Basic Information

Insect: Leucophora obtusa
Gene Symbol: L_1
Assembly: GCA_949987735.1
Location: OX465299.1:139984711-139994179[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.87 92 5.5 5.7 1 23 26 48 26 48 0.98

2 18 4.7e-07 5e-05 25.2 3.1 1 23 54 76 54 76 0.99

3 18 2.2e-05 0.0023 20.0 0.3 1 23 82 104 82 104 0.98

4 18 0.43 45 6.5 1.4 2 23 169 192 168 192 0.91

5 18 0.0024 0.25 13.6 0.1 3 23 223 244 221 244 0.97

6 18 0.058 6.1 9.2 0.7 1 23 345 367 345 367 0.97

7 18 0.28 30 7.1 2.7 2 23 375 396 374 396 0.96

8 18 0.00063 0.066 15.4 0.2 1 23 404 428 404 428 0.93

9 18 0.34 36 6.8 0.0 1 19 433 451 433 453 0.94

10 18 5.9 6.3e+02 2.9 0.5 3 23 465 486 463 486 0.84

11 18 0.0028 0.3 13.4 2.9 1 23 525 547 525 548 0.96

12 18 6.2 6.5e+02 2.9 0.9 1 23 722 746 722 746 0.89

13 18 0.0017 0.18 14.1 4.8 2 23 755 777 754 777 0.97

14 18 0.24 25 7.3 0.1 1 23 783 805 783 805 0.92

15 18 0.12 12 8.3 0.7 2 23 813 834 813 834 0.96

16 18 0.93 99 5.4 0.5 2 23 929 950 929 950 0.94

17 18 0.0034 0.36 13.1 0.0 1 23 960 982 960 982 0.97

18 18 0.088 9.4 8.7 0.6 1 23 989 1011 989 1011 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.87	92	5.5	5.7	1	23	26	48	26	48	0.98
2	18	4.7e-07	5e-05	25.2	3.1	1	23	54	76	54	76	0.99
3	18	2.2e-05	0.0023	20.0	0.3	1	23	82	104	82	104	0.98
4	18	0.43	45	6.5	1.4	2	23	169	192	168	192	0.91
5	18	0.0024	0.25	13.6	0.1	3	23	223	244	221	244	0.97
6	18	0.058	6.1	9.2	0.7	1	23	345	367	345	367	0.97
7	18	0.28	30	7.1	2.7	2	23	375	396	374	396	0.96
8	18	0.00063	0.066	15.4	0.2	1	23	404	428	404	428	0.93
9	18	0.34	36	6.8	0.0	1	19	433	451	433	453	0.94
10	18	5.9	6.3e+02	2.9	0.5	3	23	465	486	463	486	0.84
11	18	0.0028	0.3	13.4	2.9	1	23	525	547	525	548	0.96
12	18	6.2	6.5e+02	2.9	0.9	1	23	722	746	722	746	0.89
13	18	0.0017	0.18	14.1	4.8	2	23	755	777	754	777	0.97
14	18	0.24	25	7.3	0.1	1	23	783	805	783	805	0.92
15	18	0.12	12	8.3	0.7	2	23	813	834	813	834	0.96
16	18	0.93	99	5.4	0.5	2	23	929	950	929	950	0.94
17	18	0.0034	0.36	13.1	0.0	1	23	960	982	960	982	0.97
18	18	0.088	9.4	8.7	0.6	1	23	989	1011	989	1011	0.95

