Basic Information

Insect: Polyergus mexicanus
Gene Symbol: RREB1
Assembly: GCA_030449975.1
Location: JAUDSZ010000001.1:12046068-12052965[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00037 0.064 15.0 1.7 1 23 53 75 53 75 0.97

2 15 0.00019 0.033 15.9 0.1 1 23 89 111 89 111 0.98

3 15 0.00012 0.022 16.5 4.7 1 21 117 137 117 140 0.95

4 15 0.03 5.3 9.0 0.0 5 23 241 260 238 260 0.94

5 15 0.0037 0.65 11.9 3.3 2 23 266 288 266 288 0.96

6 15 0.93 1.6e+02 4.3 0.1 1 23 513 535 513 535 0.96

7 15 0.0001 0.018 16.8 0.2 1 23 544 566 544 566 0.98

8 15 0.0047 0.82 11.5 3.1 1 23 572 595 572 595 0.96

9 15 0.0041 0.72 11.7 2.2 3 23 966 987 964 987 0.96

10 15 0.00011 0.02 16.6 0.1 2 23 1256 1277 1255 1277 0.97

11 15 1.1 1.9e+02 4.1 10.4 1 23 1283 1306 1283 1306 0.96

12 15 0.0046 0.8 11.6 2.2 1 23 1349 1373 1349 1373 0.97

13 15 0.14 24 6.9 1.8 1 23 1454 1476 1454 1477 0.96

14 15 0.017 3 9.8 0.4 3 23 1529 1549 1527 1549 0.93

15 15 0.0029 0.51 12.2 5.2 1 23 1555 1577 1555 1577 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00037	0.064	15.0	1.7	1	23	53	75	53	75	0.97
2	15	0.00019	0.033	15.9	0.1	1	23	89	111	89	111	0.98
3	15	0.00012	0.022	16.5	4.7	1	21	117	137	117	140	0.95
4	15	0.03	5.3	9.0	0.0	5	23	241	260	238	260	0.94
5	15	0.0037	0.65	11.9	3.3	2	23	266	288	266	288	0.96
6	15	0.93	1.6e+02	4.3	0.1	1	23	513	535	513	535	0.96
7	15	0.0001	0.018	16.8	0.2	1	23	544	566	544	566	0.98
8	15	0.0047	0.82	11.5	3.1	1	23	572	595	572	595	0.96
9	15	0.0041	0.72	11.7	2.2	3	23	966	987	964	987	0.96
10	15	0.00011	0.02	16.6	0.1	2	23	1256	1277	1255	1277	0.97
11	15	1.1	1.9e+02	4.1	10.4	1	23	1283	1306	1283	1306	0.96
12	15	0.0046	0.8	11.6	2.2	1	23	1349	1373	1349	1373	0.97
13	15	0.14	24	6.9	1.8	1	23	1454	1476	1454	1477	0.96
14	15	0.017	3	9.8	0.4	3	23	1529	1549	1527	1549	0.93
15	15	0.0029	0.51	12.2	5.2	1	23	1555	1577	1555	1577	0.98

