Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: Rreb1
Assembly: GCA_000187915.1
Location: NW:398471-408661[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.3 1.6e+02 2.4 0.2 9 21 2 14 1 17 0.90

2 13 0.00012 0.0081 15.9 0.1 1 23 113 136 113 136 0.96

3 13 0.0061 0.43 10.4 1.2 2 23 142 164 141 164 0.95

4 13 0.15 11 6.1 0.2 1 23 392 414 392 414 0.96

5 13 1.3e-05 0.00091 18.8 0.2 1 23 423 445 423 445 0.98

6 13 0.0025 0.18 11.7 3.1 1 23 451 474 451 474 0.96

7 13 0.00028 0.02 14.6 3.1 1 23 844 867 844 867 0.97

8 13 8.4e-05 0.0059 16.3 0.2 2 23 1136 1157 1135 1157 0.97

9 13 2 1.4e+02 2.5 11.7 1 23 1163 1186 1163 1186 0.97

10 13 0.026 1.8 8.5 3.2 1 23 1229 1253 1229 1253 0.96

11 13 1.9 1.3e+02 2.6 1.7 1 23 1333 1356 1333 1356 0.94

12 13 0.0067 0.46 10.3 0.4 2 23 1409 1430 1408 1430 0.94

13 13 0.0016 0.11 12.3 5.2 1 23 1436 1458 1436 1458 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.3	1.6e+02	2.4	0.2	9	21	2	14	1	17	0.90
2	13	0.00012	0.0081	15.9	0.1	1	23	113	136	113	136	0.96
3	13	0.0061	0.43	10.4	1.2	2	23	142	164	141	164	0.95
4	13	0.15	11	6.1	0.2	1	23	392	414	392	414	0.96
5	13	1.3e-05	0.00091	18.8	0.2	1	23	423	445	423	445	0.98
6	13	0.0025	0.18	11.7	3.1	1	23	451	474	451	474	0.96
7	13	0.00028	0.02	14.6	3.1	1	23	844	867	844	867	0.97
8	13	8.4e-05	0.0059	16.3	0.2	2	23	1136	1157	1135	1157	0.97
9	13	2	1.4e+02	2.5	11.7	1	23	1163	1186	1163	1186	0.97
10	13	0.026	1.8	8.5	3.2	1	23	1229	1253	1229	1253	0.96
11	13	1.9	1.3e+02	2.6	1.7	1	23	1333	1356	1333	1356	0.94
12	13	0.0067	0.46	10.3	0.4	2	23	1409	1430	1408	1430	0.94
13	13	0.0016	0.11	12.3	5.2	1	23	1436	1458	1436	1458	0.98

