACCAATGTTAGACAAAGTGAAGATGAACCAACAGATTTGAGTCAGAATAATCGGAGATCAATAACACCTACTAACACTTCCCAAAGCTCGCCACAGGAAAACATGAATGTCGTTGAAAAACCCGGTGTTTTCTTTTGCAATCAATGCAATGCCGGTTTACCTGATTTCGAATCATTCCGCAATCATTTGAAAACTCATATAGCTCAAGGTCTCAATTTAGTGTGTCACCATTGTGGCCTGTTATTAAGGGAACATTCCGAGTATGAAAGACATGTTATATCACATTTTCTTATTACAAACTCAGAATACAACTGTGGAGGAACTTGCCAAAAGTCTTTTGTAAAGCAAGAGGAATTACACAAGCATCTGTTGGATCAGCATGCCGTCACCATGTTTAAGTGTAGTTTATGCAATGAAATGTTCGAATCCAAAGTAGCCATTCAGGTTCACTTTGCTTGTACTCATTCGGCAGAGACTAAAATTCTAAGATGTTCTGCTTGTATGGATGTCTTTCGATCAGAAAGTGACTTTAATATCCATGTGAAAACACGTCATCAAGCAGTTAACAATAATCCAGCGCCAGTAAATTCATTGCAATGTATGTTTTGCCGCACTGTCTGTTCCTCTGACTTTGAAATGCAATTTCATTTGGCAGCTCATGCCCGACAATTCCGTTGCCCTTCATGTCCGGAAACTTTCCACGTGGAATTTTTATTAGATCGTCATATGCAAACCCATCATGGTGGCTTAGAACGACCACCGCCGCCACCACCATCACAGCAATTAGTACAAAAGGAGTCATTTGAGGATCATTCGTCACCTGCATCCAATCCAAGTGCTATCTCGCCCATGAACTCATTGTATGTAAATGCCCTCTTCGGTAAGGCCCCCCTAATGCCGTTGACTCCacagaataacaacaacagcatatTAGACTATAATATGGCTTTTGCGTCCCATTTGAATAAGGGTCTATTTCCGAATACAGCTGCCAACAAATTCTATAATCCTCTACAGATTGACACGAGCGCCATGAAACATTCTGCTCTAATGTATGGTTTATCGCAAAGATATTTCGATACAAATCGTACTGTTATGGAAATGTATCAAcatcaacaacagcagcaacatcaacaacaacatcaacaacaacaacaacatcatcaggAGAATAGCAAAACTGCTGGTAACTTTTTCATTAGCCCAAAACAGCCAAACACACCCCATTTACAAAATGATTCGCACCTACGCACTGATCTACCGACATCGCCACACAACACCACCGGTTTCAGTTGCGGCATCTGTGAACGTAATGATTTTCGCACCGAATCTGAAGTTCACTCCCATCGCAAGATCGTACATAACCTCAAGACAGGTGTAAGCTTGAAGTGCGCCTATTGCTCGGGTAACTTTAAATCACGCAGCGAACTAGAACATCATATGAAAACATGTCATAATTCAACGGGCAAGCATAAATGTTTAATATGTGATGAAATATTTCCATCACCTGCTATTTTGGCCGAACATAAGCTGCAGCACTCTAAGGTTGGACAATCTGGTAGATGTTCGCATTGTTCTAAAACTCTGGCTGATATAAGTGCCTATAAGGCTCATTTATCGGAGCACAATACCGAGGGTCAAATGCCGGTCCAATGCATATGTTGCCGACAATCTTTACATTCCGAATTTGAGATTGGTTTACATGCaaaatttcatattaaaatttcaaatgtttccGAAAATGCATGTGCCCTCTGCTTAGAGCCCATAACAAATGCACCCACAGAGGCCAAAGTATGTGAGAAATGCTGCCGCAAACATAATCTCAATACAAAATTTAAGCAACGTGATAATTTTGAACGTCCCACCGAATTGCGGCAACAATATGTTGAAAATCGTTGTAATTTGTGTAAAATGATTTTGCCACATCCACAAAAACTTCAGGAACATTTGGTTGAGCACACCTTCGCTGGCTGTGAAGATCGTGGTTTTAATTGTTACATCTGTTCGGCTGTCTTTACGGCAACCAGCGGTCTGCTCAATCATATGTTGGAACATGGCATAAATTCAAAACCCTACGATTGCAATCTATGTCCTGAGAAATATTATTTTCGTGCTGAATTGGATCACCATCTGATTGATCATGATTTGAGAGAAACGCCAATTCCTGCTGTAAAAAATGAACAGGAACATTCAGCTAGTAAAgaggaaaatatagagaatagcAGTACGGAATTAAGAACCCAACAAAAACCAATAATAATATTGAATGAAGTGAAAAAAGAGATTATTGAAACTGACCATAATTCTAATATTGCTGAGGAAGATGAATATATTGAGGTGGAAAAGATCAatgaaaataacaacaacactCAGTTACAAAATTTGCCGACAGAAAAAGAAGAATCAAAGGATTCTAGTGAAATGTCCAGAGAGGAAAACATATTATAA
- Protein Sequence
- MYSTHTSSSYSPSISDGTLTPNSLHHQHLTVPSSHLPFPNAAAAYDEESLALQTQRLQRQKTNGIMDGADYEDDHERIHKNDTKLCEDNVADNNKTIKNDTETGEEHRQQQHHEQQQQQQQLKRHGRHHRYAEHALRIPSKLRKIDRDSSLLGSGGGGGASAVGGGVGSGVKNAVKFDKLTGDGIKSGNNAASADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQAINYSPRSTGSASSNGSLQKRRYALAGAPEPSPNRIDFNKRGRSSSSNMLKCTFCSKSDFTTMEQLNTHLQAQHEKELAHSMTPPSTNNQQAGENHNFQMACEYCTMKFPNIPTMFQHMRTAHLDRLPSPNAYFEHFNRLAATGTFSPRLLTGTPLRSVASAEENNIKEEHNLSSPKSMETNVRQSEDEPTDLSQNNRRSITPTNTSQSSPQENMNVVEKPGVFFCNQCNAGLPDFESFRNHLKTHIAQGLNLVCHHCGLLLREHSEYERHVISHFLITNSEYNCGGTCQKSFVKQEELHKHLLDQHAVTMFKCSLCNEMFESKVAIQVHFACTHSAETKILRCSACMDVFRSESDFNIHVKTRHQAVNNNPAPVNSLQCMFCRTVCSSDFEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGGLERPPPPPPSQQLVQKESFEDHSSPASNPSAISPMNSLYVNALFGKAPLMPLTPQNNNNSILDYNMAFASHLNKGLFPNTAANKFYNPLQIDTSAMKHSALMYGLSQRYFDTNRTVMEMYQHQQQQQHQQQHQQQQQHHQENSKTAGNFFISPKQPNTPHLQNDSHLRTDLPTSPHNTTGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKTLADISAYKAHLSEHNTEGQMPVQCICCRQSLHSEFEIGLHAKFHIKISNVSENACALCLEPITNAPTEAKVCEKCCRKHNLNTKFKQRDNFERPTELRQQYVENRCNLCKMILPHPQKLQEHLVEHTFAGCEDRGFNCYICSAVFTATSGLLNHMLEHGINSKPYDCNLCPEKYYFRAELDHHLIDHDLRETPIPAVKNEQEHSASKEENIENSSTELRTQQKPIIILNEVKKEIIETDHNSNIAEEDEYIEVEKINENNNNTQLQNLPTEKEESKDSSEMSREENIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237143;
- 90% Identity
- -
- 80% Identity
- -