Sequence Information

Coding Sequence: ATGTTATTGTCCCGGCTTCATTTGCGGTTCGGGGTATCAGCTTCCGGAATACTCGCGATTGAATTCGAGAATGGAACCGATCAAGAGCAGGAGAACGAAACACAAATTGATGCCGCATCACCATCATCAAGCGTCGAGTTATCGGAGAATGGCGCGCATCCGTGCCCAATGTGCTCGTCGATATTTTCCAGTTCCCACGAACTAACGAATCATCTGCGCGGCCATAACTCACCCCGCAGCACAGATTGCAGCGGCGAGGAGGATTACAGCTGCGGGGTTTGCAACAAGGTGCTCAGCTCGGCGAGCTCGTTGGACCGACACGTCCTGGTACACTCGGGCGAACGGCCCTTCAAGTGCAAATACTGCAACATGTCGTTCACGACGAATGGCAATATGAATCGTCACGTGAGGTGCACCCATCGGGTGGCGTCGCCGAACAGTTGCACGGACTCCGAGGGCAGCAGCGGCTCGGAGAGACCGGCGACGACGAATCAGGGCGAATACAACAACAACGAATTAGCCAGGCGCAACTCGCCAATCTTGATCGACGACCAACAGCAACCATCGTCGCCCGGCAATCATCACGCGAGCAAGCGAAAATGCTTGCAAGATGATGCCAGCGACACGGAGGAGCAGAAGAGGCACAAGACCCTCATGAATAATACCAGAATAATGATAAGATGCCAACCGGACGGGGAGCAGATGACGTTCGGTTGTATAATCTGTGGCAAAGACTTTGTGAGCGGCGCGATGCTAGAAGCTCACATGGAACGCGTGCATCCGGAATCCCTGGCCACTTGCGAGATCTGCAGCATGACCTTCAAGAATCACCGGCAATTGAACCTCCATCGTTCTATGAGTCATTACAAGAAGAATGCAGGCGGCAATAACAGTCGTCGCAGCACCGTGGACGGTTTCGGCGATCTCACGTTCATGGACTTTTCGGCGGCAAAGTTCGCGGAAATCGCCCGACGGATGTGCGAGCAGGAGCTACATCGACCGGCCTCCGGCGAGGTCAATAGATTCCAATGCATGAAGTGCCTGCATGCGTTTCCGTGCAGACAGGCGCAGCTCGATCATGAAAAGGAATGCAAAGGTCCATACAAGAACAAGAGAAACAGTAACGACAGcaacaataataatgataacaatACCAATAACAATCTCGAAATGGAACTGGATGCTCCGTCCCCGCAGCCTGACGATCCCAAAACGACGCGCGAGATCTTCTTCGCCGTGTTGGATCTGCAGAATAAATCCTTGGCGCGCGAAGCGAAGGAATCTAGGGAGCCGAAGGAGATCACGGAACCGAAGGAGATGAAGGATCTAGCGGATATCCCGAGCATCTTGTCCGTCAGTTTGAACGGGCTGCCGACCTTCCCGCGCTCGGACACCAGCACGCCCGAGAACAACATCAAGTTTAATCCGAATATCGGCTCTTCGGGTTCCTCGGGCACCTGCTCGTCCGAATATAACGAGGAGGAGGCACAAGATGCTTTCACTGCGGAATTTCGGAAAATGAAGCTGAAGGGCGAGTTTCCCTGCAGATTGTGTGCGTCAGTGTTTCCCAATCTGCGGGCGCTCAAGGGGCACAATCGTGCGCATATGAACGTAGAACCGGGAATGCCGTATCCGTGCAATATGTGCCCCTTCACCAGTACCGACAAAGGGGCCCTGTTGAAGCACTTGAGATCGCATAACGGTGATCGACCTTTCGAATGCTCCCTCTGCAATTACGCATTTACCACTAAGGCAAATTGCGAGAGACATGTAAAGAATCGCCATGGAATGATCAGCAAGGAGGATGTTAAGAATGCGCTGATCTATCATCCAAGCGAGGACTCGACGAATGAGAATGTTGAGAGAAGCTCGCCCAGAGGTGTCAGGGACGACGTGCGAAAAACGCTCATCTATCCGAACGAGCGTGAAGAAACCTCTCAACAACAGCAGATACATTATCCGCCTGTATCGATGGACTGTAACCCAGGACCTTCGAATGTTTGCGCTGAAATGCTGATGAATTGTTACGAGAAGCCGGACATATTCCATAGACCAACAAAGATACAGGCTCTCAATCTTGTAAAGAAAAATGCCGAAGAATCGAACGTATCTCATGATCTGATCGTGAAGTCTAATTATTCAAAGATCGACGAGGATATTGAGTCAAGATCATCGGATGGCAGCGTGTCTCTAGTCAGCGATACCAAAACAGATACACACCAAAGAATTCAAGCTAGTCCGATAAATCTGACCAAGTCCACGACAAGCTCCGTGTTAAGTTCGGGAGAGGACGGTCCTTTGGATCTATCCATGGACGTTGTTCTAGATCTTAGCAGGAAACGGAAGAGGGAGAACGAAAATTCTCAGGAGGAGAAACATTATAAGAACAATCAGGAATTGTATGCCGCGAATCCGGCACTACTGCTAACTCAAGCTCTGCTGAACAGAGCACGCGAAAGTTCGACTACGTCGTTAGAGAATTTTTGTGCGAGCACTTTCTATCGTAATCTCAATACGTTGACTAGCGCCTCTATGATACCGTCGTATTTCCTCAATCCTCATATGTTCGGTCAGGAATTGACGGAGAAGGGCAAATTGCAGAAGGAGCTAGTCAGGGGTTTGCAGTTGACCGGCGGCAGCACCTTTCCCGTGGAACCATCACTGCCCAGCACCAGTTACGCGGCATACGCGCAGGCGCGGGACATCCCGCAATCCTCGAGCGAACACAATGCCTACGCGAACTTGGTGAACGCGCAGATAGCTAACCAAGCCGCACCGAGCCGCGAAAAAACGGATAGCATTTCATCGAACGATCCCGTGAAGATGGTACTCAAAAATGGCGTGCTAATACCCAAGCAGAAGCAGCGCAGATACCGCACCGAGAGACCGTTCGGCTGCGAGCACTGCACGGCAAGATTCACACTGCGAAGCAACATGGAACGACACATTAAGCAACAACATCCTCAGTATTGGAGCCAAAGACCCCGCGGCGGACACTCAACTAGAGGCAGACCGCCAGCGAATCATCCGAATATGATGCAGAATTCCGGCCCGTCAACCTCGCAAGTAATTCAACCATATCCGAATATTCTTCAAAACGTCGACTCGTCAATGGTTACATCGGACTATAATACGCATCCCATTTCAGATCAAGTAAAGTATGCCATTCTAGCACAACAATTAAAAGCCGATAAAATGGATGACAATGATTCGGATGACGAAATGGTAATAGATGAGGAATCAGGCGACAGGGATGCACAGGAGCCGCAAGCTCAGCACGAACTTAGCACAAGCTTGCTGAGAGATCAGTTAGAGAGCAGCGAGGGCATTAAAGATATCGTCGTGAAAAAGGAACTGATCGACCCCGCGGAAGAGACCTTGGAAGAATCTCACGGTGAACAAGTTGCACGAAACGGCGTAGACAGGATCAACGCGGAAGAATCTGTGGCTGCTGAAAACAAATCGATACATAACGAAGAGATGATCAAGACGGAATCCTCCGGCAAAGAGCAGGGCAAACTGGAGGACGGAGCAGCCGATCTTGCGAGTGTCTCGAAACTATTGGACAACGCATCTCAGCAGTATCAGGAATTCAAACCGCAGTACTTGAGCGACGAAGAAGGCCCTGTAGCCTCGACCAGTGGCAACAATTCCGGTAGCGAAAAGTCCGACTCGAATTCTTTAAACTCCGGAAATGATTCTTCgtcgaataaaaagaaaaagaagaagaagaagtccGCGTACTCGATGGCACCGAATCGAGTCCCTTGTCCTTATTGCCCGCGTCAGTTCCCTTGGAGCTCATCGCTGAGACGGCACATTCTCACTCATACCGGCCAAAAGCCCTTTCAGTGCACACATTGCTCGCATTACTTTACTACAAAGTCCAACTGCGACCGCCACTTGTTAAGGAAACATAAGGCAAAGGCGAATAAGATGCGCCGTGTCAGAAACTCCTCCTCGCCAGACGTACAGGTGGTTgccagcagcagcagcagtagTAGTAACAATACATTCTCCATGAGAAACGTGCCCGAAAGACCGTATAAGTGCAATCAGTGCCCAAGCTCGACCTTCTCTACTTTAGGCAATCTGAAAAAGCACCGATCGACTAAGCATCGTAAGACTACGTCCCGATCGGAATCCAGCGATCAACAGAATAGTCCACCGCAGTGCTCCAACACGCAGAACGATCATAGTGATTACGAGAGCCGGTCGTCGAGCGCATCCGAGAACATGGAGAATTCCCCTAGCACAGCCGTAAAGGTAAATTCTAATACGACATCTCTGGCATCGATGAACGAGATCACCAGATCACGCAAGTCGCCAAGATCATCGCCTGGTCCTAGCGATGCTCCCTTCAAATGTTACTTGTGCGATAGCGGCTTTTCCGAGCGTCAAGATAATTTGGATCACATCAAAATGCATCACAAGCGCTCATACGATATGCTGAAGGCCAAGGGCGCCCTCGATATGGCATCTATGAACATAGACGCGAATGAAGATCAGATGGCACAGCAACATCCTAGTGACGGCGAAGATAAGAGAGGTCGATTTCCCGATTACAGTAATAGAAAGGTTATATGTGCTTTCTGTATGAGACGATTTTGGTCCGCGGAAGATCTTCGGCGTCACATGAGAACCCACACGGGCGAAAGACCCTTCGAATGCGACATCTGCACTAGGAAGTTCACGCTGAAGCACAGCATGCTGCGCCACCGTAAAAAGCACGAGTCCGTGGATTCTGCCATGTACATAGGTAATAGCGGTGACGAGGACAATTCGCCTGCGCAGCCACCGACGATAACACCTAGAAGCCAGCAGCATTCGCCAATCTCTACGAATACTAGTAGACCCCGTACCCAGGACAGAATTTCTCTACCGACCGTTGCGGCAGTCGCAACAGCGGACGCGGCACCCTGTGCGCTTATGCGGTACAATCACTATGCGGACAACATGGCCACTCTCACCGGCAGAATGGCAAACGATAGCTCGCAGAACGCTGCGCCTGCTTCTCTGCCTTCCCCGCCACCTCCCGCGGAAGTGCCCAGTGAGAGCGGCGACAACGACTTGATCTCCAATTTATTGGGCATACGCGAGAAAGGTTTACTCGATAAGGTTCTTCTGAGCTCGGCGGACGACGCGGCCAAGTTATTGGGTGTCAATCATAGCGAGTGA
Protein Sequence: MLLSRLHLRFGVSASGILAIEFENGTDQEQENETQIDAASPSSSVELSENGAHPCPMCSSIFSSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCNMSFTTNGNMNRHVRCTHRVASPNSCTDSEGSSGSERPATTNQGEYNNNELARRNSPILIDDQQQPSSPGNHHASKRKCLQDDASDTEEQKRHKTLMNNTRIMIRCQPDGEQMTFGCIICGKDFVSGAMLEAHMERVHPESLATCEICSMTFKNHRQLNLHRSMSHYKKNAGGNNSRRSTVDGFGDLTFMDFSAAKFAEIARRMCEQELHRPASGEVNRFQCMKCLHAFPCRQAQLDHEKECKGPYKNKRNSNDSNNNNDNNTNNNLEMELDAPSPQPDDPKTTREIFFAVLDLQNKSLAREAKESREPKEITEPKEMKDLADIPSILSVSLNGLPTFPRSDTSTPENNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCASVFPNLRALKGHNRAHMNVEPGMPYPCNMCPFTSTDKGALLKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNENVERSSPRGVRDDVRKTLIYPNEREETSQQQQIHYPPVSMDCNPGPSNVCAEMLMNCYEKPDIFHRPTKIQALNLVKKNAEESNVSHDLIVKSNYSKIDEDIESRSSDGSVSLVSDTKTDTHQRIQASPINLTKSTTSSVLSSGEDGPLDLSMDVVLDLSRKRKRENENSQEEKHYKNNQELYAANPALLLTQALLNRARESSTTSLENFCASTFYRNLNTLTSASMIPSYFLNPHMFGQELTEKGKLQKELVRGLQLTGGSTFPVEPSLPSTSYAAYAQARDIPQSSSEHNAYANLVNAQIANQAAPSREKTDSISSNDPVKMVLKNGVLIPKQKQRRYRTERPFGCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANHPNMMQNSGPSTSQVIQPYPNILQNVDSSMVTSDYNTHPISDQVKYAILAQQLKADKMDDNDSDDEMVIDEESGDRDAQEPQAQHELSTSLLRDQLESSEGIKDIVVKKELIDPAEETLEESHGEQVARNGVDRINAEESVAAENKSIHNEEMIKTESSGKEQGKLEDGAADLASVSKLLDNASQQYQEFKPQYLSDEEGPVASTSGNNSGSEKSDSNSLNSGNDSSSNKKKKKKKKSAYSMAPNRVPCPYCPRQFPWSSSLRRHILTHTGQKPFQCTHCSHYFTTKSNCDRHLLRKHKAKANKMRRVRNSSSPDVQVVASSSSSSSNNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHRKTTSRSESSDQQNSPPQCSNTQNDHSDYESRSSSASENMENSPSTAVKVNSNTTSLASMNEITRSRKSPRSSPGPSDAPFKCYLCDSGFSERQDNLDHIKMHHKRSYDMLKAKGALDMASMNIDANEDQMAQQHPSDGEDKRGRFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEDNSPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYADNMATLTGRMANDSSQNAAPASLPSPPPPAEVPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_00868296;
80% Identity: -