Basic Information

Insect: Lasius niger
Gene Symbol: RREB1_1
Assembly: GCA_001045655.1
Location: LBMM01001278.1:10997-32428[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.5e-05 0.0026 18.1 1.0 1 23 41 63 41 63 0.97

2 15 0.00012 0.013 16.0 0.1 1 23 77 99 77 99 0.98

3 15 4e-05 0.0043 17.4 4.2 1 21 105 125 105 128 0.95

4 15 0.0011 0.12 12.9 0.0 1 23 232 255 232 255 0.96

5 15 0.00071 0.076 13.5 2.6 2 23 261 283 260 283 0.94

6 15 0.58 63 4.3 0.1 1 23 510 532 510 532 0.96

7 15 6.5e-05 0.007 16.8 0.2 1 23 541 563 541 563 0.98

8 15 0.003 0.32 11.6 3.1 1 23 569 592 569 592 0.96

9 15 0.0026 0.28 11.7 2.2 3 23 960 981 958 981 0.96

10 15 7.2e-05 0.0077 16.6 0.1 2 23 1249 1270 1248 1270 0.97

11 15 3.4 3.7e+02 1.9 11.8 1 23 1276 1299 1276 1299 0.96

12 15 0.0029 0.31 11.6 2.2 1 23 1342 1366 1342 1366 0.97

13 15 0.088 9.4 6.9 1.8 1 23 1445 1467 1445 1468 0.96

14 15 0.0078 0.84 10.2 0.4 2 23 1519 1540 1518 1540 0.94

15 15 0.0018 0.2 12.2 5.2 1 23 1546 1568 1546 1568 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.5e-05	0.0026	18.1	1.0	1	23	41	63	41	63	0.97
2	15	0.00012	0.013	16.0	0.1	1	23	77	99	77	99	0.98
3	15	4e-05	0.0043	17.4	4.2	1	21	105	125	105	128	0.95
4	15	0.0011	0.12	12.9	0.0	1	23	232	255	232	255	0.96
5	15	0.00071	0.076	13.5	2.6	2	23	261	283	260	283	0.94
6	15	0.58	63	4.3	0.1	1	23	510	532	510	532	0.96
7	15	6.5e-05	0.007	16.8	0.2	1	23	541	563	541	563	0.98
8	15	0.003	0.32	11.6	3.1	1	23	569	592	569	592	0.96
9	15	0.0026	0.28	11.7	2.2	3	23	960	981	958	981	0.96
10	15	7.2e-05	0.0077	16.6	0.1	2	23	1249	1270	1248	1270	0.97
11	15	3.4	3.7e+02	1.9	11.8	1	23	1276	1299	1276	1299	0.96
12	15	0.0029	0.31	11.6	2.2	1	23	1342	1366	1342	1366	0.97
13	15	0.088	9.4	6.9	1.8	1	23	1445	1467	1445	1468	0.96
14	15	0.0078	0.84	10.2	0.4	2	23	1519	1540	1518	1540	0.94
15	15	0.0018	0.2	12.2	5.2	1	23	1546	1568	1546	1568	0.98

