Basic Information

Insect: Formica exsecta
Gene Symbol: RREB1
Assembly: GCA_003651465.1
Location: NW:2138805-2150605[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00025 0.017 14.9 1.7 1 23 210 232 210 232 0.97

2 15 0.00013 0.0088 15.8 0.1 1 23 246 268 246 268 0.98

3 15 8.6e-05 0.0058 16.4 4.7 1 21 274 294 274 297 0.95

4 15 0.002 0.13 12.1 0.0 3 23 396 417 394 417 0.96

5 15 0.0026 0.17 11.7 3.3 2 23 423 445 423 445 0.96

6 15 0.64 43 4.2 0.1 1 23 670 692 670 692 0.96

7 15 7.2e-05 0.0049 16.6 0.2 1 23 701 723 701 723 0.98

8 15 0.0033 0.22 11.4 3.1 1 23 729 752 729 752 0.96

9 15 0.0029 0.19 11.6 2.2 3 23 1124 1145 1122 1145 0.96

10 15 7.9e-05 0.0053 16.5 0.1 2 23 1414 1435 1413 1435 0.97

11 15 0.77 52 4.0 10.4 1 23 1441 1464 1441 1464 0.96

12 15 0.0032 0.21 11.5 2.2 1 23 1507 1531 1507 1531 0.97

13 15 0.097 6.5 6.8 1.8 1 23 1612 1634 1612 1635 0.96

14 15 0.012 0.8 9.7 0.4 3 23 1687 1707 1685 1707 0.93

15 15 0.002 0.14 12.1 5.2 1 23 1713 1735 1713 1735 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00025	0.017	14.9	1.7	1	23	210	232	210	232	0.97
2	15	0.00013	0.0088	15.8	0.1	1	23	246	268	246	268	0.98
3	15	8.6e-05	0.0058	16.4	4.7	1	21	274	294	274	297	0.95
4	15	0.002	0.13	12.1	0.0	3	23	396	417	394	417	0.96
5	15	0.0026	0.17	11.7	3.3	2	23	423	445	423	445	0.96
6	15	0.64	43	4.2	0.1	1	23	670	692	670	692	0.96
7	15	7.2e-05	0.0049	16.6	0.2	1	23	701	723	701	723	0.98
8	15	0.0033	0.22	11.4	3.1	1	23	729	752	729	752	0.96
9	15	0.0029	0.19	11.6	2.2	3	23	1124	1145	1122	1145	0.96
10	15	7.9e-05	0.0053	16.5	0.1	2	23	1414	1435	1413	1435	0.97
11	15	0.77	52	4.0	10.4	1	23	1441	1464	1441	1464	0.96
12	15	0.0032	0.21	11.5	2.2	1	23	1507	1531	1507	1531	0.97
13	15	0.097	6.5	6.8	1.8	1	23	1612	1634	1612	1635	0.96
14	15	0.012	0.8	9.7	0.4	3	23	1687	1707	1685	1707	0.93
15	15	0.002	0.14	12.1	5.2	1	23	1713	1735	1713	1735	0.98

