Mpha014872.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monomorium pharaonis
Gene Symbol
RREB1
Assembly
GCA_013373865.1
Location
CM023795.1:1870375-1894396[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 4.7e-05 0.0075 17.4 1.3 1 23 41 63 41 63 0.97
2 14 0.00014 0.022 15.9 0.1 1 23 77 99 77 99 0.98
3 14 4.6e-05 0.0075 17.4 4.2 1 21 105 125 105 128 0.95
4 14 0.0005 0.081 14.2 0.0 3 23 226 247 224 247 0.96
5 14 0.0046 0.75 11.1 3.7 2 23 253 275 253 275 0.96
6 14 0.14 23 6.5 0.2 1 23 502 524 502 524 0.96
7 14 1.8e-05 0.0029 18.7 0.2 1 23 533 555 533 555 0.98
8 14 0.0034 0.55 11.6 3.1 1 23 561 584 561 584 0.96
9 14 0.00039 0.062 14.5 3.1 1 23 953 976 953 976 0.97
10 14 0.00057 0.092 14.0 0.1 2 23 1245 1266 1244 1266 0.97
11 14 0.035 5.7 8.4 3.2 1 23 1340 1364 1340 1364 0.96
12 14 2.5 4e+02 2.6 2.1 1 23 1446 1469 1446 1469 0.95
13 14 0.009 1.5 10.2 0.4 2 23 1522 1543 1521 1543 0.94
14 14 0.0021 0.35 12.2 5.2 1 23 1549 1571 1549 1571 0.98

Sequence Information

Coding Sequence
ATGGATTACTCGAAGAAAGTGACTGGATTACAGAATGGACCTGACCAGGAACAGGAAAACGAATCACAAATTAATGCTGCATCACCATCATCAAGCGTTGAGCTGTCGGAGAATGGCACGCATCCATGCCCAACATGCCCATCGGTATTCACTAGTTCCCACGAACTGACGAATCACCTGCGCGGTCACAACTCACCTCGCAGCACGGACTGCAGCGGCGAAGAGGATTACAGCTGCGGCGTATGCAATAAGGTGCTCAGCTCGGCGAGCTCGTTGGACCGGCACGTGCTGGTGCACTCGGGTGAGCGGCCGTTCAAGTGCAAGTACTGCGATATGTCGTTCACGACGAACGGGAATATGAACCGGCACGTAAGGTGTACCCATCGGATGGTGTCGCCGAACAGCTGCACGGATTCGGAGGGCAGCAGCGGCTCGGAGAGACCTGCGGCGACGAGCCAGGATGAGTACAACAACAACGAGATAGCCAGGCGCAACTCGCCGGACCTGATCGATGAACAGCAACCGTCGCCCAGCAACAACCGCGTGAACAAACGGAAATGTTCGGACGAGGACGTCAGCGAGGACATAGACGAGCAAAGAAGACACAAGATCCTCTTAAACAGCACAAAGATGATCAGGTGTCGACCAGATGACGAGATGACGAAGGTTTTCGGTTGTGCAATCTGCGGCCAGGATTTTGCGAGCAGCGCTACTCTAGAGTCTCATATGGAACGCGTGCATCCAGGCTCCCCGGCCACGTGCGAGACTTGCAATCAGTCGTTCAAAAATCATCGCGCGCTGAACCTTCATCGTTCAATGAGACATTACAAAAAGAACCCGGAAGGTAGCAATAGTCGTAGCTTGCGCAACACCGTAGACGGTTTCAGGGATCTGACGTTCATCGACTTTTCATCCATCAAGTTTCCGACGATCGCCCGGGCGATGTGCGAGCGTGAGCTGCACCGGCCGGCCTCCGGCGAGGCCAACAGGTTCCAGTGTATGAAGTGCCTACACGCATTTCCTTGCAGGCAAGCTCAGCTGGCGCATGAGAAGGAATGCAAAGGTCCCTACAAGAACAAGAGAAACAGTAATgacaacaacaacaataatGATATCAGTACCAACAACAATCTCGAGGCGGAACTGGAGGATCCAACTCCGCAGCCCGACGATTCCAAGACTAAGCGCGAGATGTTCTTTGCTGTGCTGGATCTGCAGAATAAGTCTTTGGCGCACGAGACAAAAGAGTCGCGGGAACCGAACGAGATCAGAGAGTCGAAGGAGACCAAGGATCTAGCGGATATCCCGAGCATTCTATCCGTCAGTCTGAATGGACTGCAGACCTTTCCTCGGTCGGACGCGAGCACGCCCGAGAACAACATCAAGTTTAATCCAAATATCGGCTCTTCAGGCTCTTCAGGCACTTGTTCGTCCGAGTACAATGAGGAGGAGGCACAAGACGCCTTCACCGCGGAATTCCGGAAGATGAAGCTGAAAGGGGAATTTCCGTGTAGACTGTGCACATCCGTATTCCCCAATTTACGGGCACTGAAGGGACATAATCGCGCACATATGAACGTAGAACCAGGCATGGCGTATCCGTGTAATATGTGCCCGTACACCAGCACCGATAAAGGAGCCCTGATGAAGCACCTAAGATCGCATAACGGTGACCGTCCGTTCGAGTGTTCCCTTTGCAATTACGCGTTCACCACCAAAGCGAATTGCGAGAGGCACGTGAAGAATCGTCACGGGATGATTAGCAAGGAAGATGTTAAGAACGCACTGATCTATCATCCGAGTGAGGATTCGACAAATGATAATATCGAAAGGAGTTCGCCCAGAGTCAGGGAGGATGTGCGGAAGACGCTTATTTATCCGAACGAACGCGAGGAGATTCCTCAACAGCAACAGATACATTATCCGTCTCTGGCAATGGATTGTAATCCTGGACCATCGACCGTCCACGCCGAGATGCTAATGAATCGATACGATAAGTCAGACGCGTTCACCAGAATAAAGATGCAGGCTCTCAATCTCGTAAAAAGAAACGCTGACGAAGCAAACCTGTCTCACGATCTAATCGTAAAGCCGAATTATTCGAAAATCGACGATGACGCTGAATCGCGATCGTCAGACGGCAGCGTGTCTCTAGTCAGTGATACCAAAACAGATATACACCAAAGAATTCAAGCTAGTCCGATGAACCTGACGAAACCCTTAACGAGCTCCGGGTTGAGCTCGGGCGAGGACGGTCCATTGGATCTGTCCATGGATGTATTGGATCTGAGCAGGAAGcggaaaagagaaaacgagGACTCTAGCTTGCAAGAGGACAAGCGATTTAAAAACAATCAACAAGAATTATACGCCACAAACCCAGCGTTGCTGCTAACCCAAGCCCTACTGAACCGAGCACGCGAGAGCTCACCGACGACGTCATTAGAGACTCTTTACGCGAATACTATCTATCGTAATTTTGGCACGTTAACCAGTGCCAGCATGATACCACCGTATTTTCTTGGCCCTCACATGTTCACCCAGGAATTAGCGAAGGGCAGGCTGCAAAAAGAGCTGGTGAGAGGGTTGCAATTGACCGGCGGCGGCACTCTTTCGGTTGATCCGTCAATGCCCAGCACTAGCTACGCGGCGTATACGCAAACGAGGGACACCCCGCAAACCTCGAGTGAGCAGAATGCCTACGCGAACTTGATGAATGCGCAGATGACAAACCAGAGCGCGCCGAGTCGTGAAAAAGCGGACAGTATCTCATCGAACGATCCTGTGAAGATGGTACTCAAGAACGGGGTATTGATCCCTAAGCAAAAGCAGCGCAGATATCGAACTGAGAGACCTTTCACCTGCGAGCACTGCACGGCGAGATTCACTCTGAGGAGCAACATGGAACGACATATTAAACAACAGCATCCACAATATTGGAGTCAAAGACCTCGTGGCGGACACTCAACTAGAGGCAGACCGCCCTCGAGTCATCCGACTATGGTACAGAATACTGGTCCATCGACCTCGCAGGTGACTCAACCGTATTCGAGCATTCTTCCGAACATTGACACGCCAGTGGTCACGCCGACGGATTACGGTACACATCCTATCTCGGACCAAGTGAAATACGCGATTCTGGCGCAACAGCTGAAAGCCAATAAAATAGAAGACAATGATTCGGAGGATGAGATGGTGATAGACGAGGAGTCGGCCGATCGGGACGCTCAGGAGTCGCAAGCTCAACGTGAGCCAAGCACGAGTCTGCTAAGAGATCAGTTGGAGAACAACGAGGGTGTCAAAGATATCATCGTAAAGACGGAAGCGGTGCCTGCGGAGGAAACCTCGGAGGAGACTCACGACGGTGAACAGGCCGCAAGAGATAACGACGACAATTCGGAAGAATCCGCGACGATTGAAAACAAGCCGATACGCGGTGAGGAAACCACCACGACCGAATCCGCCAGCAAAGAGCAGGGTAAGCTCGAGGACGGAGCGCCCGATCTCGCGAGCGTCTCGAAGCTCTTGGACAACGCGTCTCAGCAATATCAGCAATTCCAGCCGCAATACCTGAGTGACGAGGAGGGTCCCGTCGCGTCGACCAGTGGCAACAATTCCGGCAGCGAGAAGTCCGATTCGATGAACTCTTTGAACTCCGGAAACGATTCCTCGCCAAacaagaagaggaaaaaaaagaagaaatccGCGTACTCGATGGCGCCGAATCGTGTCGTGTGCCCATATTGCGAACGCCAGTTCCCGTGGACCTCGTCTCTGAGACGACACATCCTCACCCATACCGGCCAGAAGCCGTATCAGTGTATTCACTGTTCTCATCATTTCACCACCAAGTCCAACTGCGACCGCCACCTGCTGAGGAAGCACAAGGCGAAGGCAAACAAAATGCGCCGCGCCAGAAATTCATCCTCGCCAGACGCCCAGGTGGTcgccagcagcagcagcagcagtagcaaTGGCAATAACACGTTCTCCATGAGGAACGTGCCCGAGAGGCCGTTCAAATGCCATCAGTGTCCGAGCTCGACGTTCGCCACGTTAGGTAACCTGAAGAAACATCGGTCGAGCAAGCACTCGCGCAAGACCGCGTCCAGGTCGGAGTCTAGCGATCAGCAGAACAGCCCGCCGCAGTGCGCCACGCAGAACGATCAGAGCGACTACGAGAGTCGCTCGTCGAGCATGTCTGACAACGGCATGGAGACCGCGACGTCCGCCCCCGTGGCGGCGAAGCCGACCACCAATGCGTCCCCCTCGATAAACGACGCCACTAGGTCGCGCAAATCACCAAGATTGTCGCCGAGTCCCGGTGACGTACCTTTCAAGTGTTACCTGTGCGACAGCGGTTTCTCGGAACGCCAGGACTGCTTGGACCACATCAAGATGAATCACAAGCGCTCGTACGAGATGCTGAAGGCCAAGGGCGCCCTCGATATGGCATCGATGAACATAGACGCAACCGAGGATCATATGATGACGTCGCAGCAACATCCTAGCGACGGGGAAGAGAAGAAGGGCCGTTTTCCCGATTACAGCAACCGAAAGGTTGTGTGCGCTTTCTGCATGAGACGATTCTGGTCCGCGGAGGATCTCCGACGACACATGAGAACTCACACGGGCGAGAGGCCTTTTGAATGCGACATTTGCACCAGGAAATTCACGCTCAAACACAGTATGCTGCGCCATCGTAAGAAGCACGAGTCGGTAGACTCCGCCATGTACATAGGCAACAGCGGCGATGAGGAGCCGCCCGCGCAGCCGCCGACGATAACCCCCAGGAGTCAACAGCACTCGCCGATTTCCACCAACACCAGCAGGCCCCGCACCCAGGACAGAATCTCCCTGCCGACCGTCGCATCGGTGGCAACGGCGGATGCGGCGCCCTGTGCCCTGATGCGTTACAATCACTACGACAACATGGCCACTCTCACCGGCAGAATGGCGAACGATGGTCCCCAGGGCACCGCTCCCGCACCCCTGCCTTCCCCACCGCTACCTGCGGAGGTCCCCAGCGAAAGCGGAGACAACGATCTAATCTCCAATTTGCTAGGAATACGCGAGAAAGGTTTGCTCGACAAGGTTCTGCTGAGCTCGGCAGACGACGCGGCAAAGTTGCTGGGGGTCAATCATAGCGAGTGA