Sequence Information

Coding Sequence: ATGGAATATTCGAAGAAAGCGATTGAATCCGAAAATGGAACCGATCAAGAGCAGGAGAACGAAGCACAAATTGATGCCGCATCACCATCATCAAGCGTCGAGCTGTCGGAGAATGGCGCGCATCCGTGCCCGATGTGCCCGTCGGTATTTTCCAGTTCCCACGAACTGACGAATCATCTGCGCGGCCATAACTCACCCCGCAGCACGGACTGCAGCGGCGAGGAGGACTACAGCTGCGGGGTTTGCAACAAGGTGCTCAGCTCGGCGAGCTCCCTGGACCGACACGTGCTGGTGCACTCGGGCGAACGGCCGTTCAAGTGCAAGTACTGCGACATGTCGTTCACGACGAACGGCAACATGAACCGGCACGTGAGGTGCACCCACCGGGTGGCGTCGCCGAACAGTTGCACGGACTCCGAGGGCAGCAGCGGCTCGGAGAGaccgacgacaacgacgacgaataCTCCGGGCGAgtacaacaacaacaacgagTTAGCCAGGCGCAACTCGCCGAGCTTGATCGACGACAATCGGCAACAAGCGTCGTCGCCCGGCAATCATCGCGGGAACAAGCGTAAATGCTTGCAAGACGACGCCAGCGCGAGCGACACGGAGGAGCAGAAGAGGCACAAGACCCTCATGAATAACGGCACGATGATGATCGGATTTCAACGGGACGGCGGGGAGATGACGTTCGAATGTCTGATCTGCGGCAAAGACTTCGTGAGCGGCGCGATGCTGGAGGCACACGTGGAACGCGTGCATCCCAAGTCCATGGTCACCTGCGAGATCTGCAACATGTCGTTCAAGAATCACCGGCAATTGAACCTCCATCGTTTCATGAGCCACTACAAGAAGAACGCGGGCGGGAACAACAGCCGTCGCAGCACCGTGGACGGTTTCAGCGATCTCACGTTCATGGACTTTTCGGCGGCGAAGTTCGCGGAGATCGCCCGACGGATGTGCGAGCAGGAGCTGCACCGACCGGCCTCCGGCGAGGTCAACAGGTTCCAGTGCATGAAGTGCCTGCACGCGTTTCCGTGCAGACAGGCGCAGCTCGATCACGAGAAGGAATGCAAGGGTTCGTGCAAGAACAAGAGAAACAACAGCAACGACAGCAACAATAACAATGACAACAATACCAACAACAATCTCGAAATGGAACTGGACTCTCCGTCCCCGCAGCCCGACGATCCCAAAACGACCCGCGAGCTCTTCTTCGCCGTGCTAGATCTGCAGAACAAATCATCCTTGGCGCGCGAGGCGAAGGAAGCCAGAGAGCCGAAGGAGCTCAAGGAGTCGAAGGAGATGAAGGATCTGGCGGATATCCCGAGCATCTTGTCCGTCAGTTTGAACGGACTGCCGACCTTCCCGCGATCGGACACCAGCACGCCCGAGAGCAACATCAAGTTCAATCCGAATATCGGCTCTTCGGGTTCCTCGGGCACCTGCTCGTCCGAATATAACGAGGAGGAGGCGCAGGATGCCTTCACCGCGGAATTCCGGAAGATGAAGCTGAAGGGCGAGTTTCCCTGCAGACTGTGCGCATCCGTGTTTCCCAATCTGCGGGCGCTCAAGGGACACAATCGCGCGCACATGAACGTGGAACCGGGAATGCCGTATCCTTGCAACATGTGTCCCTTCACCAGCACCGACAAAGGGGCCTTATTGAAGCACCTCAGATCCCATAACGGTGATCGACCTTTCGAATGCTCTCTCTGCAATTATGCGTTTACCACCAAGGCGAATTGCGAGAGGCATGTAAAGAACCGTCACGGGATGATTAGCAAGGAGGATGTTAAGAATGCGTTGATCTATCATCCGAGCGAGGACTCAACGAACGAGAACGTCGAGAGAAGCTCGCCCAGAGGTATCAGGGACGAAGTGCGAAAGACGCTCGTCTATCCGAACGAGCGCGAGGAAGCCTCTCAACAACCGATACATTATCCGCCTGTATCGATGGACTGTAATCCGGGTCCTTCGAACGTTTGCGCTGAGATGCTGATGAATCGCTACGAGAAGCCGGACATGTTCCACAGACCAACAAAGATACAGGCTCTGAATCTCGTGAAGAGAAACGCCGAGGAATCGAACGTATCTCATGATCTGATAGTGAAGTCTAATTATTCCAAGATCGACGAGGACGTCGAGTCGAGATCATCGGATGGCAGCGTGTCTCTAGTCAGCGATACCAAAACAGATACACACCAAAGAATTCAAGCTAGTCCGATGAATCTGACCAAGTCCACGACAAGCTCTGTGTTGAGTTCGGGGGAGGACGGTCCGTTGGATCTGTCCATGGACGTTGTTCTGGATCTGAGCAGGAAACAGAAGAGGGAGAACGAACATTCCCAAGAGGAGAAACGTTATAAGAACAATCAACAGGAATTGTATTCCGCGAATCCGGCGCTGCTGTTGACTCAAGCTCTGCTGAACACAGCACGCGAGAATTCGCCGACGTCGCTGGAGAACTTTTACGCGAGTACTATCTATCGCAATCTCGCCAGCGCATCCATGATACCGCCGTATTTCCTCAGTCCTCACATGTTCAACCAGGAACTGACCGAGAAGGGCAGACTGCAGAAGGAGCTGGTCAGGGGTTTGCAGTTGACCGGCGGCAGCACTCTCCCGGTGGATCCGTCGCTGCCTAGCACCAGTTACGCGGCATTCGCGCAGGCGCGGGACAGCCCGCAAACCTCGAGCGAACACAACGCCTACGCGAACCTGATGAACGCGCAGATAGCCAGCCAGATCGCGCCGAGCCGCGATAAAACGGACAACATTTCGTCGAACGATCCCGTGAAGATGGTACTCAAGAACGGCGTGCTGATCCCCAAGCAGAAGCAGCGCAGATACCGCACCGAGAGACCGTTCGGCTGCGAGCACTGCACGGCAAGATTCACACTGCGAAGCAACATGGAACGACACATTAAGCAACAGCATCCTCAGTATTGGAGCCAAAGGCCCCGCGGTGGACACTCAACCAGAGGCAGACCGCCCGCGAATCATTCGACTATGATGCAGAATCCCGGCCCGTCGACCTCGCAAATAACTCAACCGTATCCGAGTATCCTTCCAAACGTCGACTCGTCAATGGTAACATCGGGGGACTATAACACGCATCCCATCTCAGATCAAGTAAAGTATGCTATTCTAGCGCAACAATTAAAAGCCGATAAAATGGATGACAATGATTCAGATGATGAAATGGTAATAGATGAGGAATCAGGCGACAGGGATGCTCAGGAGCCACAGGAGCTTAGCACGAGCTTGCTTAGAGATCAGTTAGAGAGCAACGAGGGCGTTAAAGATATCGTCGTAAAAAAGGAAGTGATTGAGCCCGCGGAAGATACCTCGGAAGAATCTCACGGTGAACAGGCTGCGCGAAACGGCGTAGACAGAACCAGCGCGGAAGGATCTGCGGCTACTGAAAACAAGTCGATACGCACTGAAGAGACTATCAAGACGGAACCGACCGGGAAAGAGCAGGGCAAACTCGAGGACGGAGCAGCCGATCTCGCGAGTGTCTCGAAACTATTGGACAACGCGTCTCAGCAGTATCAGCAATTTCAACCGCAATACTTGAGTGACGAGGAAGGTCCCGTTGCCTCGACCAGTGGCAACAATTCCGGCAGCGAAAAGTCCGACTCCATGAATTCTTTAAACTCCGGAAATGATTCTTCGTCgaataagaagaagaaaaaaaagaagaagtccGCGTACTCGATGGCACCGAATCGAGTCCCGTGCCCTTATTGCCCGCGTCAGTTTCCCTGGAGCTCGTCGCTGAGACGGCACATCCTCACTCACACCGGTCAGAAGCCCTTTCAGTGCATGCACTGCTCGCATCACTTCACCACCAAGTCCAACTGCGACCGCCACTTGTTGAGGAAACACAAGGCGAAGGCGAATAAGATGCGCCGTGTCAGAAACTCTTCCTCGCCGGATGTCCAGGTGGTtgccagcagcagcagcagtagcaGCAACAACACGTTTTCCATGAGAAACGTGCCCGAGAGACCATACAAGTGCAACCAGTGCCCGAGCTCGACCTTCTCTACATTAGGTAATCTGAAGAAGCACCGATCGACCAAGCATCGCAAGACTACGTCCCGGTCGGAATCTAGCGATCAACAAAACAGTCCACCGCAATGCTCCAACACGCAGAACGATCAAAGTGATTACGAGAGCCGGTCGTCGAGCGCGTCCGAGAACATGGAGAATTCCGCCACCGTAACCGCGAAGGCGAATTCTAATATGACGTCGTCGATGAACGAGACCACCAGATCGCGCAAGTCACCGAGATCGTCGCCTGGTCCTAGCGATGTTCCCTTCAAATGTTATTTGTGCGACAGCGGCTTTTCCGAACGTCAAGATAATCTGGATCACATCAAAATGCATCACAAGCGCTCGTACGATATGCTGAAGGCCAAGGGTGCCCTTGATATGGCGACTATGAATATAGACGCGAGCGAAGAACAGATGGCACAGCAACATCCTAGTGACGGCGAAGAGAAGAGAGGTCGCTTTCCTGATTACAGCAATAGAAAgGTTGTGTGCGCTTTCTGTATGAGACGATTTTGGTCCGCGGAAGATCTCCGGCGTCACATGAGGACCCACACGGGCGAAAGGCCCTTCGAATGCGACATCTGCACCAGGAAATTCACGCTGAAGCACAGCATGCTGCGCCACCGTAAGAAGCACGAGTCCGTGGATTCCGCCATGTACATAGGTAACAGCGGTGACGAGGACAACTCGCCCGCGCAGCCGCCGACGATAACACCCAAAAGTCAGCAGCATTCGCCGATCTCTACGAGCACCAGCAGACCCCGTACCCAGGACAGAATCTCTCTGCCGACCGTTGCGGCGGTCGCGACAGCGGACGCGGCACCCTGTGCGCTTATGCGGTACAATCATTACGACAACATGGCTACTCTCACCGGCAGAATGGCAAACGACGTCTCGCAGAGCACCGCGCCTGCTCCTGTTCCTTCCCCGCCACCTCCCGCGGAGATACCCAGCGAGAGCGGCGACAACGACTTGATCTCCAATCTACTGGGAATACGCGAGAAAGGTTTGCTCGACAAGGTTCTTCTGAGCTCGGCGGACGACGCGGCCAAGTTGTTGGGTGTCAATCATAGCGAGTGA
Protein Sequence: MEYSKKAIESENGTDQEQENEAQIDAASPSSSVELSENGAHPCPMCPSVFSSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCDMSFTTNGNMNRHVRCTHRVASPNSCTDSEGSSGSERPTTTTTNTPGEYNNNNELARRNSPSLIDDNRQQASSPGNHRGNKRKCLQDDASASDTEEQKRHKTLMNNGTMMIGFQRDGGEMTFECLICGKDFVSGAMLEAHVERVHPKSMVTCEICNMSFKNHRQLNLHRFMSHYKKNAGGNNSRRSTVDGFSDLTFMDFSAAKFAEIARRMCEQELHRPASGEVNRFQCMKCLHAFPCRQAQLDHEKECKGSCKNKRNNSNDSNNNNDNNTNNNLEMELDSPSPQPDDPKTTRELFFAVLDLQNKSSLAREAKEAREPKELKESKEMKDLADIPSILSVSLNGLPTFPRSDTSTPESNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCASVFPNLRALKGHNRAHMNVEPGMPYPCNMCPFTSTDKGALLKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNENVERSSPRGIRDEVRKTLVYPNEREEASQQPIHYPPVSMDCNPGPSNVCAEMLMNRYEKPDMFHRPTKIQALNLVKRNAEESNVSHDLIVKSNYSKIDEDVESRSSDGSVSLVSDTKTDTHQRIQASPMNLTKSTTSSVLSSGEDGPLDLSMDVVLDLSRKQKRENEHSQEEKRYKNNQQELYSANPALLLTQALLNTARENSPTSLENFYASTIYRNLASASMIPPYFLSPHMFNQELTEKGRLQKELVRGLQLTGGSTLPVDPSLPSTSYAAFAQARDSPQTSSEHNAYANLMNAQIASQIAPSRDKTDNISSNDPVKMVLKNGVLIPKQKQRRYRTERPFGCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANHSTMMQNPGPSTSQITQPYPSILPNVDSSMVTSGDYNTHPISDQVKYAILAQQLKADKMDDNDSDDEMVIDEESGDRDAQEPQELSTSLLRDQLESNEGVKDIVVKKEVIEPAEDTSEESHGEQAARNGVDRTSAEGSAATENKSIRTEETIKTEPTGKEQGKLEDGAADLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSSSNKKKKKKKKSAYSMAPNRVPCPYCPRQFPWSSSLRRHILTHTGQKPFQCMHCSHHFTTKSNCDRHLLRKHKAKANKMRRVRNSSSPDVQVVASSSSSSSNNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHRKTTSRSESSDQQNSPPQCSNTQNDQSDYESRSSSASENMENSATVTAKANSNMTSSMNETTRSRKSPRSSPGPSDVPFKCYLCDSGFSERQDNLDHIKMHHKRSYDMLKAKGALDMATMNIDASEEQMAQQHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEDNSPAQPPTITPKSQQHSPISTSTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDVSQSTAPAPVPSPPPPAEIPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_00110017; iTF_00869093; iTF_00730118; iTF_00729551; iTF_00730969; iTF_00730272; iTF_00280161; iTF_00280712; iTF_01245418; iTF_00867656; iTF_01255019; iTF_01077686; iTF_00265210; iTF_00264497;
80% Identity: -