Basic Information

Insect: Trachymyrmex septentrionalis
Gene Symbol: RREB1
Assembly: GCA_001594115.1
Location: NW:2520686-2539576[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.7e-05 0.0023 17.5 1.2 1 23 39 61 39 61 0.97

2 14 6.1e-05 0.0039 16.9 0.1 1 23 75 97 75 97 0.98

3 14 9.1e-05 0.0057 16.3 5.5 1 21 103 123 103 126 0.95

4 14 0.28 18 5.3 0.1 3 23 224 245 222 245 0.96

5 14 0.004 0.25 11.1 3.7 2 23 251 273 251 273 0.96

6 14 0.12 7.8 6.5 0.2 1 23 500 522 500 522 0.96

7 14 1.4e-05 0.00087 18.9 0.2 1 23 531 553 531 553 0.98

8 14 0.003 0.19 11.6 3.1 1 23 559 582 559 582 0.96

9 14 0.00033 0.021 14.5 3.1 1 23 954 977 954 977 0.97

10 14 0.00016 0.01 15.5 0.2 2 23 1247 1268 1246 1268 0.97

11 14 0.03 1.9 8.4 3.2 1 23 1341 1365 1341 1365 0.96

12 14 4.6 2.9e+02 1.5 1.6 1 23 1445 1468 1445 1468 0.90

13 14 0.0021 0.13 12.0 0.5 3 23 1522 1542 1520 1542 0.96

14 14 0.0018 0.12 12.2 5.2 1 23 1548 1570 1548 1570 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.7e-05	0.0023	17.5	1.2	1	23	39	61	39	61	0.97
2	14	6.1e-05	0.0039	16.9	0.1	1	23	75	97	75	97	0.98
3	14	9.1e-05	0.0057	16.3	5.5	1	21	103	123	103	126	0.95
4	14	0.28	18	5.3	0.1	3	23	224	245	222	245	0.96
5	14	0.004	0.25	11.1	3.7	2	23	251	273	251	273	0.96
6	14	0.12	7.8	6.5	0.2	1	23	500	522	500	522	0.96
7	14	1.4e-05	0.00087	18.9	0.2	1	23	531	553	531	553	0.98
8	14	0.003	0.19	11.6	3.1	1	23	559	582	559	582	0.96
9	14	0.00033	0.021	14.5	3.1	1	23	954	977	954	977	0.97
10	14	0.00016	0.01	15.5	0.2	2	23	1247	1268	1246	1268	0.97
11	14	0.03	1.9	8.4	3.2	1	23	1341	1365	1341	1365	0.96
12	14	4.6	2.9e+02	1.5	1.6	1	23	1445	1468	1445	1468	0.90
13	14	0.0021	0.13	12.0	0.5	3	23	1522	1542	1520	1542	0.96
14	14	0.0018	0.12	12.2	5.2	1	23	1548	1570	1548	1570	0.98

