Basic Information

Insect: Linepithema humile
Gene Symbol: RREB1
Assembly: GCA_000217595.1
Location: NW:128792-151049[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.001 0.064 13.1 0.8 1 23 41 63 41 63 0.97

2 15 0.00012 0.0078 16.0 0.1 1 23 77 99 77 99 0.98

3 15 4.2e-05 0.0026 17.4 4.2 1 21 105 125 105 128 0.95

4 15 0.0039 0.24 11.2 0.0 3 23 222 243 220 243 0.96

5 15 0.0055 0.34 10.8 2.6 2 23 249 271 249 271 0.96

6 15 0.082 5.1 7.1 0.2 1 23 500 522 500 522 0.96

7 15 0.00011 0.0071 16.1 0.5 1 23 531 553 531 553 0.98

8 15 0.0031 0.19 11.6 3.1 1 23 559 582 559 582 0.96

9 15 0.0032 0.2 11.5 5.0 1 23 951 974 951 974 0.96

10 15 0.00039 0.025 14.4 0.2 2 23 1245 1266 1244 1266 0.97

11 15 2.4 1.5e+02 2.4 11.7 1 23 1272 1295 1272 1295 0.97

12 15 0.003 0.19 11.6 2.2 1 23 1337 1361 1337 1361 0.97

13 15 3 1.9e+02 2.2 3.5 1 23 1442 1464 1442 1465 0.95

14 15 0.0082 0.51 10.2 0.4 2 23 1515 1536 1514 1536 0.94

15 15 0.0036 0.22 11.4 4.8 1 23 1542 1564 1542 1564 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.001	0.064	13.1	0.8	1	23	41	63	41	63	0.97
2	15	0.00012	0.0078	16.0	0.1	1	23	77	99	77	99	0.98
3	15	4.2e-05	0.0026	17.4	4.2	1	21	105	125	105	128	0.95
4	15	0.0039	0.24	11.2	0.0	3	23	222	243	220	243	0.96
5	15	0.0055	0.34	10.8	2.6	2	23	249	271	249	271	0.96
6	15	0.082	5.1	7.1	0.2	1	23	500	522	500	522	0.96
7	15	0.00011	0.0071	16.1	0.5	1	23	531	553	531	553	0.98
8	15	0.0031	0.19	11.6	3.1	1	23	559	582	559	582	0.96
9	15	0.0032	0.2	11.5	5.0	1	23	951	974	951	974	0.96
10	15	0.00039	0.025	14.4	0.2	2	23	1245	1266	1244	1266	0.97
11	15	2.4	1.5e+02	2.4	11.7	1	23	1272	1295	1272	1295	0.97
12	15	0.003	0.19	11.6	2.2	1	23	1337	1361	1337	1361	0.97
13	15	3	1.9e+02	2.2	3.5	1	23	1442	1464	1442	1465	0.95
14	15	0.0082	0.51	10.2	0.4	2	23	1515	1536	1514	1536	0.94
15	15	0.0036	0.22	11.4	4.8	1	23	1542	1564	1542	1564	0.97