Sequence Information

Coding Sequence: ATGTCGTTCACGACGAACGGCAACATGAATCGACACGTGAAGTGTACCCATCGGATGGTGTCACCGAACAGTTGCACGGACTCCGAGGGCAGTAGCGGCTCGGAGAGACCAGCGGCTACCAGCCAGGATGAgtacaacaacaacaacgaaATAGCCAGGCGAAATTCGTCGGATCTGATCGACGATCAGGAACAACCATCGCCCAGCAACAACCGCGCGAATAAACGGAAGTGCCCGGAGGAGGACGTCAGCGACGTAGAAGATCAAAGGAGACATAAGATTCTCTTGAACAACAGAATGCCGATCAAGTACCGGCCGGAAGAGGAGCAGAAAGCCTTCGATTGTCCGGTTTGCAGTCAGGATTTTGCGAGTAGCGCGCTTCTCCAATCGCATATGGAACGCGTGCATCCGGGCTCCCTGGTCACATGTGAGACGTGCAACGAgtcattcaaaaattatcgtGTGCTGAACCTCCATCGTACGATGAAACACTACAAAAAGAACTCGGAGGGCAACAACAGCCGTAGCCTGCGCAACACCGTGGACGGTTTCAAAGATTTAACATTCATCGACTTCTCATCCATCAAGTTCCCGACAATCGCTCGGGCGATGTGCGAACGTGAGCTGCACCGGCCAGCCTCCGGTGAGGTCAACAGGTTCCAGTGCATGAAGTGTCTGCACGCGTTTCCGTGCAGGCAAGCCCAGCTGGCCCACGAGAAGGAATGCAAGGGCCCCTACAAGAACAAAAGAAACAGCAACgacaacaataacaataacgatATCAGTACGAATAACAATCTCGAAGCGGAGCTAGACGATCCGACTCCGCAGTCCGAGGATCCCAAGACGAAGCGCGAGATGTTCTTCGCCGTGTTAGATCTGCAGAACAAGTCCTCGACGCATGAGACGAAGGAGCCGCGGGAACCGAGCGAGACCGGAGACCTAGCGAAAGAGACCAAAGATTTAGCGGATATCCCGAGTATCCTGTCCGTCAGTTTAAACGGGTTACAAACCTTTCCTCGGTCGGATGCCAGCACTCCCGAGAATAACATCAAGTTCAATCCGAACATTGGTTCTTCAGGCTCCTCGGGCACTTGCTCGTCCGAGTACAACGAGGAGGAAGCGCAGGATGCCTTTACCGCGGAATTCCGGAAGATGAAACTGAAGGGTGAATTTCCGTGTAGGTTATGCAGATCCGTATTTCCCAATCTACGAGCGCTGAAGGGGCACAATCGCGCACACATGAACGTGGAACCGGGTATGCCGTATCCGTGCAATATGTGCCCGTACACCAGCACCGACAAGGGAGCTTTGATGAAACATTTGAGATCGCACAACGGCGATCGGCCGTTCGAGTGCTCCCTCTGCAATTATGCGTTCACCACCAAAGCGAATTGCGAGAGGCACGTGAAAAATCGTCACGGGATGATCAGTAAGGAGGACGTCAAGAACGCGCTGATCTATCATCCAAACGAGGATTCGACCAACGACAATATCGAGAGGAGTTCGCCCAGGATCGTCAGGGAAGATGTGCGGAAGACGCTCGTTTATCCGAATGAACGCGAGGAGTCTTCCCAACAACAACAGATACATTATCCTGTGACGATGGATCCTGGACCATCGAATGTCCGCGCCGAGATACTGATAAATCGCTACGAGAAAACAGACGTGTTCCCCAGACCGACGAAGATACAAGCTCTTAATCTCATAAAGAAAAGTGCCGACGAAGCAAACCTATCTCACGATCTGATCATGAAATCTAATTATTCCAAGATTGACGACGACATTGAGTTGGGATCGTCGGACGGCAGCGTGTCTCTAGTCAATGATACCAAAACGGATACACACCAAAGAATTCAAGCTAGTCCGATGAACCTGTCGAAGCTCTCGACGAGCTCCGGATTAAGCTCGGGGGAGGACGGTCCGTTGGATCTGTCCATGGATGTGTTGGATCTGAGCAGGAAACGAAAGAGGGACAATGACGATTCTGGCTTGCCGGAGGAGAAGCGATTTAAGAGCAGCCAGGAATTGTACGCCACGAATCCAGCGTTACTGTTGACCCAAGCTCTGCTGAACAGAGCACGCGAGAACTCACCGACGACGTCGTTAGAGACTCTCTATGCGAATACCTTGTATCGCAATTTTGGTGCCACGTTAACGGGCGCCAGTATGATACCACCATACTTCCTAAGCCCTCACATGTTCGGTCAGGACTTGGCGACGAAGGGCAGGTTGCAGAAGGAGCTGGTCAGAGGTCTGCAACTGACCGGCGGCAGCACCCTTTCGGTGGACCCGTCGTTACCCAGCACCAGTTACGCGGCGTATTCGCAAACGCGGGACACCACGCAAACATCGAGCGAACAGAATGCCTACGCGAATCTGATGAGCGCGCAGATGAGCGCTAATCAGACCACGACGAGCCGCGAGAAAACGGATAATATCTCGTCGAACGATCCCGTGAAAATGGTACTCAAGAATGGAGTGCTGATCCCCAAGCAGAAGCAGCGCAGATATCGGACCGAGAGGCCTTTCACTTGCGAGCACTGCACGGCGAGGTTCACGCTGAGAAGCAATATGGAACGGCACATCAAGCAGCAGCATCCGCAGTATTGGAGCCAAAGACCCCGCGGTGGACATTCGACCAGAGGCAGACCACCTGCGAGCCATCCGACTATGGTGCAGACTCCTGGCCCGTCGACCTCGCAGGTAGCTCAACCGTATTCGGGCATTCTGCCGAAGGCCGTCGATACGCCGGTGACATCGACGGAATATGGCACGCATTCCATCTCGGATCAAGTGAAATACGCGATCCTGGCGCAACAACTGAAGGCGAATAAAATGGACGACAATGATACGGACGATGAGATGGTGATAGACGAAGAGTCGGCCGATCGGGATTCTCAGGAGTCGCAAGCTCAACGCGAACCTAGCACGAGCTTGCTGCGAGATCAGCTGGAGAATAGCGAGGGTGTCAAGGATGTCGTCGTGAAAACGGAAGCAGTCGAGTCCGCGGAGGAGGCCTCGAAGGAGATACACGGCGAACAAACTGCACGAAGTAACGGCGATAATCCGGAAGAATCCACAGTTGCTGAAGGTAAGTCGGTACACGCTGAAGAAACGATCAAAACTGAATCTACCGAGCGAGAGCAGAGCAAACTAGAAGACGGAACGCCCGATCTCGCGAGTGTCTCGAAACTCTTGGACAACGCGTCCCAGCAATATCAGCAATTTCAGCCGCAATACTTGAGTGATGAGGAGGGTCCCGTTGCCTCGACCAGCGGCAACAATTCCGGTAGCGAGAAGTCCGACTCCATGAATTCCTTGAATTCCGGGAACGATTCCTCGCCgaacaaaaagaagaagaagaaaaagaagtccGCGTACTCGATGGCGCCGAATCGTGTCACATGCCCATACTGCGAACGCCAGTTCCCGTGGAGCTCGTCACTGAGACGACACATCCTCACCCACACGGGCCAGAAGCCATATCAGTGCATGCACTGCTCGCATCACTTTACCACCAAGTCCAACTGCGATCGCCATCTGTTAAGGAAACACAAGGCAAAGGCGAACAAGATGCGCCGTGCCAGGAACTCGTCCTCGCCAGACGTCCAGGTGGTCGccagcagcagcagtagcaACGGCAGCAATACGTTTTCCATGAGGAACGTGCCCGAGAGGCCGTTTAAATGCCATCAATGCCCGAGCTCGACATTCGCCACGTTGGGCAATCTGAAGAAACACCGATCGAGCAAGCACCGCAAGACCACGTCTAGATCGGAGTCCAGCGATCAGCAGAACAGTCCACCGCGGTGCGCCGCGCAGAACGATCAGAGCGATTACGAAAGCCATTCGTCGAGCATGTCCGACAATTTGGAGAACTCGTCATCCACCGTCGCGGCCACGAAGCCGAGTTGCAACGCATCTCCTTCGATAAACGACACCACCAGATCGCGCAAGTCACCAAGATTATCGCCGAGTCCCGGTGACGTACCCTTCAAGTGTTATCTGTGCGACAGCGGTTTCTCGGAACGCCAGGACTGCTTGGATCACATCAAGATAAATCACAAGCGCTCGTACGAGATGCTAAAGGCCAAGGGCGCCCTCGAAATGGCGTCTATGAATGTAGATGCGACAGAAGATCAAATGTTAGCGTCGCAGCAGCATCCTAGCGACggtgaagaaaagaaaggccGTTTTCCCGACTACAGCAACAGAAAGGTTGTGTGCGCTTTTTGCATGAGACGATTTTGGTCCGCGGAAGATCTTCGGCGTCACATGAGGACCCATACAGGCGAGAGGCCCTTCGAGTGCGATATCTGCACCAGGAAGTTCACGTTGAAGCACAGCATGCTGCGCCACCGTAAGAAGCACGAATCGGTGGAGTCCGCCATGTACATAGGCAATAGCGGCGACGAGGAGAACTCGCCCGCACAACCGCCGACGATAACCCCCAGAAGTCAGCAGCACTCGCCGATCTCCACCAATACCAGTAGACCCCGCACCCAGGATAGAATCTCCCTGCCGACCGTCGCGGCGGTTGCGACGGCGGACGCGGCACCCTGTGCCCTGATGCGATACAATCACTACGATAACATGGCCACGCTCACCGGTAGAATGGCGAACGATGGTCCCCAGGGCGCCGCATCCGCCGCCCTGCCTTCCCCGCCTCCCCCCGCGGAGATACCCAGCGAGAGCGGTGACAACGACTTGATCTCCAATCTACTGGGAATACGCGAGAAAGGTTTCCTCGATAAGGTACTTCTAGGCACGGCCGATGATGCGGCGAAGTTGTTGGGTGTCAAGGACAGCGAGTGA
Protein Sequence: MSFTTNGNMNRHVKCTHRMVSPNSCTDSEGSSGSERPAATSQDEYNNNNEIARRNSSDLIDDQEQPSPSNNRANKRKCPEEDVSDVEDQRRHKILLNNRMPIKYRPEEEQKAFDCPVCSQDFASSALLQSHMERVHPGSLVTCETCNESFKNYRVLNLHRTMKHYKKNSEGNNSRSLRNTVDGFKDLTFIDFSSIKFPTIARAMCERELHRPASGEVNRFQCMKCLHAFPCRQAQLAHEKECKGPYKNKRNSNDNNNNNDISTNNNLEAELDDPTPQSEDPKTKREMFFAVLDLQNKSSTHETKEPREPSETGDLAKETKDLADIPSILSVSLNGLQTFPRSDASTPENNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCRSVFPNLRALKGHNRAHMNVEPGMPYPCNMCPYTSTDKGALMKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPNEDSTNDNIERSSPRIVREDVRKTLVYPNEREESSQQQQIHYPVTMDPGPSNVRAEILINRYEKTDVFPRPTKIQALNLIKKSADEANLSHDLIMKSNYSKIDDDIELGSSDGSVSLVNDTKTDTHQRIQASPMNLSKLSTSSGLSSGEDGPLDLSMDVLDLSRKRKRDNDDSGLPEEKRFKSSQELYATNPALLLTQALLNRARENSPTTSLETLYANTLYRNFGATLTGASMIPPYFLSPHMFGQDLATKGRLQKELVRGLQLTGGSTLSVDPSLPSTSYAAYSQTRDTTQTSSEQNAYANLMSAQMSANQTTTSREKTDNISSNDPVKMVLKNGVLIPKQKQRRYRTERPFTCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPASHPTMVQTPGPSTSQVAQPYSGILPKAVDTPVTSTEYGTHSISDQVKYAILAQQLKANKMDDNDTDDEMVIDEESADRDSQESQAQREPSTSLLRDQLENSEGVKDVVVKTEAVESAEEASKEIHGEQTARSNGDNPEESTVAEGKSVHAEETIKTESTEREQSKLEDGTPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSSPNKKKKKKKKSAYSMAPNRVTCPYCERQFPWSSSLRRHILTHTGQKPYQCMHCSHHFTTKSNCDRHLLRKHKAKANKMRRARNSSSPDVQVVASSSSSNGSNTFSMRNVPERPFKCHQCPSSTFATLGNLKKHRSSKHRKTTSRSESSDQQNSPPRCAAQNDQSDYESHSSSMSDNLENSSSTVAATKPSCNASPSINDTTRSRKSPRLSPSPGDVPFKCYLCDSGFSERQDCLDHIKINHKRSYEMLKAKGALEMASMNVDATEDQMLASQQHPSDGEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVESAMYIGNSGDEENSPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGPQGAASAALPSPPPPAEIPSESGDNDLISNLLGIREKGFLDKVLLGTADDAAKLLGVKDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_01229243;
80% Identity: -