Sequence Information

Coding Sequence: ATGGACTATTCGAAGAAAGTGACTGGACCCGAGAATGGACCCAGCCAGGAACAGGAAAACGAAACTCAAATTGCATCACCATCATCaagcGTTGAGCTGTCGGAGAATGGCGCGCATCCATGCCCGACGTGCCCGTCGGTATTTTCCAGTTCCCACGAACTGACGAATCATCTGCGCGGTCACAATTCACCTCGCAGCACAGACTGCAGCGGTGAAGAGGACTACAGTTGCAGCGTGTGTAATAAGGTACTTAGTTCGGCGAGTTCGCTGGACCGGCACGTGCTGGTGCACTCAGGCGAACGACCGTTCAAGTGCAAACATTGCGATATGTCGTTCACGACGAATGGCAACATGAACCGGCACGTGAGGTGTACCCATCGGATGGTGTCGCCGAACAGTTGCACGGACTCTGAAGGCAGCAGCGGTTCGGAAAGACCGGCGGGGACAAGTCAAGACGAGTACAACAACAATGAGATAGCTAGGCACAATTCACCGGACCTGATCGACGATCGACAGCAACCGTCGCCCAGCAACAATCGCGGAAACAAGCGGAAATGCGCGGACGAGGACATCAGTGACATGGAGGACCAGAGGAGGCATAAGATCCTCTTGAACAACACCAAGATGTCGATCAGGTGTAGGCCAGAGGATGAGCAAAAAACCTTTGGTTGTTCGCTCTGCAGTCAGGATTTCGCGAGCAGTGCGATTTTGGAGTCTCATATGGAGCGCGTGCATCCGGGTTCTCCAGCTACATGCGAGACCTGCAATCAATCGTTCAAGAATCATCGTGCGTTAAACCTTCATCGTTCAATGAGACACTACAAGAAGAACCCGGACGGCAACAACAGCCGTAGCCTACGCAACACTGTGGACGGTTTCAGGGATCTGACGTTCATTGATTTTTCGTCCATCAAATTTCCAACGATCGCCCGGGCGATGTGCGAGCGTGAACTGCATCGGCCGGCCTCTGGCGAGGCCAATAGGTTCCAGTGCATGAAGTGCTTGCACGCGTTTCCCTGCAGACAGGCCCAGATGGCCCACGAGAAGGAATGCAAGGGTCCCTACAAGAACAAAAGAAACAACAACgacaacaataataacaatgatatTAGTACTAATAACAATCTCGAGACAGAGCTGGACGATCCGAGCCCGCAGCCCGATGATCCCAAGACGAAGCGCGAGATGTTCTTCGCTGTGTTGGATCTACAGAACAAGTCTTTGGCGCACGAGACGAAGGAGCCACGAGAACCAAGCGAAATCAGGGAATCGAAAGAGACTAAGGATCTAGCGGATATCCCGAGCATCTTATCTGTTAGTCTGAACGGACTGCAGACCTTTCCTCGATCGGATGCGAGCACGCCCGAGAATAACATCAAGTTCAATCCGAATATTGGCTCTTCAGGTTCCTCAGGCACCTGTTCGTCCGAATATAATGAAGAAGAAGCGCAGGATGCCTTCACCGCGGAATTCCGGAAGATGAAACTGAAGGGCGAGTTCCCATGTAGACTATGCACATCTGTATTTCCCAATTTGCGAGCATTGAAGGGACACAATCGCGCGCATATGAACGTGGAACCGGGTATGTCATATCCGTGCAATATGTGCCCCTATAGCAGTACCGACAAGGGAGCTCTGATGAAGCATCTGAGATCGCATAACGGTGACAGGCCTTTCGAGTGCTCTCTTTGCAATTATGCGTTCACCACCAAAGCGAATTGTGAGAGGCACGTGAAGAATCGTCACGGGATGATCAGCAAGGAAGATGTTAAGAATGCACTAATCTATCATCCGAATGAAGATTCGACAAACGAGAACATCGAAAGAAGCTCGCCCAGGGTCCTCAGAGAAGATGTACGGAAGACGCTTCATTATCCGAATGAACGCGAAGAAATTCCTCAACAACAAATACATTATCCGACTATAGCGATGGATTGTAATCCTGGACCATCGAACATTTGCCCCGAGATACTGATGAATCGCTACGATAAGTCGGACGCGTTCACCAGAGTGAAGATGCAGGCTCTTAATCTTGTCAAAAGAAACGCCGACGAAGCAAACCTGTCTCACGATTTGCTCGTAAAATCTAATTACTCGAAGATCGACGACGATGTCGAGTCGGGATCGTCGGACGGCAGCGTGTCTCTAGTCAGTGATACCAAAACGGATACACACCAAAGAATTCAAGCTAGTCCGATGAACCTGACGAAGCCCTCGACAAGCTCTGGGTTGAGCTCGGGGGAGGACGGTCCGTTGGATCTGTCCATGGATGTGTTGGATCTGAGCAGgaagcgaaagagagaaatcgaGGATTCCGGTTCGCAGGAGGAGAAGCGGTTTAAGAGCAATCAACAGGAATTGTACGCCACGAATCCAGCGTTGCTGCTGACTCAAGCTCTACTGAGTACAGCACGCGAGAGCTCACCGACGTCGCTGGAGACTCTTTATGCGAATACTATTTATCGCAATTTCGGCACGTTAACCGGTGCCGGCATGATACCGCCATACTTCCTCAGTCCTCACATGTTCGGCCAGGAATTAACGAAGGGCAGGCTGCAGAAGGAACTAGTTAGAGGTTTGCAGCTCACTGGTGGCGGTACACTCTCAGTGGATCCGTCATTGCCCAGCACCAGTTACGCAGCGTATCCGCAAACAAGGGACACTCCGCAACCCTCGAGTGAGCAAAATGCTTATGCAAACTTGATGAATACGCAGATTACTAATCAGATTACTAATCAGACCACGCCGAGCCGTGAAAAAACAGATGCTATCCCGTCGAACGATCCCGTGAAAATGGTGCTTAAGAACGGAGTGTTAATTCCCAAGCAAAAGCAACGTAGATATCGTACTGAGAGACCTTTTACTTGCGAGCATTGCACGGCGAGATTCACGCTAAGGAGTAACATGGAACGGCATATCAAGCAACAGCATCCACAGTATTGGAGCCAAAGACCTCGCGGTGGACATTCGACTAGAGGCCGACCGCCCGCAAGTCATCCAAGTATGGTACAGAATACTGGTCCATCGACCTCGCAAATAGTTCAACCATATTCGAGCATTCTTCCGAACGTCGACACGCCGGGGATCACATCGACGGACTATGGCACACACCCTATCTCGGACCAAGTAAAATACGCGATTTTGGCGCAACAGCTGAAGGTCAATAAAATAGATGACAACGATTCGGACAACGAAATGGTGATAGACGAGGAGCTGGCTGATCGAGATGTTCAAGAGCCGCAAGCTCAACGCGAGCCTAGCATGAGTTTGTTGAGAGATCAGTTGGAAAACAGCGATGGTGTTAAAGATATCCTCGTAAAAACGGAAGCGGCCGAGTCCGCGGAGGAAACCTCGGAAGAAACTCATGGTGAACAGACCACACGGAATAACATTGACGCCGATCTAGAAGAATCCGTAGCGGAAAGCAAATCAATACACGTTGAAGAAATGACACAAAAGGTGTCATCTACTGAAAAGGAACAAGGCAAACTTGAAGACGGAGCGCCCGACCTCGCTAGTGTCTCAAAGCTTTTGGACAATGCGTCTCAGCAATATCAGCAATTTCAACCGCAATATTTGAGCGACGAGGAGGGCCCCGTTGCGTCGACCAGCGGTAATAACTCCGGCAGCGAGAAGTCCGATTCCATGAATTCCTTGAACTCCGGGAATGATTCCTCGCCaaataagaagaagaaaaagaagaaaaagtccGCGTACTCAATGGCACCGAACCGCGTTTCATGTCCCTATTGTGACCGTCAATTTCCATGGACTTCGTCGCTGAGACGACACATTCTCACCCACACCGGCCAGAAGCCGTATCAGTGCATTCACTGCTCGCATCATTTCACTACCAAGTCCAACTGCGACCGCCATTTGTTGAGAAAGCACAAGGCGAAAGCGAACAAGATGCGCCGTGTCAGGAACTCATCCTCGCCGGACGTCCAGGTGGTCGCTAGCAGCAGCAGTAGCAGCAACGGCAGCAACACGTTCTCCATGAGGAATGTGCCCGAGAGGCCGTTCAAATGTCATCAGTGCCCAAGCTCGACGTTCGCCACGTTGGGCAATTTGAAGAAACACCGGTCAAGTAAGCACCGTAAGAACGCGTCTAGATCGGAATCTAGCGATCAGCAGAACAGTCCGCCTCAATGCCCCGCGCAAAACGACCAGAGCGATTACGAGAGCCGTTCATCGAGCATATCCGACAACATGGAGAACACGTCGTCTGCCGTCGCAGCCGCGAAACCGACTTCCACCGCGTCACCCTCGATAAATGACGCCAACAGATCGCGCAAATCGCCAAGATTGTCGCCGAGTCCCGGTGATGTACCCTTCAAATGTTATCTGTGCGACAGCGGCTTCTCGGAACGCCAGGACTGCCTGGACCATATCAAAGCCAGTCATAGTCGTTCGTACGATATGTTGAAGGCCAAAGGGGCTCTCGACATGGCGTCCATGAATATTGATGCAAACGAAGATCAGATGTTAGCGTCGCACCAACATCTCAGCGACGgtgaagaaaagaaaggcCGTTTTCCTGATTACAGCAACAGAAAGGTTATGTGCGCTTTCTGCTTGAGACGATTTTGGTCCGCGGAGGATCTCCGGCGTCACATGAGGACTCACACGGGTGAGAGGCCCTTCGAATGCGACATATGCACCAGGAAATTCACGCTCAAACACAGCATGCTACGCCACCGTAAGAAACATGAGTCAGTGGACTCCGCCATGTATATAGCTAACAGCGGCGACGAGGACAATTCGCCCGCGCAACCACCGACGATAACACCCAGGAGTCAACAGCACTCGCCGATCTCCACCAACACCAGCAGGCCCCGCACCCAGGATAGAATCTCTTTGCCGACCGTTGCGGCGGTAGCAACGGCGGACGCGGCACCCTGTGCCCTGATGCGATACAATCACTATGATAACATGGCCACTCTCACCGGTAGAATGGCGAACGATGGTCCTCAGGGTACCGCATCCGCTCCGCTGCCTTCTCCGCCGCCTCCCGCGGAGGTACCCAGTGAGAGCGGAGATAACGACCTGATCTCTAATTTGCTGGGTATACGCGAGAAAGGTTTACTCGACAAAGTTCTTCTAAGCTCGGCGGACGACGCGGCGAAGTTGTTGGGGGTGAACCACAATGAGTAA
Protein Sequence: MDYSKKVTGPENGPSQEQENETQIASPSSSVELSENGAHPCPTCPSVFSSSHELTNHLRGHNSPRSTDCSGEEDYSCSVCNKVLSSASSLDRHVLVHSGERPFKCKHCDMSFTTNGNMNRHVRCTHRMVSPNSCTDSEGSSGSERPAGTSQDEYNNNEIARHNSPDLIDDRQQPSPSNNRGNKRKCADEDISDMEDQRRHKILLNNTKMSIRCRPEDEQKTFGCSLCSQDFASSAILESHMERVHPGSPATCETCNQSFKNHRALNLHRSMRHYKKNPDGNNSRSLRNTVDGFRDLTFIDFSSIKFPTIARAMCERELHRPASGEANRFQCMKCLHAFPCRQAQMAHEKECKGPYKNKRNNNDNNNNNDISTNNNLETELDDPSPQPDDPKTKREMFFAVLDLQNKSLAHETKEPREPSEIRESKETKDLADIPSILSVSLNGLQTFPRSDASTPENNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCTSVFPNLRALKGHNRAHMNVEPGMSYPCNMCPYSSTDKGALMKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPNEDSTNENIERSSPRVLREDVRKTLHYPNEREEIPQQQIHYPTIAMDCNPGPSNICPEILMNRYDKSDAFTRVKMQALNLVKRNADEANLSHDLLVKSNYSKIDDDVESGSSDGSVSLVSDTKTDTHQRIQASPMNLTKPSTSSGLSSGEDGPLDLSMDVLDLSRKRKREIEDSGSQEEKRFKSNQQELYATNPALLLTQALLSTARESSPTSLETLYANTIYRNFGTLTGAGMIPPYFLSPHMFGQELTKGRLQKELVRGLQLTGGGTLSVDPSLPSTSYAAYPQTRDTPQPSSEQNAYANLMNTQITNQITNQTTPSREKTDAIPSNDPVKMVLKNGVLIPKQKQRRYRTERPFTCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPASHPSMVQNTGPSTSQIVQPYSSILPNVDTPGITSTDYGTHPISDQVKYAILAQQLKVNKIDDNDSDNEMVIDEELADRDVQEPQAQREPSMSLLRDQLENSDGVKDILVKTEAAESAEETSEETHGEQTTRNNIDADLEESVAESKSIHVEEMTQKVSSTEKEQGKLEDGAPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSSPNKKKKKKKKSAYSMAPNRVSCPYCDRQFPWTSSLRRHILTHTGQKPYQCIHCSHHFTTKSNCDRHLLRKHKAKANKMRRVRNSSSPDVQVVASSSSSSNGSNTFSMRNVPERPFKCHQCPSSTFATLGNLKKHRSSKHRKNASRSESSDQQNSPPQCPAQNDQSDYESRSSSISDNMENTSSAVAAAKPTSTASPSINDANRSRKSPRLSPSPGDVPFKCYLCDSGFSERQDCLDHIKASHSRSYDMLKAKGALDMASMNIDANEDQMLASHQHLSDGEEKKGRFPDYSNRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIANSGDEDNSPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGPQGTASAPLPSPPPPAEVPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_01355659;
80% Identity: -