Sequence Information

Coding Sequence: ATGGATTATCCGAAGAAAGAAACTGGATCCGAGAACGGACCTGATCAAGAACAGGAAAACGAAACACAAGTTGATGCAGCTTCACCGTTGTCAAGCGTCGAGCTGTCAGAGAACGGCGCGCATCCATGCCCGACGTGTCCATCGGTGCTTTCCAGTTCCCACGAACTAACAAATCATCTGCGCGGCCACAACTCACCTCGCAGCACAGACTGCAGCGGCGAGGAAGATTACAGCTGCGGCGTTTGCAACAAGGTGCTCAGCTCGGCGAGCTCGCTGGATCGACACGTGCTGGTGCACTCGGGCGAGCGACCGTTCAAGTGCAAATATTGCGACATGTCGTTCACGACGAACGGCAACATGAACCGACATGTGCGCTGCACTCATCGGGTCGTGTCGCCGAACAGTTGCACAGACTCCGAGGGCAGCAGCGGCTCGGACAGGCCGGCGACGACGAATCAAGATGAATACAACAACAACGACATAGCCAGGCGCAATTCGCCAGATCTGATGGACGAGCGGCAGCAACCGTCGCCGAGCAATAAGCGAAAGTGCCCGGACGAAGATGCTAGCGACACGGAAGATCAAAGGCGGCACAAGATCCTTATGAATGACTCCAGAATGATGATCAAGTGCCGGCCGGAGGAGGAGCAGAAGGCTTTTGGCTGTCCAATTTGCGGTCAGGACTTCGTGACCAGCGCGATCCTGGAGTCTCATATGGAGCGCGTGCACCCGGAATCCCCGGCTAGATGCGATATCTGTAACGAATCTTTCAAGAACCACCGCGTGTTGAATCTCCATCGTTCGATGACGCATTACAAGAAGAACTGCGACGGTGGCAACAGCCGGAACCCGCGTAACACCGTCGACGGCTTCCGAGATCTGACGTTCATCGATTTCTCGTCAACCAAGTTCGCGGCGATCGCCCGGGCGATGTGCGAGCGGGAGCTGCACCGGCCAGCCTCCGGCGAGGCTAACACGTTCCAGTGCATGAAGTGTCTGCACGCGTTTCCCTGCCGGCAGGCGCAGATGGCTCACGAGAAGGAGTGCAGGGGACCGTACAAGAACAAGAGAAACAACAACGacaacaacaataacaacGAGTACAATCGAACCAACAATAATCTCGAAACGGAACTGGACGTGCCATCGCCGCAACTTGACGACCCGAAGACGAGGCGCGAGGCGTTTTTCGCTGTGCTGGATTTGAAGAATAAGTACAATTCGACGCACGAGCCGAGGGAACCGAGAGAACCGAAGGAAACCAAAGAACCGAAGGAAACGAAGGATCTAGCGGACATTCCGAGCATCTTGTCCGTGAGTCTGAACGGGCTGCAGACGTTCCCTCGCTCGGACGCCAGCACACCCGAGAGCAACATCAAATTCAATCCGAGCGTCGGGTCGTCGGGCTCCTCGGGCGCTTGCTCCTCCGAGTACAACGAGGAAGAGGCGCAGGACGCCTTCACCGCGGAGTTCCGCAAGATGAAGCTGAAGGGCGAATTTCCTTGCAGGCTGTGCAAGTCCGTGTTTCCGAATCTACGAGCGCTCAAGGGACACAATCGCGCGCACATGAACGTGGAGCAGGGGATGCCGTATCCGTGCAACATGTGTCCGTTCACGAGCACCGACAAGCAGGCGCTGCTGAAGCATCTGAGATCGCACAACGGCGACCGGCCGTTCGAGTGCTCCCTCTGCAACTACGCGTTCACCACCAAAGCGAATTGCGAGAGGCACGTGAAGAATCGTCACGGCAAGATCAGCAAGGAGGAGGTGAAGAACGCGCTGATTTATCATCCGAGCGAGGACTCGACGAACGACAATGTNNNNNNNNNNNNNCCCAGAGTCGTCAGGGAGGACGTGCGCAAGACTCTCGTTTATCCGAACGAGCGCGAAGAGGGCGCTCAACAGCAGCAAATGCATTATCCGCCCGTGCCGATCGACTGTAATCCCGGACCGTCGAACGTCCGCGCCGAGATACTGATAAATCGCTACGAGAAGCCCGACATATTTCCCATGCCGGCGAAAATACAGGCTCTCAATCTCGTGAAGAGAACCGCCGATGAGATGAGCATGCCGCACGATCTGATCGTGAAGGCCAATTATTCGAAGCTCGACGAAGACGTTGAGTCGAGATCGTCGGACGGCAGCGTGTCTCTAGTCAGTGATGCCAAAACAGATACACACCAAAGAATTCAAGCCACTCCGATTAACTTGACGAAATCGTCGGCGAGCTCGGCGATGAATTCGGGCGAGGACAGTCCGTTGGATCTGTCGATGGACGTTCTGGATCTGAGCAGAAAGCGGAAGAGGGACATCGAGGACACCGGCTCCCAGGAGGAGAAGCGGTTCAAGAGCAACCAGTCGGAATTGTATGCGAATCCAGCGCTGCTGTTGACGCAAGCGCTGCTGAACAGAGCTTGCGAGAGCTCGCCGACGACGTCGCTCGAAAACTTCTACGCGAATACTCTCTATCGTAATCTCGGCACGTTGACCGGCGCGGGCATGATACCGGCGACGTACTTCCTGCCGCACATGTTCGGCCAAGCTGAATTGGCCGCGAAAGGCAGGCTGCAGAAGGAGCTGGTCAGGGGCTTGCAGTTGACCGGCGGCGGCACTCTGCCGATGGATCCATCGTTGCCGAGCACGAGTTACGCGGCGTATTCGCAGGCGAGGGATGTCGTCCCGCAGACCTCGAGCGAGCAGACCGCCTATGCGAGCTTGATGAACGCGCAAACAGCGGCGAGCCGCGACAAAGCGGACAGCATTCCGTCGAACGATCCTGTGAAGATGGTGCTCAAGAACGGCGTGCTGATTCCCAAGCAAAAGCAGCGGAGATACCGAACCGAGAGACCGTTCCACTGCGAGCACTGCACGGCGAGATTCACGCTGAGGAGCAACATGGAGCGACACATCAAGCAGCAACATCCTCAGTATTGGAGCCAGAGACCGCGCGGCGGGCATTCGACCAGAGGCAGACCACCCGCGAGCCATCCGACTATGGTGCAAACTCCTGGCCCGTCCACCTCGCAAGTGGCGCAATCGTATCCGAATATTCTGCCGAGCGTCGAGTCGCCGAGTATGGTCCCTCCGGCGGAGTACAGCACGCATCCCATCTCAGATCAAGTGAAGTATGCGATTTTGGCGCAACAGTTGAAAGCTAATAAAATAGAGGACAACGATACGGATGACGAGATGGTGATAGACGAAGAGTCAGGCGATAACAGAGACGCTCAGGAGTCGCAAGTTCAACGCGAATCTGGCACGAGCTTGCTGAGAGATCAACTTGAAAGCAACGAAGGCGTCAAAGACGTTGTCGTGAAGACGGAAATGGCCGAACCGGCGGAAGAAACGTCGGAAGAGTCTCCTAACGAAGAGGAGGCGCACAATAGCGAGATCAAGTCGGAAGAATCCGCGGCCGCTGAGAGTAAGCCAATACGCACTGAAGAAACGACTGCGGCGGAATCCGCTGGAAGGCAGCAAACCAAGCTCGAGGACGGAACACCCGATCTCGCCAGCGTCTCAAAGCTCTTGGACAACGCGTCTCAGCAGTATCAACAATTTCAGCCGCAGTACTTGACTGACGAGGACGAGGGTCCCGTGGCGTCGACCAGCGGCAACAATTCCGGCAGCGAGAAATCCGACTCTGTGAATTCGAACTCCGGGAGCACGTGTTCGTCGAacaagaagaggaagaagaagaagaagtccGCGTATTCGATGGCGCCGAATCGAGTTGTGTGCCCTTACTGTCAGCGTCAGTTCCCTTGGACTTCGTCGTTGCGACGACACATTCTCACTCACACCGGTCAGAAGCCGTACCAATGTATGCACTGCTCACATCACTTCACCACCAAGTCTAATTGCGACCGACACTTGCTGAGGAAGCACAAGGCGAAGGCGAATAAAATGCGCCGCGCTAGGAACTCCTCCTCGCCGGACGTGCAAGTGGCCACCGGCAACAGCAGCGCGAGCAGCAACACGTTCTCCATGAGAAACGTGCCCGAGAGACCGTACAAGTGTAATCAATGCCCGAGCTCGACATTCTCCACGTTAGGCAATCTGAAGAAGCACCGGTCGACGAAACATCGCAAGGCCGCGTCTCGATCGGAATCCAGCGATCAGCAGAACAGCCCGCCGCAGTGCGCCGCGCAGAACGACCAGAGCGATTACGAAAGCCGTTCGTCAAGCGCGTCCGAGAACATGGAGAACTCGTCCGcgaccgccgccaccgccaaATCGAATTCCAACACGTCGCCTACGATAAATAACGAGGGCACCAAGTCGCGCAAATCGCCTAGATCGTCACCGGGTCCTGGTGACGTTCCCTTTAAATGCTACCTGTGCGACAGCGGCTTCTCCGAACGCCAAGACTGCTTGGACCATATCAAGGTACATCACAAACGCTCATACGAGATGCTGAAGGCCAAAGGCGCTCTCGAAATGAATATAGATGCGGCCGAAGATCAGATATCCGCAGCGCAGCAACATCTCAGCGACGGCGAGGAAAAGAAAGGCCGTTTTCCCGACTATAGCAATAGAAAGGTCGTGTGCGCTTTCTGCATGAGACGATTTTGGTCCGCGGAAGATCTTCGGCGTCACATGAGAACCCACACGGGCGAGAGGCCCTTCGCATGCGATATCTGCACTAGGAAATTCACGCTGAAGCATAGCATGCTGCGTCATCGCAAGAAGCACGAATCGGTGGATTCCTCCATGTACATAGGCAACAGCGGTGACGAGGAGATCTCGCCTGCGCAGCCACCGACGATAACCCCCAGGAGTCAGCAGCATTCGCCGATCTCCACGAACACCAGCAGACCCCGCACTCAGGACAGAATATCCCTGCCGACCGTCGCGGCGGTCGCAACGGCGGATGCGGCACCCTGCGCATTGATGCGATATAATCACTACGATAACATGGCCACTCTCTCCGGCAGAATGGCAAACGACGGTACGCAGAGCACCGCTCCTGCCTCTCTGCCGTCCCCGCCACCACCTACGGAAGCACCCGGCGAGAGCGGAGACAACGATCTGATTTCGAACTTGTTGGGAATACGCGAGAAAGGTTTGCTCGACAAAGTTCTTCTAAGTTCGGCGGACGACGCGGCGAAGCTGCTGGGTGTTAATCACAGCGAGTGA
Protein Sequence: MDYPKKETGSENGPDQEQENETQVDAASPLSSVELSENGAHPCPTCPSVLSSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCDMSFTTNGNMNRHVRCTHRVVSPNSCTDSEGSSGSDRPATTNQDEYNNNDIARRNSPDLMDERQQPSPSNKRKCPDEDASDTEDQRRHKILMNDSRMMIKCRPEEEQKAFGCPICGQDFVTSAILESHMERVHPESPARCDICNESFKNHRVLNLHRSMTHYKKNCDGGNSRNPRNTVDGFRDLTFIDFSSTKFAAIARAMCERELHRPASGEANTFQCMKCLHAFPCRQAQMAHEKECRGPYKNKRNNNDNNNNNEYNRTNNNLETELDVPSPQLDDPKTRREAFFAVLDLKNKYNSTHEPREPREPKETKEPKETKDLADIPSILSVSLNGLQTFPRSDASTPESNIKFNPSVGSSGSSGACSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCKSVFPNLRALKGHNRAHMNVEQGMPYPCNMCPFTSTDKQALLKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGKISKEEVKNALIYHPSEDSTNDNVXXXXPRVVREDVRKTLVYPNEREEGAQQQQMHYPPVPIDCNPGPSNVRAEILINRYEKPDIFPMPAKIQALNLVKRTADEMSMPHDLIVKANYSKLDEDVESRSSDGSVSLVSDAKTDTHQRIQATPINLTKSSASSAMNSGEDSPLDLSMDVLDLSRKRKRDIEDTGSQEEKRFKSNQSELYANPALLLTQALLNRACESSPTTSLENFYANTLYRNLGTLTGAGMIPATYFLPHMFGQAELAAKGRLQKELVRGLQLTGGGTLPMDPSLPSTSYAAYSQARDVVPQTSSEQTAYASLMNAQTAASRDKADSIPSNDPVKMVLKNGVLIPKQKQRRYRTERPFHCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPASHPTMVQTPGPSTSQVAQSYPNILPSVESPSMVPPAEYSTHPISDQVKYAILAQQLKANKIEDNDTDDEMVIDEESGDNRDAQESQVQRESGTSLLRDQLESNEGVKDVVVKTEMAEPAEETSEESPNEEEAHNSEIKSEESAAAESKPIRTEETTAAESAGRQQTKLEDGTPDLASVSKLLDNASQQYQQFQPQYLTDEDEGPVASTSGNNSGSEKSDSVNSNSGSTCSSNKKRKKKKKSAYSMAPNRVVCPYCQRQFPWTSSLRRHILTHTGQKPYQCMHCSHHFTTKSNCDRHLLRKHKAKANKMRRARNSSSPDVQVATGNSSASSNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHRKAASRSESSDQQNSPPQCAAQNDQSDYESRSSSASENMENSSATAATAKSNSNTSPTINNEGTKSRKSPRSSPGPGDVPFKCYLCDSGFSERQDCLDHIKVHHKRSYEMLKAKGALEMNIDAAEDQISAAQQHLSDGEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFACDICTRKFTLKHSMLRHRKKHESVDSSMYIGNSGDEEISPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLSGRMANDGTQSTAPASLPSPPPPTEAPGESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: -
80% Identity: -