Basic Information

Insect: Lasius platythorax
Gene Symbol: RREB1
Assembly: GCA_963971435.1
Location: OZ020539.1:19328444-19335465[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.1e-05 0.0081 18.1 1.0 1 23 74 96 74 96 0.97

2 15 0.0002 0.039 15.9 0.1 1 23 110 132 110 132 0.98

3 15 6.6e-05 0.013 17.4 4.2 1 21 138 158 138 161 0.95

4 15 0.0019 0.38 12.8 0.0 1 23 264 287 264 287 0.96

5 15 0.0026 0.52 12.4 3.4 2 23 293 315 293 315 0.94

6 15 0.96 1.9e+02 4.3 0.1 1 23 542 564 542 564 0.96

7 15 0.00011 0.022 16.7 0.2 1 23 573 595 573 595 0.98

8 15 0.0049 0.98 11.5 3.1 1 23 601 624 601 624 0.96

9 15 0.0043 0.86 11.7 2.2 3 23 990 1011 988 1011 0.96

10 15 0.00012 0.024 16.6 0.1 2 23 1279 1300 1278 1300 0.97

11 15 5.7 1.1e+03 1.9 11.8 1 23 1306 1329 1306 1329 0.96

12 15 0.0048 0.95 11.6 2.2 1 23 1372 1396 1372 1396 0.97

13 15 0.15 29 6.9 1.8 1 23 1475 1497 1475 1498 0.96

14 15 0.013 2.6 10.2 0.4 2 23 1549 1570 1548 1570 0.94

15 15 0.0031 0.61 12.2 5.2 1 23 1576 1598 1576 1598 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.1e-05	0.0081	18.1	1.0	1	23	74	96	74	96	0.97
2	15	0.0002	0.039	15.9	0.1	1	23	110	132	110	132	0.98
3	15	6.6e-05	0.013	17.4	4.2	1	21	138	158	138	161	0.95
4	15	0.0019	0.38	12.8	0.0	1	23	264	287	264	287	0.96
5	15	0.0026	0.52	12.4	3.4	2	23	293	315	293	315	0.94
6	15	0.96	1.9e+02	4.3	0.1	1	23	542	564	542	564	0.96
7	15	0.00011	0.022	16.7	0.2	1	23	573	595	573	595	0.98
8	15	0.0049	0.98	11.5	3.1	1	23	601	624	601	624	0.96
9	15	0.0043	0.86	11.7	2.2	3	23	990	1011	988	1011	0.96
10	15	0.00012	0.024	16.6	0.1	2	23	1279	1300	1278	1300	0.97
11	15	5.7	1.1e+03	1.9	11.8	1	23	1306	1329	1306	1329	0.96
12	15	0.0048	0.95	11.6	2.2	1	23	1372	1396	1372	1396	0.97
13	15	0.15	29	6.9	1.8	1	23	1475	1497	1475	1498	0.96
14	15	0.013	2.6	10.2	0.4	2	23	1549	1570	1548	1570	0.94
15	15	0.0031	0.61	12.2	5.2	1	23	1576	1598	1576	1598	0.98