Sequence Information

Coding Sequence: ATGGTTAAGTGCAACATATGCTGGAAAGAAcattctgttttattatcacGGCAATTTCACAgTTTTCCATCAGATGCAGAAAGGCGAGAAAAATGGTTTAATAGCATTGGTTATACTGTCGATACTTACAAAAATGCAAGAATTTGCAGTGATCATTTTACAGAAGACGATTATTACTATACTGGCACACCTATACTAAgtagaagattaaaaaaaactgcAATTCCGTCTGTTTTTACACAaagATCTTGTAGAAGGTCCAAGAAAGATACAAGAagcaatattcaaaataacaaTCAAGATGAATCACTAATAGATATTGAATATGAATCAACAATGGATATCCAACATCAATCGGCAATAGATGTTCAACAATCAACAATCGACAATCATGACAATTCAACAATTCAACATGACAATCTTATTTTGGTTAAACCAACAGTTGTCGAGAATACAGTAACACATAATAACATCAGTCGAAGAAGAAAACGATGTAATGATATGGAAAAGATTTTCCTAAAGACTGCGATTGAATCTGAGAATGGAACCGATCAAGAGCAGGAGAACGAAACACAAATTGATGCCGCATCACCATCATCAAGCGTCGAGTTGTCGGAGAATGGCACGCATCCGTGCCCAATGTGCTCGTCGATATTTTCCAGTTCTCACGAACTGACGAATCATCTGCGCGGCCATAACTCACCCCGCAGCACAGACTGCAGCGGCGAAGAGGACTACAGCTGCGGGGTTTGCAACAAGGTGCTCAGCTCGGCAAGCTCGCTGGACCGACACGTCCTGGTACATTCGGGCGAACGGCCGTTCAAGTGCAAATACTGCAACATGTCGTTCACGACGAACGGCAATATGAACCGTCACGTGAGGTGCACCCATCGGGTGGCATCGCCGAATAGTTGCACGGACTCCGAAGGCAGCAGCGGCTCGGAGAGACCGGCGACGACGAATCAGGGCGAGTACAACAACAACGAATTAGCCAGGCGCAACTCGCCGACTTTGATCGACGACCAGCAACAACCGTCGTCGCCCGGCAATCATCACGCGAGCAAGCGAAAATGCTTGCAAGATGACGCCAGTGACACGGAGGAACAGAAGAGGCACAAGACCCTCATGAATAATGCCAGAATAATGATAAGATGCCAACCGGACGGGGAGCAGATGACGTTCGGTTGTATGATCTGTGGCAAAGACTTCGTGAGCGGCGCGATGCTAGAGGCTCACATGGAACGCGTGCATCCAGAATCTCTGGCCACCTGCGAGATCTGCAGCATGACCTTCAAGAATCACCGGCAATTGAACCTTCATCGTTCTATGAGTCACTATAAGAAGAATGCAGGCGGCAACAACAGCCGTCGCAGCACCGTGGACGGTTTCGGCGATCTCACGTTCATGGACTTTTCGGCAGCGAAGTTCGCGGAGATCGCTCGACGGATGTGCGAGCAGGAGCTGCACCGGCCGGCCTCTGGCGAGGTGAACAGGTTCCAGTGCATGAAGTGCCTGCACGCGTTTCCCTGCAGACAGGCGCAGCTCGATCATGAAAAGGAATGCAAAGGTCCATACAAGAACAAGAGAAACAGTAACGACAgcaacaataataatgataacaatACCAATAACAATCTCGAAACGGAACTGGACGCTCCGTCCCCGCAGCCCGACGATCCCAAAACGACGCGCGAGATCTTCTTCGCCGTGTTGGATCTGCAGAATAAATCCTTGGCGCGCGAAGCGAAGGAACCTAGGGAGCCGAAAGAGATCAAGGAGCCGAAGGAGATGAAGGATCTAGCGGATATCCCGAGCATCTTGTCCGTCAGTTTAAACGGGCTGCCGACCTTCCCGCGATCGGACACCAGCACGCCCGAGAACAACATCAAGTTTAATCCGAATATCGGCTCTTCGGGTTCCTCGGGTACCTGCTCGTCCGAATATAACGAGGAGGAGGCGCAGGATGCTTTCACCGCGGAATTTCGGAAAATGAAGCTGAAGGGCGAGTTTCCCTGCAGATTGTGCGCGTCCGTGTTCCCCAATCTGCGGGCGCTCAAGGGGCACAATCGCGCGCATATGAACGTAGAGCCGGGAATGCCATATCCGTGCAATATGTGCCCCTTCACCAGTACCGACAAAGGGGCTCTGTTGAAGCACTTGAGATCGCATAACGGTGACCGACCTTTCGAATGCTCCCTCTGCAATTACGCGTTCACCACTAAGGCAAATTGCGAGAGGCATGTAAAGAATCGCCATGGAATGATCAGCAAGGAGGATGTTAAGAATGCGCTGATCTATCATCCAAGCGAGGACTCGACAAATGAGAATGTTGAGAGAAGCTCGCCCAGAGGTGTCAGGGATGACGTGCGAAAAACGCTCATCTATCCGAACGAACGTGAAGAAATCTCTCAACAACAGCAGATACATTATCCGCCTGTATCGATGGACTGTAACCCGGGACCTTCGAATGTTTGCGCTGAAATGCTGATGAACTGTTACGAGAAGCCGGACATATTCCATAGACCAATAAAAATACAGGCTCTGAatctcgtgaaaaaaaatgcCGAAGAATCGAACGCGTCTCATGATCTGATCGTGAAGTCTAATTATTCAAAGATCGACGAGGATATTGAGTCAAGATCATCGGATGGCAGCGTGTCTCTAGTCAGCGATACCAAAACAGATACACACCAAAGAATTCAAGCTAGTCCGATAAATCTGACCAAGTCCACGACAAGCTCCGTGTTAAGTTCGGGAGAAGACGGTCCTTTGGATCTATCCATGGATGTTGTTCTAGATCTTAGCAGGAAACGGAAGAGGGAGAACGAAAATTCTCAGGAGGAGAAACATTATAAGAACAATCAACAGGAATTGTATGCCGCGAATCCGGCACTGCTGCTAACTCAAGCTCTGCTGAACAGAGCACGCGAAAGTTCGACTACGTCGTTGGAGAATTTTTGTGCGAGCACTTTCTATCGTAATCTCAACACGTTGACTAGCGCCTCCATGATACCGTCGTATTTTCTCAATCCTCACATGTTTGGTCAGGAATTGACCGAGAAGGGCAAATTGCAGAAGGAGCTAGTCAGGGGTTTGCAATTGACCGGCGGCAGCACCTTTCCCGTGGATCCATCATTGCCCAGCACCAGTTACGCGGCATATGCGCAGGCGCGGGACATCCCGCAAACCTCGAGCGAACACAACGCCTACGCGAACCTGGTGAACGCGCAGATAGCCAACCAAGCCGCACCGAGCCGCGAGAAAACGGATAGCATTTCATCGAACGATCCCGTGAAGATGGTACTCAAAAACGGCGTGCTAATACCCAAGCAGAAGCAGCGCAGATACCGCACCGAGAGACCGTTCGGTTGCGAGCACTGCACGGCAAGATTCACACTGCGAAGCAACATGGAACGACATATTAAGCAACAACATCCTCAGTATTGGAGCCAAAGACCCCGCGGCGGACACTCAACTAGAGGCAGACCGCCCGCGAATCATCCGAATATGATGCAGAATTCCGGCCCGTCAACCTCGCAAGTAATTCAACCATATCCGAATATTCTTCAAAACGTCGACTCGTCAATGGTTACATCGGACTATAATACGCATCCCATTTCAGATCAAGTAAAGTATGCCATTCTAGCACAACAATTAAAAGCCGATAAAATGGATGACAATGATTCGGATGACGAAATGGTAATAGATGAGGAATCAGGCGACAGGGATGCACAGGAACCGCAAGCTCAGCACGAACTTAGCACAAGCTTGCTGAGAGATCAGTTAGAGAGCAGCGAGGGCATTAAAGATATCATCGTGAAAAAGGAACTAATTGACCCCGCGGAAGAGACCTCGGAAGAATCTCACGGTGAACAAGTTGCACGAAACGGCGTAGACAGGATCAACGCGGAAGAATCTGCGGCTGCTGAAAACAAATCGATACACAACGAAGAAATGATCAAGACGGAACCCTCCGGGAAAGAGCAGGGCAAACTCGAGGACGGAGCAGCCGATCTCGCGAGTGTCTCGAAACTATTGGACAACGCATCTCAGCAATATCAGGAATTCAAACCGCAAGACTTGAGCGACGAAGAAGGTCCTGTAGCCTCGACCAGTGGCAACAATTCCGGTAGCGAAAAGTCCGACTCGAATTCTTTAAACTCCGGAAATGATTCTTCatcgaataaaaagaaaaagaagaagaagaagtccGCGTACTCGATGGCACCAAATCGGGTCCCCTGTCCTTATTGTCCGCGTCAATTCCCTTGGAGCTCATCGCTGAGACGGCACATCCTCACTCATACCGGCCAGAAGCCCTTTCAGTGCACACATTGCTCGCATTACTTTACCACGAAGTCCAACTGCGACCGCCACTTGTTAAGGAAACATAAGGCAAAGGCGAATAAGATGCGCCGTGTCAGAAATTCCTCCTCGCCAGACGTACAGGTGGTTgccagcagcagcagcagtagTAGTAACAATACGTTCTCCATGAGAAACGTGCCCGAGAGACCATACAAGTGCAATCAGTGCCCAAGCTCGACCTTCTCTACTTTAGGCAATCTGAAAAAGCACCGATCGACCAAGCATCGTAAGACTACGTCCCGGTCGGAGTCCAGCGATCAACAGAATAGTCCACCGCAGTGCTCCAACACGCAGAACGATCATAGTGATTACGAGAGCCGGTCATCGAGCGCATCCGAGAACATGGAGAATTCCGCTAGCACAGCCGTAAAGGTCAATTCTAATACGACATCTCTGACATCGATGAACGAGATCACCAGATCACGCAAGTCGCCGAGATCATCGCCTGGTCCCAGCGATGCTCCCTTCAAATGTTACTTATGCGACAGCGGCTTTTCCGAGCGTCAAGATAATTTGGATCACATCAAAATGCACCACAAGCGCTCGTACGATATGCTGAAGGCCAAGGGCGCCCTCGATATGGCATCTATGAACATAGACGCGAATGAAGATCAGATGGCACAGCAACATCCTAGTGACGGCGAAGAGAAGAGAGGTCGATTTCCCGATTACAGTAATAGAAAgGTTATATGTGCTTTCTGTATGAGACGATTTTGGTCCGCGGAAGATCTCCGGCGTCACATGAGGACCCACACAGGCGAAAGACCATTTGAATGCGACATCTGCACTAGGAAATTCACGCTGAAGCACAGCATGCTGCGCCATCGTAAAAAGCACGAGTCCGTGGATTCTGCCATGTACATAGGTAATAGCGGTGACGAGGACAACTCGCCCGCGCAGCCACCGACGATAACACCTAGAAGTCAGCAGCATTCGCCAATCTCTACGAATACCAGCAGGCCCCGTACCCAGGACAGAATCTCTCTACCGACCGTTGCGGCAGTCGCAACAGCGGACGCAGCACCCTGTGCGCTTATGCGGTACAATCACTACGACAACATGGCCACTCTCACCGGCAGAATGGCAAACGACAGCTCGCAGAACGCTGCGCCTGCTTCTCTGCCTTCCCCGCCACCTCCCGCGGAAGTGCCCAGCGAGAGCGGCGACAACGACTTGATCTCCAATTTGCTGGGCATACGTGAGAAAGGTTTACTCGATAAAGTTCTTCTGAGCTCGGCGGACGACGCGGCCAAGTTGTTGGGTGTCAATCATAGCGAGTGA
Protein Sequence: MVKCNICWKEHSVLLSRQFHSFPSDAERREKWFNSIGYTVDTYKNARICSDHFTEDDYYYTGTPILSRRLKKTAIPSVFTQRSCRRSKKDTRSNIQNNNQDESLIDIEYESTMDIQHQSAIDVQQSTIDNHDNSTIQHDNLILVKPTVVENTVTHNNISRRRKRCNDMEKIFLKTAIESENGTDQEQENETQIDAASPSSSVELSENGTHPCPMCSSIFSSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCNMSFTTNGNMNRHVRCTHRVASPNSCTDSEGSSGSERPATTNQGEYNNNELARRNSPTLIDDQQQPSSPGNHHASKRKCLQDDASDTEEQKRHKTLMNNARIMIRCQPDGEQMTFGCMICGKDFVSGAMLEAHMERVHPESLATCEICSMTFKNHRQLNLHRSMSHYKKNAGGNNSRRSTVDGFGDLTFMDFSAAKFAEIARRMCEQELHRPASGEVNRFQCMKCLHAFPCRQAQLDHEKECKGPYKNKRNSNDSNNNNDNNTNNNLETELDAPSPQPDDPKTTREIFFAVLDLQNKSLAREAKEPREPKEIKEPKEMKDLADIPSILSVSLNGLPTFPRSDTSTPENNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCASVFPNLRALKGHNRAHMNVEPGMPYPCNMCPFTSTDKGALLKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNENVERSSPRGVRDDVRKTLIYPNEREEISQQQQIHYPPVSMDCNPGPSNVCAEMLMNCYEKPDIFHRPIKIQALNLVKKNAEESNASHDLIVKSNYSKIDEDIESRSSDGSVSLVSDTKTDTHQRIQASPINLTKSTTSSVLSSGEDGPLDLSMDVVLDLSRKRKRENENSQEEKHYKNNQQELYAANPALLLTQALLNRARESSTTSLENFCASTFYRNLNTLTSASMIPSYFLNPHMFGQELTEKGKLQKELVRGLQLTGGSTFPVDPSLPSTSYAAYAQARDIPQTSSEHNAYANLVNAQIANQAAPSREKTDSISSNDPVKMVLKNGVLIPKQKQRRYRTERPFGCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANHPNMMQNSGPSTSQVIQPYPNILQNVDSSMVTSDYNTHPISDQVKYAILAQQLKADKMDDNDSDDEMVIDEESGDRDAQEPQAQHELSTSLLRDQLESSEGIKDIIVKKELIDPAEETSEESHGEQVARNGVDRINAEESAAAENKSIHNEEMIKTEPSGKEQGKLEDGAADLASVSKLLDNASQQYQEFKPQDLSDEEGPVASTSGNNSGSEKSDSNSLNSGNDSSSNKKKKKKKKSAYSMAPNRVPCPYCPRQFPWSSSLRRHILTHTGQKPFQCTHCSHYFTTKSNCDRHLLRKHKAKANKMRRVRNSSSPDVQVVASSSSSSSNNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHRKTTSRSESSDQQNSPPQCSNTQNDHSDYESRSSSASENMENSASTAVKVNSNTTSLTSMNEITRSRKSPRSSPGPSDAPFKCYLCDSGFSERQDNLDHIKMHHKRSYDMLKAKGALDMASMNIDANEDQMAQQHPSDGEEKRGRFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEDNSPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDSSQNAAPASLPSPPPPAEVPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_00868296;
80% Identity: iTF_00730118;