Sequence Information

Coding Sequence: ATGTGGCAACCCTACTATAAAATTTTACAGTACTTAACCTGTCCCTGTATCCACAGTCATGCCGAACACTTGCCCTTTAAATGTGAATACTGTGCTCGTCTCTTCAAACACAAAAGATCTCGGGATCGTCATACTAAATTGCATACAGGAGATCGTCGCTATCGTTGTCCACATTGCGAGGCAGCATTTTCTAGAAGTGATCACCTAAAGATTCATATGAAAACCCACGATAACCAAAAACCATTTCAATGTACCATTTGTAATCGCGGCTATAATACGGCAGCCGCTTTAACCTCTCACATGCAAAATCATAAAAAGCAAGCTGCTCTTTTGGCTGCTGGCGGTAATCCTCAAGCGTTAAACTACAGTCCTCGTTCTACGGGCTCAGCTTCCAGTAATGGTAGTTTGCAAAAACGACGTTACGGTTTAGCAGGAGCAACCGAGCAAAGTTCCAATAGAATGGATTATAATAAACGTGGTCGATGTTCTTCAACAAATATGTTAAAATGTACATTTTGCTCAAAGTCGGATTTTACAACTGTAGAGCAATTGAATAATCATCTACAAACCCAACATGAAAAAGAATTGGCTCATTCTATGACACCACCTTCAACAAATGCTAATAATCCTCCTCCCGCGGTGGATACTCATAATTTCCATATGGCTTGTGAATATTGTACTATGAAATTTCCAAATTTACCAGCCATGTTTCAACATATGCGAACAGCACATTTAGATCGTTTAACTAGTCCAAATTCATATTTTGAACATTTCAATCGTTTAGCTGCCACAGGTACGTTCAGCCCCCGTTTGTTAATAGGTCCTCCACTGAGAAGCTCAGCTAGTGCAGAAGAGAATAGCATAAAAGAGGAACATAATTTATCTAGCCCCAAGTCTATGGATACCAACCCAAGACAAACCGAAGATGAACCAACAGATTTAAGTCAAAATAATCGTAGATCTTTAACTCCTACCAATACTCCTCAAAATTCTCCACAACAGAATTTAAATGTGGTCGAAAAACCTGGTGTTTTCTTTTGTAATCAATGTAATGCTGGTCTACCCGACTTTGAATCTTTTCGCAATCACTTAAAGACTCATCTAGTCCAGGGGCTAAATTTGGTATGCCATCATTGTGGTCTACTGCTTAGAGAACATTCCGAATATGAAAGACATGTTATATCACATTTTCTTATAACTAATTCTGAATATAATTGTGCGGGAAATTGTCAAAAGTCTTTTGCGAAACCAGAAGAATTACAAAAGCATCTTTTGGAACAACATGCTGCAACAATGTATAAATGTGGTTTATGTAGTGAAATGTTTGACTCCAAAGTTGCCATACAAGTTCATTTTGCTTGTACTCATTCGGCTGAAACAAAAATCCTAAGATGTTCGGCTTGTATGGATGTGTTTCGTACGGAAAATGAGTTTAACATTCATGTCAAAACACGTCATCAGGCTGTAAATAATAATCAAGCACCTGTGAATTCCTTACAGTGTATGTTTTGTCGTACAGTATGTTCTTCTGACTTGGAAATGCAATTTCACTTAGCAGCTCATGCAAGACAATTTCGTTGTCCTTCTTGTCCGGAAACTTTCCATGTGGAATTTTTACTAGATCGTCACATGCAAACACATCATGGTGGTTTAGATAGGCCAGCACCACCGCCATCACAGCAAATAATACAAAAGGAGCCATTTGAAGAACATTCATCCCCTGTACCAAATGCAAATGCTATCTCACCCATGAACTCTTTATATGTAAATGCCCTATTTGGTAAGGCACCATTAATGCCTTTGGCACCACAAAATAATAACAATAGTATTATAGATTATAATATGGCTTTTGCTTCACATTTAAATAAAGGCCTTTTCCCTAATACCAACGCCAATAAATTCTATAATCCTTTACAAATTGATACAAATGCTATGAAACATTCAGCTCTTATGTATGGGCTATCACAAAGATATTTTGATACAAATCGTACGGTAATGGAAATGtatcaacaacaacaacagcagcagcaacaacatCATCAGGAGAATAACAAACAAACTCCCGGAAACTATTTTATAAGTCCAAAACAACCAACATCACATTTACAAAATGATTCTCATACACGTAATGATTTACCCACCTCACCACAAAACAATGCCGGTTTCAGTTGTGGCATATGTGAACGTAATGATTTTCGCACCGAATCTGAAGTTCATTCACATCGCAAGATTGTACATAATCTCAAGACGGGTGTTAGTTTAAAATGTGCCTATTGTTCGGGTAATTTTAAATCACGCAGTGAATTGGAACATCACATGAAGACGTGTCATAATTCTACTGGTAAACATAAATGTTTAATTTGTGATGAAATCTTTCCCTCACCAGCCATATTGGCCGAACATAAGTTGCAACATTCTAAGGTGGGACAATCGGGAAGATGTTCTCATTGCTCGAAAATTCTGGCTGATGTAAGCGCCTTTAAGATTCATTTATCGGAACATAATACGGAGGGTCAAATGCCAGTGCAATGTATATGCTGTCGTCAATCTTTGCACTCTGAATTTGAGATTGGTTTACATGCAAAATTCCATGTTAAAAATTCGAATGTTACAGAAAATGTATGTGCTCTTTGTTTGGAACCCATTACAAATTCACCCACAGAGGCCAAAGTTTGTGAAAAATGCTGCCGTAAACATAACCTTAATACTAAATTTAAACAACACCAACAACCACGTGATCATTTTGAACGTCCCGTTGAAATGAGACAACAATATATAGAAAATCGTTGTAATCTTTGTAAAATGATCTTGCCACATCCACAAAAACTACAAGAACATTTGGTCGAGCATACATTTGCTGGCTGTGAAGATCGGGGTTTTAATTGTTACATATGTTCCGCAGTCTTTACTGCACCCAGTGGTTTACTTAATCATATGTTAGAACATGGGGTCAATTCAAAACCATATGATTGTAATTTATGTCCTGAAAAATACTATTTTCGTGCTGAATTGGATCACCATTTAATTGATCATGATTTAAGAGAAACGTCGTCGGCAGCTCCTGTAGTATCAGCAGCAATTAAAAATGAGCAGGAACATAACGCCAGTAAAGaagaaaatttagaaaatctcAATACTGAATTGAGATCACAAGAAAAATCCATTACCTTAAATGAAGTTAAACAGGAGATTATAGAAACTGATCATAATTCCAATATAGCAGAGGAAGATGAATATATTGAGGTGGAAAAAGtaaatgaaaataataataatactCAGTTACAATCAGTAACTTCCGAAAAAGGTGAATCTAACAATTCTATGGAAAGCATGAGAGATGAGAAGACATTATAA
Protein Sequence: MWQPYYKILQYLTCPCIHSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQALNYSPRSTGSASSNGSLQKRRYGLAGATEQSSNRMDYNKRGRCSSTNMLKCTFCSKSDFTTVEQLNNHLQTQHEKELAHSMTPPSTNANNPPPAVDTHNFHMACEYCTMKFPNLPAMFQHMRTAHLDRLTSPNSYFEHFNRLAATGTFSPRLLIGPPLRSSASAEENSIKEEHNLSSPKSMDTNPRQTEDEPTDLSQNNRRSLTPTNTPQNSPQQNLNVVEKPGVFFCNQCNAGLPDFESFRNHLKTHLVQGLNLVCHHCGLLLREHSEYERHVISHFLITNSEYNCAGNCQKSFAKPEELQKHLLEQHAATMYKCGLCSEMFDSKVAIQVHFACTHSAETKILRCSACMDVFRTENEFNIHVKTRHQAVNNNQAPVNSLQCMFCRTVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGGLDRPAPPPSQQIIQKEPFEEHSSPVPNANAISPMNSLYVNALFGKAPLMPLAPQNNNNSIIDYNMAFASHLNKGLFPNTNANKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVMEMYQQQQQQQQQHHQENNKQTPGNYFISPKQPTSHLQNDSHTRNDLPTSPQNNAGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKILADVSAFKIHLSEHNTEGQMPVQCICCRQSLHSEFEIGLHAKFHVKNSNVTENVCALCLEPITNSPTEAKVCEKCCRKHNLNTKFKQHQQPRDHFERPVEMRQQYIENRCNLCKMILPHPQKLQEHLVEHTFAGCEDRGFNCYICSAVFTAPSGLLNHMLEHGVNSKPYDCNLCPEKYYFRAELDHHLIDHDLRETSSAAPVVSAAIKNEQEHNASKEENLENLNTELRSQEKSITLNEVKQEIIETDHNSNIAEEDEYIEVEKVNENNNNTQLQSVTSEKGESNNSMESMRDEKTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01237143;
90% Identity: iTF_00717014;
80% Identity: -