Sequence Information

Coding Sequence: ATGCGGTTAGAGTGTCGGGCGAGAACGTTGATAAATGTTATTGTCCCGGCTTCACTTGCGGTTCGGGATATCTGCTTCCGGAATACTCGGTCAGATTTATGTCCTGTcctttgtgtgtCGATTGAATCCGAAAATGGAACCGATCAAGAGCAGGAGAACGAAGCACAAATTGATGCCGCATCACCATCATCAAGCGTCGAGCTGTCGGAGAATGGCGCGCATCCGTGCCCGATGTGCCCGTCGGTATTTTCCAGTTCCCACGAACTGACGAATCATCTGCGCGGCCATAACTCACCCCGCAGCACGGACTGCAGCGGCGAGGAGGACTACAGCTGCGGGGTTTGCAACAAGGTGCTCAGCTCGGCGAGCTCCCTGGACCGACACGTGCTGGTGCACTCGGGCGAACGACCGTTCAAGTGCAAGTACTGCGACATGTCGTTCACGACGAACGGCAACATGAACCGGCACGTGAGGTGCACCCACCGGGTGGCGTCGCCGAACAGTTGCACGGACTCCGAGGGCAGCAGCGGCTCGGAGagaccgacgacgacgacgaacaCTCCGGGCGAGTACAACAACAACAACGAGTTAGCCAGGCGCAACTCGCCGAGCTTGATCGACGACAATCGGCAACAAGCGTCGTCGCCCGGCAATCATCGCGGGAACAAGCGTAAATGCTTGCAAGACGACGCAAGCGCGAGCGACACGGAGGAGCAGAAGAGGCCCAAGACCCTCATGAATAACGGCACGATGATGATCGGATTTCAACGGGACGGCGGGGAGATGACGTTCGAATGTCTGATCTGCGGCAAAGACTTCGTGAGCGGCGCGATGCTGGAGGCACACGTGGAACGCGTGCATCCCAAGTCCATGGCCACCTGCGAGATCTGCAACATGTCGTTCAAGAATCACCGACAATTGAACCTCCATCGTTTCATGAGCCACTACAAGAAGAACGCGGGCGGGAACAACAGCCGTCGCAGCACCGTGGACGGTTTCAGCGATCTCACGTTCATGGACTTTTCGGCGGCGAAGTTCGCGGAGATCGCCCGACGGATGTGCGAGCAGGAACTGCACCGACCGGCCTCCGGCGAGGTCAACAGGTTCCAGTGCATGAAGTGCCTGCACGCGTTTCCGTGCAGACAGGCGCAGCTCGATCACGAGAAGGAATGCAAGGGTTCGTGCAAGAACAAGAGAAACAACAGCAACGACAGCAACAATAACAATGACAACAATACCAACAACAATCTCGAAATGGAACTGGACTCTCCGTCCCCGCAGCCCGACGATCCCAAAACGACCCGCGAGCTCTTCTTCGCCGTGCTAGATCTGCAGAACAAATCATCCTTGGCGCGCGAGGCGAAGGAAGCCAGAGAGCCGAAGGAGCTCAAGGAGTCGAAGGAGATGAAGGATCTGGCTGATATCCCGAGCATCTTGTCCGTCAGTTTGAACGGACTGCCGACCTTCCCGCGATCGGACACCAGCACGCCCGAGAGCAACATCAAGTTCAATCCGAATATCGGCTCTTCGGGTTCCTCGGGCACCTGCTCGTCCGAATATAACGAGGAGGAGGCGCAGGATGCCTTCACCGCGGAATTCCGGAAGATGAAGCTGAAGGGCGAGTTTCCCTGCAGACTGTGCGCATCCGTGTTTCCCAATCTGCGGGCGCTCAAGGGACACAATCGCGCGCACATGAACGTGGAACCGGGAATGCCGTATCCTTGCAACATGTGTCCCTTCACCAGCACCGACAAAGGGGCCTTATTGAAGCACCTCAGATCCCATAACGGTGATCGACCTTTCGAATGCTCTCTCTGCAATTATGCGTTTACCACCAAGGCGAATTGCGAGAGGCATGTAAAGAACCGTCACGGGATGATTAGCAAGGAGGATGTTAAGAATGCGTTGATCTATCATCCGAGCGAGGACTCAACGAACGAGAACGTCGAGAGAAGCTCGCCCAGAGGTATCAGGGACGAAGTGCGAAAGACGCTCGTCTATCCGAACGAGGAAGCCTCTCAACAACCGATACATTATCCGCCTGTATCGATGGACTGTAATCCGGGACCTTCGAACGTTTGCGCTGAGATGCTGATGAATCGCTACGAGAAGCCGGACATGTTCCACAGACCAACAAAGATACAGGCTCTGAATCTCGTGAAGAGAAACGCCGAGGAATCGAACGTGTCTCATGATCTGATAGTGAAGTCTAATTATTCCAAGATCGACGAGGACGTCGAGTCGAGATCATCGGATGGCAGCGTGTCTCTAGTCAGCGATACCAAAACAGATACACACCAAAGAATTCAAGCTAGTCCGATGAATCTGACCAAGTCCACGACAAGCTCTGTGTTGAGTTCGGGGGAGGACGGTCCGTTGGATCTGTCCATGGACGTTGTACTGGATCTGAGCAGGAAACAGAAGAGGGAGAACGAAAATTCCCAAGAGGAGAAACGTTATAAGAACAATCAACAGGAATTGTATTCCGCGAATCCGGCGCTGCTGTTGACTCAAGCTCTGCTGAACACAGCACGCGAGAATTCGCCGACGTCGCTGGAGAACTTTTACGCGAGTACTATCTATCGCAATCTCGCCAGCGCATCCATGATACCGCCGTATTTCCTCAGTCCTCACATGTTCAACCAGGAACTGACCGAGAAGGGCAGACTGCAGAAGGAGCTGGTCAGGGGTTTGCAGTTGACCGGCGGCAGCACTCTCCCGGTGGATCCGTCGCTGCCTAGCACCAGTTACGCGGCATTCGCGCAGGCGCGGGACAGCCCGCAAACCTCGAGCGAACACAACGCCTACGCGAACCTGATGAACGCGCAGATAGCCAGCCAGATCGCGCCGAGCCGCGATAAAACGGACAACATTTCGTCGAACGATCCCGTGAAGATGGTACTCAAGAACGGCGTGCTGATCCCCAAGCAGAAGCAGCGCAGATACCGCACCGAGAGACCGTTCGGCTGCGAGCACTGCACGGCAAGATTCACACTGCGAAGCAACATGGAACGACACATTAAGCAACAGCATCCTCAGTATTGGAGCCAAAGGCCCCGCGGTGGACACTCAACCAGAGGCAGACCGCCCGCGAATCATTCGACTATGATGCAGAATCCCGGCCCGTCGACCTCGCAAATAACTCAACCGTATCCGAGTATCCTTCCAAACGTCGACTCGTCAATGGTAACATCGGGGGACTATAACACGCATCCCATCTCAGATCAAGTAAAGTATGCTATTCTAGCGCAACAATTAAAAGCCGATAAAATGGATGACAATGATTCAGATGATGAAATGGTAATAGATGAGGAATCAGGCGACAGGGATGCTCAGGAGCCGCAGGAGCTTAGCACGAGCTTGCTTAGAGATCAGTTAGAGAGCAACGAGGGCGTTAAAGATATCGTCGTAAAAAAGGAAGTGATTGAGCCAGCGGAAGATACCTCGGAAGAATCTCACGGTGAACAGGCTGCGCGAAACGGCGTAGACAGAACCAGCGCGGAAGAATCTGCGGCTACTGAAAACAAGTCGATACGCACTGAAGAGACTATCAAGACGGAACCGACCGGGAAAGAGCAGGGCAAACTCGAGGACGGAGCAGCCGATCTCGCGAGTGTCTCGAAACTATTGGACAACGCGTCTCAGCAGTATCAGCAATTTCAACCGCAATACTTGAGTGACGAGGAAGGCCCCGTTGCCTCGACCAGTGGCAACAATTCCGGCAGCGAAAAGTCCGACTCCATGAATTCTTTAAACTCCGGAAATGATTCTTCGtcgaataaaaagaagaaaaaaaagaagaagtccGCGTACTCGATGGCACCGAATCGAGTCCCGTGCCCTTATTGCCCGCGTCAGTTTCCCTGGAGCTCGTCGCTGAGACGGCACATCCTCACTCACACCGGTCAGAAGCCCTTTCAGTGCATGCACTGCTCGCATCACTTCACCACCAAGTCCAACTGCGACCGCCACTTGTTGAGGAAACACAAGGCGAAGGCGAATAAGATGCGCCGTGTCAGAAACTCTTCCTCGCCGGATGTCCAGGTGGTtgccagcagcagcagcagtagcAGCAACAACACGTTTTCCATGAGAAACGTGCCCGAGAGACCATACAAGTGCAACCAGTGCCCGAGCTCGACCTTCTCTACATTAGGTAATCTGAAGAAGCACCGATCGACCAAGCATCGCAAGACTACGTCCCGGTCGGAATCTAGCGATCAACAAAACAGTCCACCGCAATGCTCCAACACGCAGAACGATCAAAGTGATTACGAGAGTCGGTCGTCGAGCGCGTCCGAGAACATGGAGAATTCCGCCACCGTAACCGCGAAGACGAATTCTAATATGACGTCGTCGATGAACGAGACCACCAGATCGCGCAAGTCACCGAGATCGTCGCCTGGTCCCAGCGATGTTCCCTTCAAATGTTATTTGTGCGACAGCGGCTTTTCCGAACGTCAAGATAATCTGGATCACATCAAAATGCATCACAAGCGCTCGTACGATATGCTGAAGGCCAAGGGTGCCCTTGATATGGCGACTATGAATATAGACGCGAGCGAAGAACAGATGGCACAGCAACATCCTAGTGACGGCGAAGAGAAGAGAGGTCGCTTTCCTGATTACAGCAATAGAAAgGTTGTGTGCGCTTTCTGTATGAGACGATTTTGGTCCGCGGAAGATCTCCGGCGTCACATGAGGACCCACACGGGCGAAAGGCCCTTCGAATGCGACATCTGCACCAGGAAATTCACGCTGAAGCACAGCATGCTGCGTCACCGTAAGAAGCACGAGTCCGTGGATTCCGCCATGTACATAGGTAACAGCGGTGACGAGGACAACTCGCCCGCGCAGCCGCCGACGATAACACCCAAAAGTCAACAGCATTCGCCGATCTCTACGAGCACCAGCAGACCCCGTACCCAGGACAGAATCTCTCTGCCGACCGTTGCGGCGGTCGCGACAGCGGACGCGGCACCCTGTGCGCTTATGCGGTACAATCATTACGACAACATGGCTACTCTCACCGGCAGAATGGCAAACGACGTCTCGCAGAGCACCGCGCCTGCTCCTGTTCCTTCCCCGCCACCTCCCGCGGAGATACCCAGCGAGAGCGGCGACAACGACTTGATCTCCAATCTACTGGGAATACGCGAGAAAGGTTTGCTCGACAAGGTTCTTCTGAGCTCGGCGGACGACGCGGCCAAGTTGTTGGGTGTCAATCATAGCGAGTGA
Protein Sequence: MRLECRARTLINVIVPASLAVRDICFRNTRSDLCPVLCVSIESENGTDQEQENEAQIDAASPSSSVELSENGAHPCPMCPSVFSSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCDMSFTTNGNMNRHVRCTHRVASPNSCTDSEGSSGSERPTTTTNTPGEYNNNNELARRNSPSLIDDNRQQASSPGNHRGNKRKCLQDDASASDTEEQKRPKTLMNNGTMMIGFQRDGGEMTFECLICGKDFVSGAMLEAHVERVHPKSMATCEICNMSFKNHRQLNLHRFMSHYKKNAGGNNSRRSTVDGFSDLTFMDFSAAKFAEIARRMCEQELHRPASGEVNRFQCMKCLHAFPCRQAQLDHEKECKGSCKNKRNNSNDSNNNNDNNTNNNLEMELDSPSPQPDDPKTTRELFFAVLDLQNKSSLAREAKEAREPKELKESKEMKDLADIPSILSVSLNGLPTFPRSDTSTPESNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCASVFPNLRALKGHNRAHMNVEPGMPYPCNMCPFTSTDKGALLKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNENVERSSPRGIRDEVRKTLVYPNEEASQQPIHYPPVSMDCNPGPSNVCAEMLMNRYEKPDMFHRPTKIQALNLVKRNAEESNVSHDLIVKSNYSKIDEDVESRSSDGSVSLVSDTKTDTHQRIQASPMNLTKSTTSSVLSSGEDGPLDLSMDVVLDLSRKQKRENENSQEEKRYKNNQQELYSANPALLLTQALLNTARENSPTSLENFYASTIYRNLASASMIPPYFLSPHMFNQELTEKGRLQKELVRGLQLTGGSTLPVDPSLPSTSYAAFAQARDSPQTSSEHNAYANLMNAQIASQIAPSRDKTDNISSNDPVKMVLKNGVLIPKQKQRRYRTERPFGCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANHSTMMQNPGPSTSQITQPYPSILPNVDSSMVTSGDYNTHPISDQVKYAILAQQLKADKMDDNDSDDEMVIDEESGDRDAQEPQELSTSLLRDQLESNEGVKDIVVKKEVIEPAEDTSEESHGEQAARNGVDRTSAEESAATENKSIRTEETIKTEPTGKEQGKLEDGAADLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSSSNKKKKKKKKSAYSMAPNRVPCPYCPRQFPWSSSLRRHILTHTGQKPFQCMHCSHHFTTKSNCDRHLLRKHKAKANKMRRVRNSSSPDVQVVASSSSSSSNNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHRKTTSRSESSDQQNSPPQCSNTQNDQSDYESRSSSASENMENSATVTAKTNSNMTSSMNETTRSRKSPRSSPGPSDVPFKCYLCDSGFSERQDNLDHIKMHHKRSYDMLKAKGALDMATMNIDASEEQMAQQHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEDNSPAQPPTITPKSQQHSPISTSTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDVSQSTAPAPVPSPPPPAEIPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_00868296;
80% Identity: -