Protein Sequence
MDYSKKVTGLQNGPDQEQENESQINAASPSSSVELSENGTHPCPTCPSVFTSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCDMSFTTNGNMNRHVRCTHRMVSPNSCTDSEGSSGSERPAATSQDEYNNNEIARRNSPDLIDEQQPSPSNNRVNKRKCSDEDVSEDIDEQRRHKILLNSTKMIRCRPDDEMTKVFGCAICGQDFASSATLESHMERVHPGSPATCETCNQSFKNHRALNLHRSMRHYKKNPEGSNSRSLRNTVDGFRDLTFIDFSSIKFPTIARAMCERELHRPASGEANRFQCMKCLHAFPCRQAQLAHEKECKGPYKNKRNSNDNNNNNDISTNNNLEAELEDPTPQPDDSKTKREMFFAVLDLQNKSLAHETKESREPNEIRESKETKDLADIPSILSVSLNGLQTFPRSDASTPENNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCTSVFPNLRALKGHNRAHMNVEPGMAYPCNMCPYTSTDKGALMKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNDNIERSSPRVREDVRKTLIYPNEREEIPQQQQIHYPSLAMDCNPGPSTVHAEMLMNRYDKSDAFTRIKMQALNLVKRNADEANLSHDLIVKPNYSKIDDDAESRSSDGSVSLVSDTKTDIHQRIQASPMNLTKPLTSSGLSSGEDGPLDLSMDVLDLSRKRKRENEDSSLQEDKRFKNNQQELYATNPALLLTQALLNRARESSPTTSLETLYANTIYRNFGTLTSASMIPPYFLGPHMFTQELAKGRLQKELVRGLQLTGGGTLSVDPSMPSTSYAAYTQTRDTPQTSSEQNAYANLMNAQMTNQSAPSREKADSISSNDPVKMVLKNGVLIPKQKQRRYRTERPFTCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPSSHPTMVQNTGPSTSQVTQPYSSILPNIDTPVVTPTDYGTHPISDQVKYAILAQQLKANKIEDNDSEDEMVIDEESADRDAQESQAQREPSTSLLRDQLENNEGVKDIIVKTEAVPAEETSEETHDGEQAARDNDDNSEESATIENKPIRGEETTTTESASKEQGKLEDGAPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSSPNKKRKKKKKSAYSMAPNRVVCPYCERQFPWTSSLRRHILTHTGQKPYQCIHCSHHFTTKSNCDRHLLRKHKAKANKMRRARNSSSPDAQVVASSSSSSSNGNNTFSMRNVPERPFKCHQCPSSTFATLGNLKKHRSSKHSRKTASRSESSDQQNSPPQCATQNDQSDYESRSSSMSDNGMETATSAPVAAKPTTNASPSINDATRSRKSPRLSPSPGDVPFKCYLCDSGFSERQDCLDHIKMNHKRSYEMLKAKGALDMASMNIDATEDHMMTSQQHPSDGEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEEPPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVASVATADAAPCALMRYNHYDNMATLTGRMANDGPQGTAPAPLPSPPLPAEVPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHSE